; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh16G000200 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G000200
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRibosome-binding factor PSRP1
Genome locationCmo_Chr16:109316..114736
RNA-Seq ExpressionCmoCh16G000200
SyntenyCmoCh16G000200
Gene Ontology termsGO:0045900 - negative regulation of translational elongation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0043022 - ribosome binding (molecular function)
GO:0043024 - ribosomal small subunit binding (molecular function)
InterPro domainsIPR003489 - Ribosome hibernation promoting factor/RaiA
IPR032528 - Sigma 54 modulation/S30EA ribosomal protein, C-terminal
IPR034694 - Ribosome hibernation promoting factor, long/plastid
IPR036567 - Ribosome hibernation promotion factor-like
IPR038416 - Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576623.1 Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]5.6e-16497.82Show/hide
Query:  MAALTSSMQTNLLSAHSLTP----SSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSS
        MAALTSSMQTNLLS HSLTP    SSSSSSSSTVSTFPTSF LPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSS
Subjt:  MAALTSSMQTNLLSAHSLTP----SSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSS

Query:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEK
        VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEK
Subjt:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEK

Query:  DSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED
        DSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED
Subjt:  DSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED

Query:  GNAEKIETVTVEVAREASLAE
        GNAEKIETVTV VAREASLAE
Subjt:  GNAEKIETVTVEVAREASLAE

KAG7014676.1 Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-16598.44Show/hide
Query:  MAALTSSMQTNLLSAHSLTP----SSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSS
        MAALTSSMQTNLLSAHSLTP    SSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSS
Subjt:  MAALTSSMQTNLLSAHSLTP----SSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSS

Query:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEK
        VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEK
Subjt:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEK

Query:  DSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED
        DSDHGRHMKGFDRSKIR+PAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED
Subjt:  DSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKED

Query:  GNAEKIETVTVEVAREASLAE
        GNAEKIETVTVEVAREASLAE
Subjt:  GNAEKIETVTVEVAREASLAE

XP_022922607.1 ribosome-binding factor PSRP1, chloroplastic [Cucurbita moschata]1.1e-167100Show/hide
Query:  MAALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLI
        MAALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLI
Subjt:  MAALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLI

Query:  VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDH
        VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDH
Subjt:  VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDH

Query:  GRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAE
        GRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAE
Subjt:  GRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAE

Query:  KIETVTVEVAREASLAE
        KIETVTVEVAREASLAE
Subjt:  KIETVTVEVAREASLAE

XP_022984371.1 ribosome-binding factor PSRP1, chloroplastic [Cucurbita maxima]8.6e-15798.99Show/hide
Query:  SSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKV
        SSSSSSSSTVSTFPTSFSLPTSTNSAVLK HALSSHASAFFNSCNHCFRTIV+APRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKV
Subjt:  SSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKV

Query:  GKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVV
        GKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVV
Subjt:  GKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVV

Query:  EDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAEKIETVTVEVAREASLAE
        EDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE+GNAEKIETVTVEVAREASLAE
Subjt:  EDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAEKIETVTVEVAREASLAE

XP_023551717.1 ribosome-binding factor PSRP1, chloroplastic [Cucurbita pepo subsp. pepo]1.9e-16498.42Show/hide
Query:  MAALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLI
        MAALTSSMQTNLLSAHSLTP  SSSSS+TVSTFPTSFSLPTSTNSAVLK HALSSHASAFFNSCNHCFRTIV+APRKRHATRSFSIRMSWDGPLSSVKLI
Subjt:  MAALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLI

Query:  VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDH
        VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDH
Subjt:  VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDH

Query:  GRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAE
        GRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAE
Subjt:  GRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAE

Query:  KIETVTVEVAREASLAE
        KIETVTVEVAREASLAE
Subjt:  KIETVTVEVAREASLAE

TrEMBL top hitse value%identityAlignment
A0A1S3CCT7 ribosome-binding factor PSRP1, chloroplastic5.9e-13584.86Show/hide
Query:  MAALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLI
        MA LTSSMQ NLLS HSL P     SSSTVS FP  FSL    + + LK HALSS+ASAFFNSC + F TI  A R RHA+ SFSIRM+WDG LSSVKLI
Subjt:  MAALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLI

Query:  VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDH
        VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV+ASIDLVSSI+QRKLRKIKEKDSD 
Subjt:  VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDH

Query:  GRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAE
        GRH+KGFDRSK+REPAPIVVEDEEEEV QEDGGE IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE+G AE
Subjt:  GRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAE

Query:  KIETVTVEVAREASLAE
        K+E VTVE ARE SLAE
Subjt:  KIETVTVEVAREASLAE

A0A5D3BQR1 Ribosome-binding factor PSRP15.9e-13584.86Show/hide
Query:  MAALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLI
        MA LTSSMQ NLLS HSL P     SSSTVS FP  FSL    + + LK HALSS+ASAFFNSC + F TI  A R RHA+ SFSIRM+WDG LSSVKLI
Subjt:  MAALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLI

Query:  VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDH
        VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV+ASIDLVSSI+QRKLRKIKEKDSD 
Subjt:  VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDH

Query:  GRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAE
        GRH+KGFDRSK+REPAPIVVEDEEEEV QEDGGE IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE+G AE
Subjt:  GRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAE

Query:  KIETVTVEVAREASLAE
        K+E VTVE ARE SLAE
Subjt:  KIETVTVEVAREASLAE

A0A6J1CJG5 ribosome-binding factor PSRP1, chloroplastic1.8e-13986.21Show/hide
Query:  MAALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLI
        MA LTSSM TNLLSA         SSSST STFP SFSL TSTNS+ LK H LSSH S FFNSCN CF TI +APR RHA  SF+IRMSWDGPLSSVKLI
Subjt:  MAALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLI

Query:  VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDH
        VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVR EEDAETVYASIDLVSSI+QRKLRKIKEKDSD 
Subjt:  VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDH

Query:  GRHMKGFDRSKIREPAPIVVED--EEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGN
        GRHMKGFDR K+REPAPIVVED  EEEEVS ED GE IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE+G 
Subjt:  GRHMKGFDRSKIREPAPIVVED--EEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGN

Query:  AEKIETVTVEVAREASLAE
        AEK+E VTVE ARE SLAE
Subjt:  AEKIETVTVEVAREASLAE

A0A6J1E3S3 ribosome-binding factor PSRP1, chloroplastic5.3e-168100Show/hide
Query:  MAALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLI
        MAALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLI
Subjt:  MAALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLI

Query:  VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDH
        VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDH
Subjt:  VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDH

Query:  GRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAE
        GRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAE
Subjt:  GRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAE

Query:  KIETVTVEVAREASLAE
        KIETVTVEVAREASLAE
Subjt:  KIETVTVEVAREASLAE

A0A6J1J523 ribosome-binding factor PSRP1, chloroplastic4.2e-15798.99Show/hide
Query:  SSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKV
        SSSSSSSSTVSTFPTSFSLPTSTNSAVLK HALSSHASAFFNSCNHCFRTIV+APRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKV
Subjt:  SSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKV

Query:  GKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVV
        GKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVV
Subjt:  GKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVV

Query:  EDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAEKIETVTVEVAREASLAE
        EDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE+GNAEKIETVTVEVAREASLAE
Subjt:  EDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAEKIETVTVEVAREASLAE

SwissProt top hitse value%identityAlignment
P19954 Ribosome-binding factor PSRP1, chloroplastic1.6e-8957.14Show/hide
Query:  MQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSC----NHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQG
        M T   SA ++ P+ ++S S++++   T    PT+          LSS  S F NSC    N   +++ ++  K +      + MSWDGPLSSVKLI+QG
Subjt:  MQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSC----NHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQG

Query:  KNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRH
        +NLE+++ V+ HVE+KVGK+V KHSHLVREVDVRLS RGG+  KGP++RRCEVTLFTK+HGV+RAEEDAE++Y+SIDLVSSI+QRKLRKIK+K SDHGRH
Subjt:  KNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRH

Query:  MKGFDRSKIREPAPIVVEDEE--EEVSQE------DGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE
        MKGF+RSK+R+P P+ +  EE  EEV         +  + I+E+VRTKYFDMPPLT+ EA+EQL+N+DHDFY FRNEETG+INILYKRK+GGYGLIIPK 
Subjt:  MKGFDRSKIREPAPIVVEDEE--EEVSQE------DGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE

Query:  DGNAEKIETVTVEVAREASLAE
        DG  EK+E++ V+  ++ S AE
Subjt:  DGNAEKIETVTVEVAREASLAE

P47908 Ribosome hibernation promotion factor2.2e-3039.2Show/hide
Query:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEK
        +KL++QG N+ +TE++  +VE K+ KA +       +VDV LSV      +     + EVT++     V+RA+E +E +YASIDLVS  + R+LRK KEK
Subjt:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEK

Query:  DSDHGRHMKGFDRSKIREPAPIVVEDE-EEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK
        +     H++        + + ++ ED   + +  +   E   E+VR KYF MPP+T++EA+EQL+ +DHDFY F N++T  IN++Y R  GGYG+I P+
Subjt:  DSDHGRHMKGFDRSKIREPAPIVVEDE-EEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPK

P74518 Ribosome hibernation promotion factor1.5e-3443.14Show/hide
Query:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRI---RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKI
        +KL++QG N+ +TEA+  +VEEKV +AV+   +L  +VDV LSV      +  RI    + EVT++     V+RA+E +E +YASIDLV+  + R+LRK 
Subjt:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRI---RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKI

Query:  KEK--DSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLI
        KE+  D  HG        S+I E  P+     EE +  +   E   E++R KYF MPP+ +E+A+EQL+ +DHDFY FRN++T EIN++Y R  GGYG+I
Subjt:  KEK--DSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLI

Query:  IPKE
         P +
Subjt:  IPKE

Q4L4H7 Ribosome hibernation promotion factor4.6e-2033.17Show/hide
Query:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEK
        ++  + G NL +T+A++ ++E+K+GK ++++ + V      + V+  +        + EVT+   K+  +RAEE  + +YA IDLV+S ++R++RK K +
Subjt:  VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEK

Query:  -DSDHGRHMKGFDRSKIREPAPIVVEDEE------EEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYG
         +  H  H          EP   V E +E      ++V+ E   ++  EI+R+K F + P+  EEA+ Q++ + HDFY F + ET   +I+YKRKDG YG
Subjt:  -DSDHGRHMKGFDRSKIREPAPIVVEDEE------EEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYG

Query:  LI
        LI
Subjt:  LI

Q9RVE7 Ribosome hibernation promotion factor2.7e-2034.85Show/hide
Query:  VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDH
        + G+N+E+TE ++++VEEK+ + + +++  + +  V L+VR  +     R  R EV L     G++RAEE    +YA+ID  S +++R+LRK K      
Subjt:  VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDH

Query:  GRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAID-------EIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLI
         R+MK     +  EP P      E EV+ +  G A+D       EIVR K F++ P++ E+A+ Q++ + HDFY F++ + G+  ++Y+R+DG YGLI
Subjt:  GRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAID-------EIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLI

Arabidopsis top hitse value%identityAlignment
AT5G24490.1 30S ribosomal protein, putative3.3e-9872.98Show/hide
Query:  RKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV
        R  +   S +++MSWDGPL+SVKLI+QGKNLEL+E +K+HVEEKVGK+VQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV
Subjt:  RKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV

Query:  YASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPA-PIVVEDEEEEV-----SQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGF
        YA IDLVS+I+QRKLRKIKEKDSDHGRHMKGF+R K+REP    VVED E+        +E+  + I EIVRTK F+MPPLTV EA+EQL+ + HDFYGF
Subjt:  YASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPA-PIVVEDEEEEV-----SQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGF

Query:  RNEETGEINILYKRKDGGYGLIIPKEDGNAEKIETVTVEVAREASLAE
        +NEETGEINI+YKRK+GGYGLIIPK+DG AEK+E +  E   E S AE
Subjt:  RNEETGEINILYKRKDGGYGLIIPKEDGNAEKIETVTVEVAREASLAE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCTCTCACCTCTTCTATGCAAACGAATCTCCTCTCCGCCCATTCCTTAACGCCTTCTTCTTCTTCTTCTTCTTCTTCTACAGTTTCTACTTTTCCCACCTCCTT
CTCTCTTCCCACCTCTACCAACTCCGCTGTTCTCAAAACTCACGCTCTCTCTTCCCATGCTTCTGCCTTCTTCAACTCCTGCAACCACTGCTTTCGGACCATTGTGGTAG
CACCACGCAAACGTCATGCCACAAGATCTTTCAGTATTCGGATGTCCTGGGACGGCCCTCTCTCCTCCGTCAAATTAATTGTTCAAGGCAAAAATTTGGAGTTGACTGAG
GCAGTTAAGAAGCACGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGACTATCAGTTAGAGGTGGTGAGTTTGGGAA
GGGCCCAAGAATTAGAAGATGCGAGGTTACTTTATTCACGAAGAAGCATGGAGTTGTACGAGCAGAGGAAGATGCCGAGACCGTGTATGCAAGCATTGATTTGGTATCTT
CCATCATGCAGAGAAAGCTGAGAAAGATTAAAGAGAAAGATTCAGATCATGGCCGGCACATGAAAGGATTTGACAGATCGAAAATAAGAGAACCTGCGCCAATAGTAGTT
GAAGATGAGGAAGAAGAGGTTTCTCAGGAAGATGGTGGAGAAGCTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCGCCGTTGACAGTTGAAGAAGCAATCGA
ACAACTAAAGAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATCATCCCAA
AAGAAGATGGCAATGCTGAGAAAATAGAAACTGTGACGGTTGAAGTAGCCAGAGAAGCCTCCTTGGCGGAATGA
mRNA sequenceShow/hide mRNA sequence
TCCTCTAACCTACAAAATTGAAGTTTAAATTACATTTATTTAAGAAGATTGATGCTGCTGCAGTGGCACGGGATTCGTCCTGCGTCCACAAAAAGGCCTCGCTTTCTTTA
TCCATCTGTTTCCCTTCTCTCCTTGTTTCTTCAGTTTTCAAATTCCTGTTCCCATTCCCATGGCCGCTCTCACCTCTTCTATGCAAACGAATCTCCTCTCCGCCCATTCC
TTAACGCCTTCTTCTTCTTCTTCTTCTTCTTCTACAGTTTCTACTTTTCCCACCTCCTTCTCTCTTCCCACCTCTACCAACTCCGCTGTTCTCAAAACTCACGCTCTCTC
TTCCCATGCTTCTGCCTTCTTCAACTCCTGCAACCACTGCTTTCGGACCATTGTGGTAGCACCACGCAAACGTCATGCCACAAGATCTTTCAGTATTCGGATGTCCTGGG
ACGGCCCTCTCTCCTCCGTCAAATTAATTGTTCAAGGCAAAAATTTGGAGTTGACTGAGGCAGTTAAGAAGCACGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCAC
AGTCACTTAGTGAGAGAAGTAGATGTCAGACTATCAGTTAGAGGTGGTGAGTTTGGGAAGGGCCCAAGAATTAGAAGATGCGAGGTTACTTTATTCACGAAGAAGCATGG
AGTTGTACGAGCAGAGGAAGATGCCGAGACCGTGTATGCAAGCATTGATTTGGTATCTTCCATCATGCAGAGAAAGCTGAGAAAGATTAAAGAGAAAGATTCAGATCATG
GCCGGCACATGAAAGGATTTGACAGATCGAAAATAAGAGAACCTGCGCCAATAGTAGTTGAAGATGAGGAAGAAGAGGTTTCTCAGGAAGATGGTGGAGAAGCTATTGAT
GAGATTGTTCGGACAAAATACTTCGATATGCCGCCGTTGACAGTTGAAGAAGCAATCGAACAACTAAAGAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAAC
TGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATCATCCCAAAAGAAGATGGCAATGCTGAGAAAATAGAAACTGTGACGGTTGAAGTAGCCA
GAGAAGCCTCCTTGGCGGAATGA
Protein sequenceShow/hide protein sequence
MAALTSSMQTNLLSAHSLTPSSSSSSSSTVSTFPTSFSLPTSTNSAVLKTHALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTE
AVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVV
EDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEDGNAEKIETVTVEVAREASLAE