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CmoCh16G002530 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G002530
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionlate embryogenesis abundant protein At5g17165-like
Genome locationCmo_Chr16:1125218..1131421
RNA-Seq ExpressionCmoCh16G002530
SyntenyCmoCh16G002530
Gene Ontology termsNA
InterPro domainsIPR039291 - Late embryogenesis abundant protein At5g17165-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576842.1 Late embryogenesis abundant protein, partial [Cucurbita argyrosperma subsp. sororia]5.8e-6798.46Show/hide
Query:  MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHT
        MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAH+STYDKNHDEQVRPSIVPDDVIQPQSADKYWAP+PQTGVFGPATINPVAAVANHT
Subjt:  MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHT

Query:  ANGGNYSIVEEEKAWFRPTSLEDSEKPHGF
        ANGGNYSIVEEEKAWFRPTSLEDSEKPHGF
Subjt:  ANGGNYSIVEEEKAWFRPTSLEDSEKPHGF

XP_022922449.1 late embryogenesis abundant protein At5g17165-like [Cucurbita moschata]6.9e-68100Show/hide
Query:  MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHT
        MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHT
Subjt:  MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHT

Query:  ANGGNYSIVEEEKAWFRPTSLEDSEKPHGF
        ANGGNYSIVEEEKAWFRPTSLEDSEKPHGF
Subjt:  ANGGNYSIVEEEKAWFRPTSLEDSEKPHGF

XP_022984594.1 late embryogenesis abundant protein At5g17165-like [Cucurbita maxima]2.4e-6596.15Show/hide
Query:  MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHT
        MAANSRSAGAIAGLRKRITDQIW RDPLRNSAISSAAPKFRRAAH+STYDKNHDEQVRPSIVPDDVIQPQSADKYWAP+PQTGVFGPATINP+AAVANHT
Subjt:  MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHT

Query:  ANGGNYSIVEEEKAWFRPTSLEDSEKPHGF
        A+GGNYSIVEEEKAWFRPTSLEDSEKPHGF
Subjt:  ANGGNYSIVEEEKAWFRPTSLEDSEKPHGF

XP_023552006.1 late embryogenesis abundant protein At5g17165-like [Cucurbita pepo subsp. pepo]9.3e-6595.49Show/hide
Query:  MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINP---VAAVA
        MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAH+STYDKNHDEQVRPSIVPDDVIQPQSADKYWAP+PQTGVFGPATINP   VAAVA
Subjt:  MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINP---VAAVA

Query:  NHTANGGNYSIVEEEKAWFRPTSLEDSEKPHGF
        NHTA+GGNYSIVEEEKAWFRPTSLEDSEKPHGF
Subjt:  NHTANGGNYSIVEEEKAWFRPTSLEDSEKPHGF

XP_038901450.1 late embryogenesis abundant protein At5g17165-like [Benincasa hispida]4.3e-5482.95Show/hide
Query:  MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHT
        MAANSRSAG IAGL KRITDQIW  DPLRNS ISS+APK RRAAH+S YDKN DEQVRPS+VPDDVIQ Q+ADKYWAP+PQTGVFGPA+ NP AA AN  
Subjt:  MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHT

Query:  ANGGNYSIVEEEKAWFRPTSLEDSEKPHG
        A+GGNYS VEEEKAWFRPTSLEDSEKPHG
Subjt:  ANGGNYSIVEEEKAWFRPTSLEDSEKPHG

TrEMBL top hitse value%identityAlignment
A0A1S3BYE5 uncharacterized protein LOC1034944371.4e-5080.92Show/hide
Query:  MAANSRSAGAIAGLRKRITDQIW-NRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVA-AVAN
        MAANSRSAGAIAGL KRITDQIW + D LRNS ISS+APKFRRAAH+S YDKN +EQVRPSIVPDDVIQPQ+ADKYWAP+PQTGVFGP + NP A A AN
Subjt:  MAANSRSAGAIAGLRKRITDQIW-NRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVA-AVAN

Query:  HTANGGNYSIVEEEKAWFRPTSLEDSEKPHG
          A+ GNYS  EEEKAWFRPTSLEDSEKPHG
Subjt:  HTANGGNYSIVEEEKAWFRPTSLEDSEKPHG

A0A6J1CHE9 late embryogenesis abundant protein At5g17165-like4.5e-4981.4Show/hide
Query:  MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHT
        MAANSRSAGAIAGL KRIT+QIW  DPLRNSAISS+APKFRRAAH+S YDKN DEQ RPSIVPD+VIQPQ  DKYWAP+PQTGVFGP T +P AA A   
Subjt:  MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHT

Query:  ANGGNYSIVEEEKAWFRPTSLEDSEKPHG
        ANGG+Y+ VEEEKAWFRPTSLEDSEKPHG
Subjt:  ANGGNYSIVEEEKAWFRPTSLEDSEKPHG

A0A6J1E3E9 late embryogenesis abundant protein At5g17165-like3.3e-68100Show/hide
Query:  MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHT
        MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHT
Subjt:  MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHT

Query:  ANGGNYSIVEEEKAWFRPTSLEDSEKPHGF
        ANGGNYSIVEEEKAWFRPTSLEDSEKPHGF
Subjt:  ANGGNYSIVEEEKAWFRPTSLEDSEKPHGF

A0A6J1FNH5 late embryogenesis abundant protein At5g17165-like isoform X17.2e-4775.38Show/hide
Query:  MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHT
        MAANSRSAGAIAGL KRIT+QIW  D    SAISS+A KFRRAAH+S YDKN DEQVRPSIVPDDVIQPQ+A+KYWAP+P TGVFGP    P AA  +  
Subjt:  MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHT

Query:  ANGGNYSIVEEEKAWFRPTSLEDSEKPHGF
        A+GGN++  EEEKAWFRPTSLEDSEKPHGF
Subjt:  ANGGNYSIVEEEKAWFRPTSLEDSEKPHGF

A0A6J1JAZ8 late embryogenesis abundant protein At5g17165-like1.2e-6596.15Show/hide
Query:  MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHT
        MAANSRSAGAIAGLRKRITDQIW RDPLRNSAISSAAPKFRRAAH+STYDKNHDEQVRPSIVPDDVIQPQSADKYWAP+PQTGVFGPATINP+AAVANHT
Subjt:  MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHT

Query:  ANGGNYSIVEEEKAWFRPTSLEDSEKPHGF
        A+GGNYSIVEEEKAWFRPTSLEDSEKPHGF
Subjt:  ANGGNYSIVEEEKAWFRPTSLEDSEKPHGF

SwissProt top hitse value%identityAlignment
F4KFM8 Late embryogenesis abundant protein At5g171656.1e-1955.17Show/hide
Query:  RAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHTANGGNYSIVEEEKAWFRPTSLEDSEKPH
        R  H+S YDKN +E+++PS VPD++I+P S DKYW+P+PQTGVFGP++    +  A     GG    V EEKAWFRPTSLED +K H
Subjt:  RAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHTANGGNYSIVEEEKAWFRPTSLEDSEKPH

Arabidopsis top hitse value%identityAlignment
AT3G03150.1 unknown protein3.9e-2148.8Show/hide
Query:  SRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHTANGG
        S+S   I  LRK + +    R   R  A +SA    RR+ HSS YDKN ++++  S VPD+VI+P S DKYW+P+P+TGVFGP+T    A     TA G 
Subjt:  SRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHTANGG

Query:  NY-SIVEEEKAWFRPTSLEDSEKPH
        +  + V EE AWFRPTSLEDS+K H
Subjt:  NY-SIVEEEKAWFRPTSLEDSEKPH

AT5G17165.1 unknown protein4.3e-2055.17Show/hide
Query:  RAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHTANGGNYSIVEEEKAWFRPTSLEDSEKPH
        R  H+S YDKN +E+++PS VPD++I+P S DKYW+P+PQTGVFGP++    +  A     GG    V EEKAWFRPTSLED +K H
Subjt:  RAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHTANGGNYSIVEEEKAWFRPTSLEDSEKPH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCTAATTCGAGGAGCGCAGGAGCGATCGCCGGCTTGAGGAAACGAATCACTGACCAGATCTGGAACAGAGATCCACTTCGCAACTCTGCGATCTCTTCCGCTGC
TCCGAAGTTCAGGAGGGCAGCTCACAGTTCAACGTATGACAAGAACCACGACGAGCAAGTCCGACCAAGCATAGTCCCTGATGATGTGATTCAGCCTCAATCTGCTGATA
AGTATTGGGCTCCTAATCCACAAACCGGCGTTTTCGGGCCGGCCACCATCAACCCTGTGGCAGCGGTGGCCAACCATACTGCAAATGGTGGCAACTACTCTATTGTGGAG
GAGGAAAAGGCTTGGTTCCGACCTACCAGTCTTGAGGATTCCGAGAAGCCCCACGGTTTCTAG
mRNA sequenceShow/hide mRNA sequence
TGAGGAAGCTTTTGAGTTTTGTCGCCTTTTGGCTGATTTTAATACGACGCCGTACTTGGCGCACTATATAAAATGAGTTGCCGCGAACGATTAGAATCCAGAATCATAAG
CAATTAATCGCTTGTTCATCCTCATCGTCGCTCTCTCCCTTTTCTCTTAGGCGTCGTTTTTCTGGTTCTTCGTTTTTTCTCTCTCTCTCTTTTTGAGCTTGAATTGTATG
GCCGCTAATTCGAGGAGCGCAGGAGCGATCGCCGGCTTGAGGAAACGAATCACTGACCAGATCTGGAACAGAGATCCACTTCGCAACTCTGCGATCTCTTCCGCTGCTCC
GAAGTTCAGGAGGGCAGCTCACAGTTCAACGTATGACAAGAACCACGACGAGCAAGTCCGACCAAGCATAGTCCCTGATGATGTGATTCAGCCTCAATCTGCTGATAAGT
ATTGGGCTCCTAATCCACAAACCGGCGTTTTCGGGCCGGCCACCATCAACCCTGTGGCAGCGGTGGCCAACCATACTGCAAATGGTGGCAACTACTCTATTGTGGAGGAG
GAAAAGGCTTGGTTCCGACCTACCAGTCTTGAGGATTCCGAGAAGCCCCACGGTTTCTAGGAGCCTGGGGCTTCCCGAGCCATTGTGGTACTTTTGCCCATCAGACATTT
TAGACAACAAGTAGTTAGTTGTTACTAAATAAAGAAGATGGCTGTTTTAGCGGTAGTAAGCATCTGGAGTTGCTCAAGGCTGAGGCAATCTGGCTCAGGATGCTTTTACG
GTGTTGTACCAACTTTATTACGGTGTTGGATGTGGTCTACTTCTCGTTTGACTACGCAAAATAGTGTGGTTTTATAGCTTTATCTCTCCATCCAACAAAAGGTTTACCTC
TCTACTCACTACTGTTTTTTTTTTTAAATATTTTTCTAAATATTATCTTACACGACTTTATATTTTTATTTTACAAGCTCC
Protein sequenceShow/hide protein sequence
MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHTANGGNYSIVE
EEKAWFRPTSLEDSEKPHGF