CuGenDBv2

Gene ID	CmoCh16G003230
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Tubulin alpha chain
Genome location	Cmo_Chr16:1476243..1479201
RNA-Seq Expression	CmoCh16G003230
Synteny	CmoCh16G003230
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6576903.1 hypothetical protein SDJN03_24477, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-75

99.33

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Query:  EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVV
        EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVV
Subjt:  EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVV

Query:  TVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERMSQMAPRVN
        TVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDER+SQMAPRVN
Subjt:  TVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERMSQMAPRVN

KAG7014928.1 hypothetical protein SDJN02_22559, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.3e-75

99.33

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Query:  EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVV
        EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVV
Subjt:  EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVV

Query:  TVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERMSQMAPRVN
        TVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDER+SQMAPRVN
Subjt:  TVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERMSQMAPRVN

XP_022922737.1 uncharacterized protein LOC111430640 [Cucurbita moschata]

4.6e-76

100

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Query:  EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVV
        EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVV
Subjt:  EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVV

Query:  TVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERMSQMAPRVN
        TVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERMSQMAPRVN
Subjt:  TVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERMSQMAPRVN

XP_022984914.1 uncharacterized protein LOC111483048 [Cucurbita maxima]

1.3e-75

99.33

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Query:  EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVV
        EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVV
Subjt:  EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVV

Query:  TVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERMSQMAPRVN
        TVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDER+SQMAPRVN
Subjt:  TVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERMSQMAPRVN

XP_023552655.1 uncharacterized protein LOC111810239 [Cucurbita pepo subsp. pepo]

1.3e-75

99.33

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Query:  EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVV
        EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVV
Subjt:  EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVV

Query:  TVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERMSQMAPRVN
        TVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDER+SQMAPRVN
Subjt:  TVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERMSQMAPRVN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BY38 uncharacterized protein LOC103494832

2.9e-68

90.67

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Query:  EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVV
        EEPPESLFMKELKKRGITPTSLLEDT+N+DFGLGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI++
Subjt:  EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVV

Query:  TVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERMSQMAPRVN
        TVSFFF LYFF G SF+HDG KTPISPPPYVDPYALLEDER+SQ+AP VN
Subjt:  TVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERMSQMAPRVN

A0A5A7TME0 Tubulin alpha chain

2.5e-67

91.16

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Query:  EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVV
        EEPPESLFMKELKKRGITPTSLLEDT+N+DFGLGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI++
Subjt:  EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVV

Query:  TVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERMSQMAP
        TVSFFF LYFF G SF+HDG KTPISPPPYVDPYALLEDER+SQ+AP
Subjt:  TVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERMSQMAP

A0A5D3E071 Tubulin alpha chain

2.5e-67

91.16

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Query:  EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVV
        EEPPESLFMKELKKRGITPTSLLEDT+N+DFGLGGEM GENRDFSRRSAVSTEV+KSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLI++
Subjt:  EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVV

Query:  TVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERMSQMAP
        TVSFFF LYFF G SF+HDG KTPISPPPYVDPYALLEDER+SQ+AP
Subjt:  TVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERMSQMAP

A0A6J1E457 uncharacterized protein LOC111430640

2.2e-76

100

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Query:  EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVV
        EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVV
Subjt:  EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVV

Query:  TVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERMSQMAPRVN
        TVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERMSQMAPRVN
Subjt:  TVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERMSQMAPRVN

A0A6J1JBV1 uncharacterized protein LOC111483048

6.5e-76

99.33

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Query:  EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVV
        EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVV
Subjt:  EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVV

Query:  TVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERMSQMAPRVN
        TVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDER+SQMAPRVN
Subjt:  TVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERMSQMAPRVN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G50020.1 unknown protein

1.1e-48

65.56

Show/hide

Query:  EEPPESLFMKELKKRGITPTSLLEDTS-NTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV
        EEPPESLFMKELK+RG+TPTSLL+D   + D    G+  G +   S+ +A +   DKSL NQRERS+ LNSEGLEGLIPRA++LLTIGGTFFLGFWPLIV
Subjt:  EEPPESLFMKELKKRGITPTSLLEDTS-NTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIV

Query:  VTVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERMSQMAPRVN
        +T+  F ALY + G  F+HDG++TP+SPPPY+DPYALLEDER+S M PR+N
Subjt:  VTVSFFFALYFFLGPSFVHDGTKTPISPPPYVDPYALLEDERMSQMAPRVN

Sequences

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CDS sequence

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GAAGAACCTCCAGAATCATTGTTCATGAAGGAACTGAAGAAGAGAGGTATAACTCCTACTTCCTTGCTTGAGGATACTAGCAACACTGACTTTGGACTTGGTGGCGAGAT
GAAGGGAGAAAACAGAGATTTTTCCCGTAGAAGTGCTGTTTCAACTGAAGTTGACAAAAGCCTATCCAATCAAAGGGAGCGTTCCATGCAATTGAACAGTGAAGGCCTTG
AGGGGTTGATCCCTCGTGCTAAACTTTTGCTAACAATTGGAGGAACGTTCTTCTTAGGATTCTGGCCGTTGATCGTCGTCACTGTTTCGTTCTTTTTTGCTTTATACTTT
TTTCTTGGACCATCTTTTGTTCACGATGGCACCAAAACGCCAATATCACCTCCACCGTACGTTGATCCATATGCTCTTTTAGAAGACGAAAGAATGTCACAAATGGCTCC
TCGGGTAAATTGA

mRNA sequence

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Protein sequence

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EEPPESLFMKELKKRGITPTSLLEDTSNTDFGLGGEMKGENRDFSRRSAVSTEVDKSLSNQRERSMQLNSEGLEGLIPRAKLLLTIGGTFFLGFWPLIVVTVSFFFALYF
FLGPSFVHDGTKTPISPPPYVDPYALLEDERMSQMAPRVN

CmoCh16G003230 (gene) of Cucurbita moschata (Rifu) v1 genome