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CmoCh15G014740 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh15G014740
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionLuc7-like protein 3
Genome locationCmo_Chr15:10014581..10015900
RNA-Seq ExpressionCmoCh15G014740
SyntenyCmoCh15G014740
Gene Ontology termsGO:0006376 - mRNA splice site selection (biological process)
GO:0005685 - U1 snRNP (cellular component)
GO:0071004 - U2-type prespliceosome (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR004882 - Luc7-related


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143633.1 luc7-like protein 3 [Cucumis sativus]1.5e-2596.72Show/hide
Query:  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLGLLT
        MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG  T
Subjt:  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLGLLT

XP_008467232.1 PREDICTED: luc7-like protein 3 [Cucumis melo]1.5e-2596.72Show/hide
Query:  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLGLLT
        MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG  T
Subjt:  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLGLLT

XP_022157696.1 luc7-like protein 3 [Momordica charantia]2.0e-25100Show/hide
Query:  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG
        MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG
Subjt:  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG

XP_023550802.1 luc7-like protein 3 [Cucurbita pepo subsp. pepo]2.0e-25100Show/hide
Query:  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG
        MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG
Subjt:  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG

XP_038874248.1 luc7-like protein 3 [Benincasa hispida]2.0e-25100Show/hide
Query:  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG
        MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG
Subjt:  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG

TrEMBL top hitse value%identityAlignment
A0A0A0KRS2 Uncharacterized protein7.5e-2696.72Show/hide
Query:  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLGLLT
        MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG  T
Subjt:  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLGLLT

A0A1S3CT91 luc7-like protein 37.5e-2696.72Show/hide
Query:  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLGLLT
        MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG  T
Subjt:  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLGLLT

A0A5D3BMT7 Luc7-like protein 37.5e-2696.72Show/hide
Query:  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLGLLT
        MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG  T
Subjt:  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLGLLT

A0A6J1EMU5 luc7-like protein 3 isoform X29.7e-26100Show/hide
Query:  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG
        MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG
Subjt:  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG

A0A6J1K4T0 luc7-like protein 39.7e-26100Show/hide
Query:  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG
        MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG
Subjt:  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG

SwissProt top hitse value%identityAlignment
O95232 Luc7-like protein 35.5e-1057.69Show/hide
Query:  LLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG
        LLDELMG  RNL  +E+R    V WD + VC +Y+  FCP +LF NTRSDLG
Subjt:  LLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG

Q3SX41 Luc7-like protein 35.5e-1057.69Show/hide
Query:  LLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG
        LLDELMG  RNL  +E+R    V WD + VC +Y+  FCP +LF NTRSDLG
Subjt:  LLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG

Q5R8W6 Luc7-like protein 35.5e-1057.69Show/hide
Query:  LLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG
        LLDELMG  RNL  +E+R    V WD + VC +Y+  FCP +LF NTRSDLG
Subjt:  LLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG

Q5SUF2 Luc7-like protein 35.5e-1057.69Show/hide
Query:  LLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG
        LLDELMG  RNL  +E+R    V WD + VC +Y+  FCP +LF NTRSDLG
Subjt:  LLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG

Q9USM4 U1 snRNP-associated protein usp1062.4e-0543.64Show/hide
Query:  QRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG
        QR ++++LMGS  NL+    RG   V + D++VC  ++   CPHD+F NT+ DLG
Subjt:  QRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG

Arabidopsis top hitse value%identityAlignment
AT3G03340.1 LUC7 related protein3.8e-0645Show/hide
Query:  MDAQRALLDELMGSARN--LTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG
        MDA R  LD LMG+ RN  + E  R+ Y      D++VC  Y+   CPHDLF  T+ D+G
Subjt:  MDAQRALLDELMGSARN--LTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG

AT5G17440.1 LUC7 related protein1.0e-0645Show/hide
Query:  MDAQRALLDELMGSARN--LTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG
        MDA R  LD LMG+ RN  +TE  R+ Y      D++VC  Y+   CPH+LF  T+ D+G
Subjt:  MDAQRALLDELMGSARN--LTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG

AT5G51410.1 LUC7 N_terminus domain-containing protein3.3e-2687.93Show/hide
Query:  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG
        MDAQRALLDELMG+ARNLT+EERRG+KEV WDD+EVC FYMVRFCPHDLFVNT+SDLG
Subjt:  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG

AT5G51410.2 LUC7 N_terminus domain-containing protein3.3e-2687.93Show/hide
Query:  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG
        MDAQRALLDELMG+ARNLT+EERRG+KEV WDD+EVC FYMVRFCPHDLFVNT+SDLG
Subjt:  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG

AT5G51410.3 LUC7 N_terminus domain-containing protein3.3e-2687.93Show/hide
Query:  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG
        MDAQRALLDELMG+ARNLT+EERRG+KEV WDD+EVC FYMVRFCPHDLFVNT+SDLG
Subjt:  MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGCCCAGAGAGCTCTTCTGGATGAACTCATGGGTTCAGCGCGTAATTTGACGGAGGAAGAAAGAAGAGGATACAAGGAAGTTATGTGGGATGATAAAGAGGTCTG
TGGGTTCTATATGGTCCGGTTCTGCCCGCATGATCTTTTCGTAAATACTCGGAGCGACCTTGGTCTACTTACAGTAAGTATATGCTCGTTTATCCTTTTTTTTGCGGACT
ATTGGTCTATAATGTATAGGAAGGATATGGCATTTGACAGGATTTGTTTTCGTGAGCGTTGGTTGGCTATTGTTTTTATGCATCAAGTTTCCAGTTCATAA
mRNA sequenceShow/hide mRNA sequence
TTTATTTCTTGGTGTTGCCGTTGGAGCCCTAGTACTAGCCCACACAATCTCTCCAAAAACATTCCCAAGAATCTCAAAACCCCTTTTTAATCTCTTGAAACTGAATTTCA
AGTTTCTGAATTTGGATCGTTCTTTCAAGTAATTGTTTCTTTGTTTTCTGTGATCCTCTGGAAAGCATTTGGTCAGCATGGACGCCCAGAGAGCTCTTCTGGATGAACTC
ATGGGTTCAGCGCGTAATTTGACGGAGGAAGAAAGAAGAGGATACAAGGAAGTTATGTGGGATGATAAAGAGGTCTGTGGGTTCTATATGGTCCGGTTCTGCCCGCATGA
TCTTTTCGTAAATACTCGGAGCGACCTTGGTCTACTTACAGTAAGTATATGCTCGTTTATCCTTTTTTTTGCGGACTATTGGTCTATAATGTATAGGAAGGATATGGCAT
TTGACAGGATTTGTTTTCGTGAGCGTTGGTTGGCTATTGTTTTTATGCATCAAGTTTCCAGTTCATAA
Protein sequenceShow/hide protein sequence
MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLGLLTVSICSFILFFADYWSIMYRKDMAFDRICFRERWLAIVFMHQVSSS