; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh16G002230 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G002230
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA-directed RNA polymerase III subunit rpc4-like
Genome locationCmo_Chr16:985512..988413
RNA-Seq ExpressionCmoCh16G002230
SyntenyCmoCh16G002230
Gene Ontology termsGO:0006383 - transcription by RNA polymerase III (biological process)
GO:0006412 - translation (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsIPR007811 - DNA-directed RNA polymerase III subunit RPC4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576814.1 DNA-directed RNA polymerase III subunit RPC4, partial [Cucurbita argyrosperma subsp. sororia]2.4e-17899.07Show/hide
Query:  MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKD
        MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKD
Subjt:  MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKD

Query:  IEPESAEDEELILPPPMDFEEYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSIPALDLGLLDENS
        IEPESAEDEE ILP PMDFEEYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSIPALDLGLLDENS
Subjt:  IEPESAEDEELILPPPMDFEEYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSIPALDLGLLDENS

Query:  ENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL
        ENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDL+NLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL
Subjt:  ENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL

Query:  GEIGKRVVVTPDIGSLLNSMTDLG
        GEIGKRVVVTPDIGSLLNSMTDLG
Subjt:  GEIGKRVVVTPDIGSLLNSMTDLG

KAG7014838.1 DNA-directed RNA polymerase III subunit RPC4 [Cucurbita argyrosperma subsp. argyrosperma]2.6e-18099.69Show/hide
Query:  MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKD
        MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKD
Subjt:  MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKD

Query:  IEPESAEDEELILPPPMDFEEYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSIPALDLGLLDENS
        IEPESAEDEELILPPPMDFEEYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSIPALDLGLLDENS
Subjt:  IEPESAEDEELILPPPMDFEEYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSIPALDLGLLDENS

Query:  ENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL
        ENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDL+NLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL
Subjt:  ENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL

Query:  GEIGKRVVVTPDIGSLLNSMTDLG
        GEIGKRVVVTPDIGSLLNSMTDLG
Subjt:  GEIGKRVVVTPDIGSLLNSMTDLG

XP_022922968.1 DNA-directed RNA polymerase III subunit rpc4-like [Cucurbita moschata]8.8e-181100Show/hide
Query:  MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKD
        MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKD
Subjt:  MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKD

Query:  IEPESAEDEELILPPPMDFEEYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSIPALDLGLLDENS
        IEPESAEDEELILPPPMDFEEYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSIPALDLGLLDENS
Subjt:  IEPESAEDEELILPPPMDFEEYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSIPALDLGLLDENS

Query:  ENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL
        ENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL
Subjt:  ENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL

Query:  GEIGKRVVVTPDIGSLLNSMTDLG
        GEIGKRVVVTPDIGSLLNSMTDLG
Subjt:  GEIGKRVVVTPDIGSLLNSMTDLG

XP_022985496.1 DNA-directed RNA polymerase III subunit rpc4-like [Cucurbita maxima]8.2e-17195.68Show/hide
Query:  MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKD
        MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDV GNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRK D
Subjt:  MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKD

Query:  IEPESAEDEELILPPPMDFEEYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSIPALDLGLLDENS
        IEPESAEDEELILP P+DFEEYGKNLNEKTEDATKNTKDYKEPW+ HNSYYPTTLPLRMP+SGDPEMLDEAEFGQDVMDREYDENS+IPALDLGLLDENS
Subjt:  IEPESAEDEELILPPPMDFEEYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSIPALDLGLLDENS

Query:  ENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL
        ENTRYFFQLPA LPFPKRSSTSTGKEKVGNLRSSIST SSELGDL+NLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQC DL
Subjt:  ENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL

Query:  GEIGKRVVVTPDIGSLLNSMTDLG
        G+IGKRVVVTPDIGSLLNS TDLG
Subjt:  GEIGKRVVVTPDIGSLLNSMTDLG

XP_023551929.1 DNA-directed RNA polymerase III subunit rpc4-like [Cucurbita pepo subsp. pepo]8.8e-17396.6Show/hide
Query:  MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKD
        MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRK D
Subjt:  MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKD

Query:  IEPESAEDEELILPPPMDFEEYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSIPALDLGLLDENS
         EPESAEDEELI P PMDFEEYGKNLNEKTEDA KNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPE+LDEAEFGQDVMDRE DENS+IPALDLGLLDENS
Subjt:  IEPESAEDEELILPPPMDFEEYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSIPALDLGLLDENS

Query:  ENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL
        ENTRYFFQLPA LPFPKRSSTSTGKEKVGNLRSSIST SSELGDL+NLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL
Subjt:  ENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL

Query:  GEIGKRVVVTPDIGSLLNSMTDLG
        GEIGKRVVVTPDIGSLLNSMTDLG
Subjt:  GEIGKRVVVTPDIGSLLNSMTDLG

TrEMBL top hitse value%identityAlignment
A0A0A0KZ61 Uncharacterized protein4.8e-13275.52Show/hide
Query:  MKNPDPSPPRRKIKFAPKSTPRRRPPPAP--KTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRK
        MKN DPSPPRRK+KFAPKS+ R+RPPP P  KTEDED  G VAQTRYLLRRA ENLGKR NKVEKKSSVQVAFGPGA S   SSSIRTYGVPK+ N SRK
Subjt:  MKNPDPSPPRRKIKFAPKSTPRRRPPPAP--KTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRK

Query:  KDIEPESAEDEELILPPPMDFEEYGKNLNEKTEDA----------TKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSI
         DIEPE  EDEE +LP   D  E GK  ++KT+D           TK  +DYKEPWDY NSYYPTTLPLRMPYSGDPE LDEAEFGQDVM+REYDENS I
Subjt:  KDIEPESAEDEELILPPPMDFEEYGKNLNEKTEDA----------TKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSI

Query:  PALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVV
        PALDLGLLDEN+E+T+YFFQLPA LP PK+SST+TGKEKVGN RSS ST+SS+L DL+ L  G MGKLLIYKSGA+KLRLGD LYDVSSG +CSFLQHVV
Subjt:  PALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVV

Query:  AINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDL
        AINT++GQCCDLG+IG RVVVTPDI SLLNS+T+L
Subjt:  AINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDL

A0A1S3BYJ9 DNA-directed RNA polymerase III subunit rpc4-like4.8e-13276.12Show/hide
Query:  MKNPDPSPPRRKIKFAPKSTPRRRPPPAP--KTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRK
        MKN D SPPRRK+KFAPKS+ RRRPPP P  KTEDED  G VAQTRYLLRRA ENLGKR NKVEKKSSVQVAFGPGA S   SSSIRTYGVPK+ N SRK
Subjt:  MKNPDPSPPRRKIKFAPKSTPRRRPPPAP--KTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRK

Query:  KDIEPESAEDEELILPPPMDFEEYGKNLNEKTED----------ATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSI
         DIEPE  EDEE +LP  MD  E GK  ++KT+D           TK  +DYKEPWDY NSYYPTTLPLRMPYSGD E LDEAEFGQD M+REYDENS I
Subjt:  KDIEPESAEDEELILPPPMDFEEYGKNLNEKTED----------ATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSI

Query:  PALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVV
        PALDLGL DEN+ENT+YFFQLPA LP PK+SST+TGKEKVGN RSS ST+SS+L DL+ L  G MGKLLIYKSGA+KLRLGD LYDVSSG DCSFLQHVV
Subjt:  PALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVV

Query:  AINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDL
        AINT+KGQCCDLG+IGKRVVVTPDI SLLNS+T+L
Subjt:  AINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDL

A0A5A7TN83 DNA-directed RNA polymerase III subunit rpc4-like9.6e-13376.12Show/hide
Query:  MKNPDPSPPRRKIKFAPKSTPRRRPPPAP--KTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRK
        MKN D SPPRRK+KFAPKS+ RRRPPP P  KTEDED  G VAQTRYLLRRA ENLGKR NKVE+KSSVQVAFGPGA S   SSSIRTYGVPK+ N SRK
Subjt:  MKNPDPSPPRRKIKFAPKSTPRRRPPPAP--KTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRK

Query:  KDIEPESAEDEELILPPPMDFEEYGKNLNEKTED----------ATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSI
         DIEPE  EDEE +LP  MD  E GK  ++KT+D           TK  +DYKEPWDY NSYYPTTLPLRMPYSGDPE LDEAEFGQD M+REYDENS I
Subjt:  KDIEPESAEDEELILPPPMDFEEYGKNLNEKTED----------ATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSI

Query:  PALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVV
        PALDLGL DEN+ENT+YFFQLPA LP PK+SST+TGKEKVGN RSS ST+SS+L DL+ L  G MGKLLIYKSGA+KLRLGD LYDVSSG DCSFLQHVV
Subjt:  PALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVV

Query:  AINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDL
        AINT+KGQCCDLG+IGKRVVVTPDI SLLNS+T+L
Subjt:  AINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDL

A0A6J1E8A8 DNA-directed RNA polymerase III subunit rpc4-like4.2e-181100Show/hide
Query:  MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKD
        MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKD
Subjt:  MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKD

Query:  IEPESAEDEELILPPPMDFEEYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSIPALDLGLLDENS
        IEPESAEDEELILPPPMDFEEYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSIPALDLGLLDENS
Subjt:  IEPESAEDEELILPPPMDFEEYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSIPALDLGLLDENS

Query:  ENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL
        ENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL
Subjt:  ENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL

Query:  GEIGKRVVVTPDIGSLLNSMTDLG
        GEIGKRVVVTPDIGSLLNSMTDLG
Subjt:  GEIGKRVVVTPDIGSLLNSMTDLG

A0A6J1J8D2 DNA-directed RNA polymerase III subunit rpc4-like4.0e-17195.68Show/hide
Query:  MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKD
        MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDV GNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRK D
Subjt:  MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKD

Query:  IEPESAEDEELILPPPMDFEEYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSIPALDLGLLDENS
        IEPESAEDEELILP P+DFEEYGKNLNEKTEDATKNTKDYKEPW+ HNSYYPTTLPLRMP+SGDPEMLDEAEFGQDVMDREYDENS+IPALDLGLLDENS
Subjt:  IEPESAEDEELILPPPMDFEEYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSIPALDLGLLDENS

Query:  ENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL
        ENTRYFFQLPA LPFPKRSSTSTGKEKVGNLRSSIST SSELGDL+NLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQC DL
Subjt:  ENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL

Query:  GEIGKRVVVTPDIGSLLNSMTDLG
        G+IGKRVVVTPDIGSLLNS TDLG
Subjt:  GEIGKRVVVTPDIGSLLNSMTDLG

SwissProt top hitse value%identityAlignment
P05423 DNA-directed RNA polymerase III subunit RPC45.4e-0842.86Show/hide
Query:  LRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAI---NTDKGQCCDLGEIGKRVVVTPDIGSLLN
        L +L  G +GKLLI KSG V+L LG    DV+ G  CSFLQ +V++   ++  G+   LG +  ++V +PD  SLL+
Subjt:  LRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAI---NTDKGQCCDLGEIGKRVVVTPDIGSLLN

P25441 DNA-directed RNA polymerase III subunit RPC41.1e-0528.57Show/hide
Query:  NSENTRYF-FQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELG--------DLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVA
        N++  R+  FQLP  LP  +R +    KE +    S  S     +           R L  G +G + ++KSG + +++G+ + D+  G + +FLQ V+A
Subjt:  NSENTRYF-FQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELG--------DLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVA

Query:  IN--TDKGQCCDLGEIGKRVVVTPDI
        ++   D      LG +  ++VVTP I
Subjt:  IN--TDKGQCCDLGEIGKRVVVTPDI

Q5E9Z7 DNA-directed RNA polymerase III subunit RPC42.1e-0742.86Show/hide
Query:  LRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAI---NTDKGQCCDLGEIGKRVVVTPDIGSLLN
        L +L  G +GKLLI KSG V+L LG    DV+ G  CSFLQ +V++   ++  G    LG I  ++V +P+  SLL+
Subjt:  LRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAI---NTDKGQCCDLGEIGKRVVVTPDIGSLLN

Q8T1V7 DNA-directed RNA polymerase III subunit rpc49.6e-0535.06Show/hide
Query:  LRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKG-----QCCDLGEIGKRVVVTPDIGSL
        ++ +P G +G L IYKSG   L++G   YD+SSG    FL+ V    T  G      C  LG   + +V  P I  +
Subjt:  LRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKG-----QCCDLGEIGKRVVVTPDIGSL

Q91WD1 DNA-directed RNA polymerase III subunit RPC44.2e-0842.86Show/hide
Query:  LRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAI---NTDKGQCCDLGEIGKRVVVTPDIGSLLN
        L +L  G +GKLLI KSG V+L LG    DV+ G  CSFLQ +V++   ++  G+   LG +  ++V +PD  SLL+
Subjt:  LRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAI---NTDKGQCCDLGEIGKRVVVTPDIGSLLN

Arabidopsis top hitse value%identityAlignment
AT4G25180.1 RNA polymerase III RPC41.6e-4739.63Show/hide
Query:  DPSPPRRKIKFAPK-STPRRRPPPAP--KTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDI
        D    + K +F P    P RR P AP   TE E+   N+  +R   RR    +G+R     K SS +VAF P  +      +IR++GVPK  +     D+
Subjt:  DPSPPRRKIKFAPK-STPRRRPPPAP--KTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDI

Query:  EPESAEDEELILPPPMDFEEYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSIPALDLGLLD-ENS
         P S      ILP         ++  E     T+   DY EPWDY NSYYPT LPLR P SGD E+LD+ EFG+   +R+YDEN+   A +LGL   ++S
Subjt:  EPESAEDEELILPPPMDFEEYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSIPALDLGLLD-ENS

Query:  ENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL
        +   + F++P CLP  K+++ +T K  V    S IS           LP G+MGK+L+YKSGAVKL++GD L+DVS G        VVAI+     C  +
Subjt:  ENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL

Query:  GEIGKRVVVTPDIGSLLNSMTDL
        G   K V VTPD+ SLLN  +D+
Subjt:  GEIGKRVVVTPDIGSLLNSMTDL

AT5G09380.1 RNA polymerase III RPC46.3e-4436.99Show/hide
Query:  DPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPE
        +  PP RK+KFAPK+ P+R P P  K E  +   N AQ   LLRR  E   ++    +K  + QVA+  G  +++ S+        K  N S        
Subjt:  DPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPE

Query:  SAEDEELILPPPMDFEEYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSIPALDLGLLDENSENTR
                         YG    ++ E        YKEPWDY+ SYYP TLP+R PY+GDPE+LD  EF Q      + E+S   A +LGL++++ E   
Subjt:  SAEDEELILPPPMDFEEYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSIPALDLGLLDENSENTR

Query:  YFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDLGEIG
        +F +LP+    P  S+ +   E   N++  +     +  DL+ LP GYMGKLL+YKSGAVK++LG+ LYDVS GL   F Q V+ +NT++  CC +G++ 
Subjt:  YFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDLGEIG

Query:  KRVVVTPDIGSLLNSMTDL
        K  V+TPDI S+L  + ++
Subjt:  KRVVVTPDIGSLLNSMTDL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAATCCCGATCCATCTCCTCCGCGCAGAAAGATCAAATTCGCCCCAAAATCCACACCGCGCAGAAGGCCACCCCCCGCTCCAAAAACTGAAGACGAAGATGTAGT
TGGTAATGTTGCTCAAACTCGCTACCTCTTACGCCGTGCGACTGAGAATCTTGGAAAACGAGGGAACAAAGTCGAGAAAAAATCTTCTGTGCAAGTTGCATTCGGGCCTG
GTGCGGCATCGGCATCAGAATCATCTTCTATTAGAACGTATGGAGTCCCCAAAATCGGAAACAGTAGCAGAAAAAAGGATATTGAGCCTGAATCTGCTGAAGATGAGGAA
CTTATCTTGCCTCCGCCTATGGATTTCGAAGAATATGGGAAAAATCTCAATGAAAAAACAGAGGATGCAACCAAGAACACGAAGGATTACAAAGAACCATGGGATTACCA
TAATTCTTACTATCCTACTACGCTTCCTTTACGGATGCCTTACTCTGGAGATCCTGAAATGCTTGATGAAGCTGAGTTCGGGCAGGATGTGATGGATAGGGAGTATGATG
AGAACTCTAGTATACCTGCCTTGGATCTTGGATTGCTGGATGAAAATTCTGAGAATACTAGGTACTTTTTTCAGCTTCCTGCTTGTCTTCCTTTTCCCAAACGATCATCT
ACTTCAACGGGAAAGGAGAAGGTAGGAAACTTGAGATCTTCAATCAGCACTGCCTCATCAGAGCTGGGCGATTTACGGAACCTGCCCGGTGGATATATGGGGAAACTACT
GATATACAAGAGTGGAGCTGTTAAGTTGAGGCTGGGAGATACACTTTACGATGTTTCTTCTGGTTTAGACTGCAGTTTTCTTCAACATGTTGTGGCGATCAACACCGACA
AGGGACAGTGCTGCGATCTCGGAGAAATTGGCAAACGAGTCGTGGTGACACCAGATATAGGTTCCCTCTTGAATTCAATGACTGACTTGGGATGA
mRNA sequenceShow/hide mRNA sequence
AGGGTTCGAATCCTTCTCATTTTTCTTTTTCACCATTTTCCCTCTTTCCCTTCGTCATCTTCAACCTCAAGCTGATGAAGAATCCCGATCCATCTCCTCCGCGCAGAAAG
ATCAAATTCGCCCCAAAATCCACACCGCGCAGAAGGCCACCCCCCGCTCCAAAAACTGAAGACGAAGATGTAGTTGGTAATGTTGCTCAAACTCGCTACCTCTTACGCCG
TGCGACTGAGAATCTTGGAAAACGAGGGAACAAAGTCGAGAAAAAATCTTCTGTGCAAGTTGCATTCGGGCCTGGTGCGGCATCGGCATCAGAATCATCTTCTATTAGAA
CGTATGGAGTCCCCAAAATCGGAAACAGTAGCAGAAAAAAGGATATTGAGCCTGAATCTGCTGAAGATGAGGAACTTATCTTGCCTCCGCCTATGGATTTCGAAGAATAT
GGGAAAAATCTCAATGAAAAAACAGAGGATGCAACCAAGAACACGAAGGATTACAAAGAACCATGGGATTACCATAATTCTTACTATCCTACTACGCTTCCTTTACGGAT
GCCTTACTCTGGAGATCCTGAAATGCTTGATGAAGCTGAGTTCGGGCAGGATGTGATGGATAGGGAGTATGATGAGAACTCTAGTATACCTGCCTTGGATCTTGGATTGC
TGGATGAAAATTCTGAGAATACTAGGTACTTTTTTCAGCTTCCTGCTTGTCTTCCTTTTCCCAAACGATCATCTACTTCAACGGGAAAGGAGAAGGTAGGAAACTTGAGA
TCTTCAATCAGCACTGCCTCATCAGAGCTGGGCGATTTACGGAACCTGCCCGGTGGATATATGGGGAAACTACTGATATACAAGAGTGGAGCTGTTAAGTTGAGGCTGGG
AGATACACTTTACGATGTTTCTTCTGGTTTAGACTGCAGTTTTCTTCAACATGTTGTGGCGATCAACACCGACAAGGGACAGTGCTGCGATCTCGGAGAAATTGGCAAAC
GAGTCGTGGTGACACCAGATATAGGTTCCCTCTTGAATTCAATGACTGACTTGGGATGAACTTGAAGAACAGGCCTGCGGATAGAACAACCATCTCAAAAGGAACAGGAA
AGAACGGCTAATCCTTACAATGTCAAAATGGATATGACCAATGGCTGTGTACTGAAAATGCTCACTAGGTAAGGAACTTGCGTTTCGCTGCTCTTAGGATGTCACATTAT
TCATCAAACTGCCTCCTTTGTTAATCCAATGCAGCAAGAACGTGTTCATTCTCTCTAATTTCTAGCTGTGTAGTAGTAAACAATGTGGATAACTGTAAATGTTTTTTTGT
TTTCTTTTTTAATGGTAAGTTAAGCTATGCTCT
Protein sequenceShow/hide protein sequence
MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEE
LILPPPMDFEEYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSS
TSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDLG