CuGenDBv2

Gene ID	CmoCh16G002610
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	classical arabinogalactan protein 1-like
Genome location	Cmo_Chr16:1158333..1158671
RNA-Seq Expression	CmoCh16G002610
Synteny	CmoCh16G002610
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR044959 - Classical arabinogalactan protein

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022922765.1 classical arabinogalactan protein 1-like [Cucurbita moschata]

3.7e-38

100

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Query:  MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSPAAPTPASSPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGS
        MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSPAAPTPASSPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGS
Subjt:  MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSPAAPTPASSPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGS

Query:  VAVVLYAVVLMI
        VAVVLYAVVLMI
Subjt:  VAVVLYAVVLMI

XP_022985016.1 classical arabinogalactan protein 1-like [Cucurbita maxima]

4.1e-37

98.21

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Query:  MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSPAAPTPASSPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGS
        MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAP ASPSVKSPKSSPAAPTPASSPSTSPSPAASPSSISSPPADAPAPSG+GAASISFSVFGS
Subjt:  MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSPAAPTPASSPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGS

Query:  VAVVLYAVVLMI
        VAVVLYAVVLMI
Subjt:  VAVVLYAVVLMI

XP_023542663.1 classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo]

7.3e-26

76.42

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Query:  MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSP-AAPTPAS----------SPSTSPSPAASPSSISSPPADAPAPSGSG
        MAIR FVVM++VA+LI SAIAQSP+ASPSLSP KSPSKAPS SPSV+SPKSSP AAPTPAS          SPS SPSP+ SPSSISSPPADAPAPSG+ 
Subjt:  MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSP-AAPTPAS----------SPSTSPSPAASPSSISSPPADAPAPSGSG

Query:  AASISFSVFGSVAVVLYAVVLMI
        AASIS S+FGSVA VLYA+VLMI
Subjt:  AASISFSVFGSVAVVLYAVVLMI

XP_023552483.1 classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo]

1.1e-37

99.11

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Query:  MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSPAAPTPASSPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGS
        MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPS SPSVKSPKSSPAAPTPASSPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGS
Subjt:  MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSPAAPTPASSPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGS

Query:  VAVVLYAVVLMI
        VAVVLYAVVLMI
Subjt:  VAVVLYAVVLMI

XP_038877310.1 classical arabinogalactan protein 1 [Benincasa hispida]

1.2e-25

78.74

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Query:  MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSP-AAPTPAS----------SPSTSP----SPAASPSSISSPPADAPAP
        MAIRSFV MILVALLIGSAIAQSP ASP  SP KSPSKAPSASPSVKSPKSSP AAPTP+S          SP+TSP    SPA SPS ISSPPADAPAP
Subjt:  MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSP-AAPTPAS----------SPSTSP----SPAASPSSISSPPADAPAP

Query:  SGSGAASISFSVFGSVAVVLYAVVLMI
        SG+GAASISFSVFGSVAVVLY VVL+I
Subjt:  SGSGAASISFSVFGSVAVVLYAVVLMI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KZB8 Uncharacterized protein

5.3e-22

72.36

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Query:  MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSPA-APT----------PASSPSTSPSPAASPSSISSPPADAPAPSGSG
        MAI S V +I V+  I SA AQSPAASPSLSP KSPSKAPS +    SPKSSPA APT          P+SSPSTSPSPA+SP+SISSPPADAPAPSG+G
Subjt:  MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSPA-APT----------PASSPSTSPSPAASPSSISSPPADAPAPSGSG

Query:  AASISFSVFGSVAVVLYAVVLMI
        AASI+FSVFGSVAV LYAVVLMI
Subjt:  AASISFSVFGSVAVVLYAVVLMI

A0A6J1E9Q3 classical arabinogalactan protein 1-like

1.8e-38

100

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Query:  MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSPAAPTPASSPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGS
        MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSPAAPTPASSPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGS
Subjt:  MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSPAAPTPASSPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGS

Query:  VAVVLYAVVLMI
        VAVVLYAVVLMI
Subjt:  VAVVLYAVVLMI

A0A6J1FW49 classical arabinogalactan protein 1-like

2.3e-25

77.24

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Query:  MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSP-AAPTPAS----------SPSTSPSPAASPSSISSPPADAPAPSGSG
        MAIR FVVM+ VA+LI SAIAQSP+ASPSLSP KSPSKAPS SPSV+SPKSSP AAPTPAS          SPS SPSP  SPSSISSPPADAPAPSG+ 
Subjt:  MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSP-AAPTPAS----------SPSTSPSPAASPSSISSPPADAPAPSGSG

Query:  AASISFSVFGSVAVVLYAVVLMI
        AASISFS+FGSVA VLYA+VLMI
Subjt:  AASISFSVFGSVAVVLYAVVLMI

A0A6J1J6X2 classical arabinogalactan protein 1-like

2.0e-37

98.21

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Query:  MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSPAAPTPASSPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGS
        MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAP ASPSVKSPKSSPAAPTPASSPSTSPSPAASPSSISSPPADAPAPSG+GAASISFSVFGS
Subjt:  MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSPAAPTPASSPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGS

Query:  VAVVLYAVVLMI
        VAVVLYAVVLMI
Subjt:  VAVVLYAVVLMI

A0A6J1JSK4 classical arabinogalactan protein 1-like

1.4e-22

73.17

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Query:  MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSPAA---PT--------PASSPSTSPSPAASPSSISSPPADAPAPSGSG
        MA R FVVM+ VA+LI SAIAQSP+ASPSLSP KSPSKAPS SPSV+SPKSSPAA   PT        PA+SPS SPSP  SPSSISSPPADAPAPSG+ 
Subjt:  MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSPAA---PT--------PASSPSTSPSPAASPSSISSPPADAPAPSGSG

Query:  AASISFSVFGSVAVVLYAVVLMI
        AASIS S+FGSVA VL+A+V MI
Subjt:  AASISFSVFGSVAVVLYAVVLMI

SwissProt top hits

e value

%identity

Alignment

Q8LCN5 Classical arabinogalactan protein 1

6.0e-07

48.03

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Query:  RSFVVMILVALLIGSAIAQSPAASPS------LSPRKSPSK--APSASPSVKSPKSSPAAPTPASSPS----------TSPSPAASPSSISSPPADAPAP
        +S V ++L ALLI SA+AQSPA +PS      +SP  SP K  AP+ +P V    S  AA TP SS S          T+ SPA SPS+IS  P +AP P
Subjt:  RSFVVMILVALLIGSAIAQSPAASPS------LSPRKSPSK--APSASPSVKSPKSSPAAPTPASSPS----------TSPSPAASPSSISSPPADAPAP

Query:  SGSGAASISFSVFGSVAVVLYAVVLMI
        +  GA S  F+ FGSVAV+L A VL+I
Subjt:  SGSGAASISFSVFGSVAVVLYAVVLMI

Arabidopsis top hits

e value

%identity

Alignment

AT5G64310.1 arabinogalactan protein 1

4.3e-08

48.03

Show/hide

Query:  RSFVVMILVALLIGSAIAQSPAASPS------LSPRKSPSK--APSASPSVKSPKSSPAAPTPASSPS----------TSPSPAASPSSISSPPADAPAP
        +S V ++L ALLI SA+AQSPA +PS      +SP  SP K  AP+ +P V    S  AA TP SS S          T+ SPA SPS+IS  P +AP P
Subjt:  RSFVVMILVALLIGSAIAQSPAASPS------LSPRKSPSK--APSASPSVKSPKSSPAAPTPASSPS----------TSPSPAASPSSISSPPADAPAP

Query:  SGSGAASISFSVFGSVAVVLYAVVLMI
        +  GA S  F+ FGSVAV+L A VL+I
Subjt:  SGSGAASISFSVFGSVAVVLYAVVLMI

Sequences

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CDS sequence

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ATGGCGATTAGGAGTTTTGTGGTGATGATTTTGGTGGCATTGTTGATCGGCTCTGCAATCGCGCAATCGCCGGCGGCATCTCCGTCATTGTCTCCGAGGAAATCACCGTC
CAAGGCTCCGTCGGCGTCTCCGTCAGTGAAGTCGCCAAAATCCTCTCCGGCCGCGCCTACTCCGGCTTCTTCGCCATCTACTTCTCCGTCTCCGGCGGCTTCTCCTTCCT
CGATCTCCTCGCCGCCGGCTGACGCTCCCGCTCCGTCAGGTAGCGGCGCCGCTTCGATCTCTTTCTCGGTGTTCGGATCTGTGGCCGTTGTTCTATACGCCGTCGTTTTG
ATGATCTGA

mRNA sequence

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Protein sequence

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MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSPAAPTPASSPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGSVAVVLYAVVL
MI

CmoCh16G002610 (gene) of Cucurbita moschata (Rifu) v1 genome