; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh16G002460 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G002460
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionpre-mRNA-splicing factor CWC25 homolog
Genome locationCmo_Chr16:1086052..1086966
RNA-Seq ExpressionCmoCh16G002460
SyntenyCmoCh16G002460
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005684 - U2-type spliceosomal complex (cellular component)
InterPro domainsIPR019339 - CBF1-interacting co-repressor CIR, N-terminal domain
IPR022209 - Pre-mRNA splicing factor


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576831.1 Pre-mRNA-splicing factor CWC25-like protein, partial [Cucurbita argyrosperma subsp. sororia]2.2e-7098.63Show/hide
Query:  MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTA
        MALKFLNKKGWHTG+LRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTA
Subjt:  MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTA

Query:  AAAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ
        AAA EPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ
Subjt:  AAAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ

XP_008453851.1 PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Cucumis melo]2.1e-6595.21Show/hide
Query:  MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTA
        MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQI EEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGK S+SDGFKSLETLP ++STA
Subjt:  MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTA

Query:  AAAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ
        AAA EPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ
Subjt:  AAAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ

XP_022922575.1 LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog [Cucurbita moschata]1.1e-71100Show/hide
Query:  MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTA
        MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTA
Subjt:  MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTA

Query:  AAAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ
        AAAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ
Subjt:  AAAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ

XP_023551879.1 LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog, partial [Cucurbita pepo subsp. pepo]8.2e-7098.62Show/hide
Query:  ALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAA
        ALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAA
Subjt:  ALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAA

Query:  AAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ
        AA EPSSSKEAAAPGALFEDKPHSAND+WRKLHSDPLLIIRQREQ
Subjt:  AAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ

XP_038896474.1 pre-mRNA-splicing factor CWC25 homolog [Benincasa hispida]2.7e-6594.52Show/hide
Query:  MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTA
        MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQI EEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGK S+SDGFKSLETLP ++STA
Subjt:  MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTA

Query:  AAAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ
        AAA EPSSSKEAA PGALFEDKPHSANDAWRKLHSDPLLIIRQREQ
Subjt:  AAAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ

TrEMBL top hitse value%identityAlignment
A0A0A0KU62 Cir_N domain-containing protein8.6e-6593.84Show/hide
Query:  MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTA
        MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQI EEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGK S+SDGFKSLETLP ++STA
Subjt:  MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTA

Query:  AAAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ
        AAA EPSSSKEAA PGALFEDKPHSAND WRKLHSDPLLIIRQREQ
Subjt:  AAAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ

A0A1S3BY15 pre-mRNA-splicing factor CWC25 homolog1.0e-6595.21Show/hide
Query:  MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTA
        MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQI EEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGK S+SDGFKSLETLP ++STA
Subjt:  MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTA

Query:  AAAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ
        AAA EPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ
Subjt:  AAAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ

A0A5A7TSZ0 Pre-mRNA-splicing factor CWC25-like protein1.0e-6595.21Show/hide
Query:  MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTA
        MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQI EEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGK S+SDGFKSLETLP ++STA
Subjt:  MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTA

Query:  AAAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ
        AAA EPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ
Subjt:  AAAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ

A0A6J1CHZ1 pre-mRNA-splicing factor CWC25 homolog3.3e-6492.47Show/hide
Query:  MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTA
        MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQI EEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGS+SDGFKSLETLP +TS  
Subjt:  MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTA

Query:  AAAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ
         A  EPSSSKEAAAPGALFE+KPHSAND+WRKLHSDPLLIIRQREQ
Subjt:  AAAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ

A0A6J1E963 LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog5.6e-72100Show/hide
Query:  MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTA
        MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTA
Subjt:  MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTA

Query:  AAAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ
        AAAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ
Subjt:  AAAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ

SwissProt top hitse value%identityAlignment
Q4P6I3 Pre-mRNA-splicing factor CWC256.4e-0931.72Show/hide
Query:  KKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSD------GFKSLETLPTTTSTAA
        KK WH     N E VWK E++   E+KKL+ELR++  +E+E Q+ + LQE+AG   + +R+D++Y +    G GS ++      G K ++ L        
Subjt:  KKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSD------GFKSLETLPTTTSTAA

Query:  AAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ
           E     +      +     +SA D   K+  DP+L I+Q+EQ
Subjt:  AAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ

Q5B0I1 Pre-mRNA-splicing factor cwc257.1e-0830.34Show/hide
Query:  KKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYE--SGLAVGKGSNSDGF----KSLETLPTTTSTAA
        KK WH   LRN E VW  E++   E+K++D+L+++  EE++ QE + LQE AG   + +R+D++Y+  S  +       +G+    + ++ +      + 
Subjt:  KKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYE--SGLAVGKGSNSDGF----KSLETLPTTTSTAA

Query:  AAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ
           + +++   AA G       H+  D   K+ +DPLL IR+REQ
Subjt:  AAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ

Q9DBF7 Pre-mRNA-splicing factor CWC25 homolog6.6e-1439.04Show/hide
Query:  KKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLV-PKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAAPEP
        KK WH  +LRN+E VWKAEQKHEAE+KK++EL++++ EE+ R+E +   E  G V  K+E+LD++Y+     G G   +  + L   P          E 
Subjt:  KKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLV-PKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAAPEP

Query:  S---SSKEAAAPGALFEDKPHSAN---DAWRKLHSDPLLIIRQREQ
            SS+    PG++F   P  AN   D   K+  DPL IIR++E+
Subjt:  S---SSKEAAAPGALFEDKPHSAN---DAWRKLHSDPLLIIRQREQ

Q9NXE8 Pre-mRNA-splicing factor CWC25 homolog5.1e-1439.04Show/hide
Query:  KKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLV-PKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAAPEP
        KK WH  +LRN+E VWKAEQKHEAE+KK++EL++++ EE+ R+E +   E  G V  K+E+LD++Y+     G G   +  + L   P          E 
Subjt:  KKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLV-PKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAAPEP

Query:  S---SSKEAAAPGALFEDKPHSAN---DAWRKLHSDPLLIIRQREQ
            SS+    PG++F   P  AN   D   K+  DPL IIR++E+
Subjt:  S---SSKEAAAPGALFEDKPHSAN---DAWRKLHSDPLLIIRQREQ

Q9Y805 Pre-mRNA-splicing factor cwf257.1e-0832.62Show/hide
Query:  KKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAAPEPS
        KK WH   +RN E VWK EQ H+ E K++++LR++I EE++  E   LQE AG   +++R++++Y   +    G N D  +  E L           +  
Subjt:  KKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAAPEPS

Query:  SSKEAAAPGALF--EDKPHSANDAWRKLHSDPLLIIRQREQ
          +  +     F      +S  D   KL  DPLL I+Q+EQ
Subjt:  SSKEAAAPGALF--EDKPHSANDAWRKLHSDPLLIIRQREQ

Arabidopsis top hitse value%identityAlignment
AT2G44195.1 CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor3.8e-3355.03Show/hide
Query:  MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQ-ERLDFLYESGLAVGKGSNSDGFKSLETLPTTTST
        MALKFLNKKGWHTGS+RN+E VWKAEQKHEAEQ+K++          ER EFR +QEQAGLVP++ ERL+FLY+  LAV K + S           ++  
Subjt:  MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQ-ERLDFLYESGLAVGKGSNSDGFKSLETLPTTTST

Query:  AAAAPEPSSSKEAAAPGALF--EDKPHSANDAWRKLHSDPLLIIRQREQ
                    A  PGALF  +DK HSAND+WRK HSDPLL+IRQ+EQ
Subjt:  AAAAPEPSSSKEAAAPGALF--EDKPHSANDAWRKLHSDPLLIIRQREQ

AT2G44200.1 CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor2.1e-4767.81Show/hide
Query:  MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTA
        M +KFLNKKGWHTGSLRNIE VWKAEQK EAEQKKL+ELR QI +E+ER EFR LQEQAGL+P+QERL+FLY+SGLAVGKGS S    S +      + +
Subjt:  MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTA

Query:  AAAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ
         A    S   + +APGALFE+K  SAND+WRKLHSDPLL+IRQREQ
Subjt:  AAAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATTGAAGTTCTTGAACAAGAAAGGATGGCACACTGGCAGTCTCCGGAATATAGAGAACGTGTGGAAGGCGGAGCAAAAGCATGAGGCCGAGCAGAAGAAGTTGGA
CGAACTCCGCAAGCAAATCCATGAGGAGAAGGAGCGTCAAGAGTTTCGTCTTCTCCAAGAACAGGCCGGCCTCGTTCCGAAGCAGGAAAGATTGGATTTTCTTTATGAAT
CGGGTTTGGCAGTCGGGAAAGGTAGCAATTCCGATGGATTTAAGAGCCTCGAAACTCTACCTACTACTACATCTACTGCTGCGGCTGCCCCTGAACCATCTAGTTCCAAG
GAAGCCGCTGCCCCCGGTGCTCTGTTTGAGGATAAGCCTCATTCTGCAAATGACGCATGGAGGAAGCTCCATTCTGATCCCTTGCTCATCATTCGGCAGCGTGAGCAATA
A
mRNA sequenceShow/hide mRNA sequence
GGGCCTCGGTCAAGATTACTATTGGGCCATGAAATTGCGCGCGAGAAGAAGTGGCGGCGGCGACCGTCCGATTCCCAATCAGAAAATCGGATTCTTCCCCACAAAACCAC
CGCGCCGGTGGCGGAAAATCTGATCCTCAGTTTGAAACTTGATTCGAGACATGGCATTGAAGTTCTTGAACAAGAAAGGATGGCACACTGGCAGTCTCCGGAATATAGAG
AACGTGTGGAAGGCGGAGCAAAAGCATGAGGCCGAGCAGAAGAAGTTGGACGAACTCCGCAAGCAAATCCATGAGGAGAAGGAGCGTCAAGAGTTTCGTCTTCTCCAAGA
ACAGGCCGGCCTCGTTCCGAAGCAGGAAAGATTGGATTTTCTTTATGAATCGGGTTTGGCAGTCGGGAAAGGTAGCAATTCCGATGGATTTAAGAGCCTCGAAACTCTAC
CTACTACTACATCTACTGCTGCGGCTGCCCCTGAACCATCTAGTTCCAAGGAAGCCGCTGCCCCCGGTGCTCTGTTTGAGGATAAGCCTCATTCTGCAAATGACGCATGG
AGGAAGCTCCATTCTGATCCCTTGCTCATCATTCGGCAGCGTGAGCAATAA
Protein sequenceShow/hide protein sequence
MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAAPEPSSSK
EAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ