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CmoCh16G002600 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G002600
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionroot phototropism protein 3-like
Genome locationCmo_Chr16:1150427..1151109
RNA-Seq ExpressionCmoCh16G002600
SyntenyCmoCh16G002600
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576846.1 Root phototropism protein 3, partial [Cucurbita argyrosperma subsp. sororia]4.1e-30100Show/hide
Query:  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
        MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
Subjt:  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
KAG7014867.1 Root phototropism protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma]4.1e-30100Show/hide
Query:  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
        MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
Subjt:  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
XP_022922760.1 root phototropism protein 3-like [Cucurbita moschata]4.1e-30100Show/hide
Query:  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
        MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
Subjt:  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
XP_022984852.1 root phototropism protein 3-like [Cucurbita maxima]4.1e-30100Show/hide
Query:  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
        MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
Subjt:  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
XP_023552480.1 root phototropism protein 3-like [Cucurbita pepo subsp. pepo]7.7e-2996.83Show/hide
Query:  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
        MWESENHSVGFGAG+Y NGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
Subjt:  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
TrEMBL top hitse value%identityAlignment
A0A0A0KZC3 Uncharacterized protein5.4e-2079.37Show/hide
Query:  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
        MWESEN S+   A  Y NGVPPSAKHAL T GF+LRGNSW+VATDIPSDLLV+VEGVNFHLHK
Subjt:  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
A0A1S4E3Y8 root phototropism protein 38.4e-2180.95Show/hide
Query:  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
        MWESEN S+   A DY NGVPPSAKHAL T GF+LRGNSW+VATDIPSDLLV+VEGVNFHLHK
Subjt:  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
A0A5D3CB29 Root phototropism protein 38.4e-2180.95Show/hide
Query:  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
        MWESEN S+   A DY NGVPPSAKHAL T GF+LRGNSW+VATDIPSDLLV+VEGVNFHLHK
Subjt:  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
A0A6J1E9P7 root phototropism protein 3-like2.0e-30100Show/hide
Query:  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
        MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
Subjt:  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
A0A6J1J3A8 root phototropism protein 3-like2.0e-30100Show/hide
Query:  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
        MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
Subjt:  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
SwissProt top hitse value%identityAlignment
Q5KS50 Coleoptile phototropism protein 12.7e-0851.52Show/hide
Query:  MWESENHSVGFGAGDY---GNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
        MWESE+ S G   G     G G     + AL   GF  R  SW+V +DIPSDLLVKV  VNF+LHK
Subjt:  MWESENHSVGFGAGDY---GNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
Q9FMF5 Root phototropism protein 31.5e-1461.76Show/hide
Query:  MWESENH-SVGFGAG---DYGNGVPPSAKH-ALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
        MWESE+   VG G G   +YG+GV  S KH  + T GF+LRG SW VATDIPSDLLVK+  +NFHLHK
Subjt:  MWESENH-SVGFGAG---DYGNGVPPSAKH-ALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
Arabidopsis top hitse value%identityAlignment
AT5G64330.1 Phototropic-responsive NPH3 family protein1.0e-1561.76Show/hide
Query:  MWESENH-SVGFGAG---DYGNGVPPSAKH-ALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
        MWESE+   VG G G   +YG+GV  S KH  + T GF+LRG SW VATDIPSDLLVK+  +NFHLHK
Subjt:  MWESENH-SVGFGAG---DYGNGVPPSAKH-ALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
AT5G64330.2 Phototropic-responsive NPH3 family protein1.0e-1561.76Show/hide
Query:  MWESENH-SVGFGAG---DYGNGVPPSAKH-ALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK
        MWESE+   VG G G   +YG+GV  S KH  + T GF+LRG SW VATDIPSDLLVK+  +NFHLHK
Subjt:  MWESENH-SVGFGAG---DYGNGVPPSAKH-ALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGAATCCGAGAATCATTCTGTTGGTTTTGGTGCTGGAGATTACGGCAATGGCGTCCCCCCTTCCGCCAAACACGCCCTCAACACTCACGGCTTCGACCTCAGAGG
CAACTCATGGCATGTTGCTACTGATATCCCTAGTGACCTTTTAGTAAAAGTTGAGGGTGTGAATTTCCATTTGCACAAGGTGTTGTATAATCAATCTCCTCTGTTTTGA
mRNA sequenceShow/hide mRNA sequence
CTATCTTTAAAAGATAATCTATTTGCTTTGGTAGCACAGGAGAAGCTCTGTTGGTGGTGCTTCCATGGCGGCCCCATTTTGGAGAAGCGAAAGAGAGGGAGAGCATCTGA
AAGAAGCATTATTAATGCAAAAACAAAGCAAAGGGGATGGCAATCAGAATGATCCATCATCTACCCATCACCCCATTTACTTCACACCCACTGAAAAATCAGTGAAGAAG
CCGACAATTCAACCACATAATTCCAATCATCCCATGTGGGTTTCGCCTATTTCCCCTCTATATCGCTCTATCTTCTTCTTCCCCCTCTCCTCTTATTCTTCCCCCCTTTC
TTTTCATCTGTCACTTTCCGATGTGGGAATCCGAGAATCATTCTGTTGGTTTTGGTGCTGGAGATTACGGCAATGGCGTCCCCCCTTCCGCCAAACACGCCCTCAACACT
CACGGCTTCGACCTCAGAGGCAACTCATGGCATGTTGCTACTGATATCCCTAGTGACCTTTTAGTAAAAGTTGAGGGTGTGAATTTCCATTTGCACAAGGTGTTGTATAA
TCAATCTCCTCTGTTTTGA
Protein sequenceShow/hide protein sequence
MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHKVLYNQSPLF