; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh16G003380 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G003380
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPectin lyase-like superfamily protein
Genome locationCmo_Chr16:1568035..1568767
RNA-Seq ExpressionCmoCh16G003380
SyntenyCmoCh16G003380
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0010951 - negative regulation of endopeptidase activity (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0004650 - polygalacturonase activity (molecular function)
GO:0004867 - serine-type endopeptidase inhibitor activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR006626 - Parallel beta-helix repeat
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576917.1 putative polygalacturonase, partial [Cucurbita argyrosperma subsp. sororia]1.1e-7092.31Show/hide
Query:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL
        LFFQNCT LRLRETKHINSVKNHISINACND +IS+VHIIAPENIPNTYGFN+SRSNNV+IQNSLIETGDECISLYNGS NINIVGVTCGP YGISIRSL
Subjt:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL

Query:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY
        GEDGGYNVIENINVSNCTLKGTQNGLRIKT++GGHGYVRNV+Y
Subjt:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY

KAG7014943.1 putative polygalacturonase, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-7193.01Show/hide
Query:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL
        LFFQNCT LRLRETKHINSVKNHISINACND +IS+VHIIAPENIPNTYGFN+SRSNNV+IQNSLIETGDECISLYNGS NINIVGVTCGPGYGISIRSL
Subjt:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL

Query:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY
        GEDGGYNVIENINVSNCTLKGTQNGLRIKT++GGHGYVRNV+Y
Subjt:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY

XP_022141107.1 probable polygalacturonase At3g15720 [Momordica charantia]8.5e-5272.03Show/hide
Query:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL
        LF  NC  L+LRE KHINS KNHISINACND IISD+HIIAPE+ PNT G +VSRSNNV+IQNS + TGD+CI+L NGS NI+IVGVTCGPG+GISI SL
Subjt:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL

Query:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY
        G +  YNV+ENI+V NC LKGTQNG+RIKT QGG+GY RN+ +
Subjt:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY

XP_022922566.1 probable polygalacturonase At3g15720 [Cucurbita moschata]9.7e-6497.69Show/hide
Query:  NCT--ELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGE
        NCT   LRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGE
Subjt:  NCT--ELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGE

Query:  DGGYNVIENINVSNCTLKGTQNGLRIKTSQ
        DGGYNVIENINVSNCTLKGTQNGLRIKTSQ
Subjt:  DGGYNVIENINVSNCTLKGTQNGLRIKTSQ

XP_023552846.1 probable polygalacturonase At3g15720 [Cucurbita pepo subsp. pepo]8.2e-7192.31Show/hide
Query:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL
        LFFQNCT L+LRETKHINSVKNHIS+NACND +IS+VHIIAPENIPNTYGFN+SRSNNV+IQNSLIETGDECISLYNGS NINIVGVTCGPGYGISIRSL
Subjt:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL

Query:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY
        GEDGGYNVIENINVSNCTLKGTQNGLRIKT++GGHGYVRNVIY
Subjt:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY

TrEMBL top hitse value%identityAlignment
A0A0A0KZ95 Uncharacterized protein1.3e-4560.14Show/hide
Query:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL
        LFF NC  L+++  KHINS KNHISIN C+D I S +HI APE+ PNT G ++S S N+ I++S + TGD+CI++ NGS NINI G+TCGPG+GISI SL
Subjt:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL

Query:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY
        G+DG YNV+EN++VSNC L+ TQNG+RIKT +GG+GY +N+ +
Subjt:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY

A0A6J1CIX8 probable polygalacturonase At3g157204.1e-5272.03Show/hide
Query:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL
        LF  NC  L+LRE KHINS KNHISINACND IISD+HIIAPE+ PNT G +VSRSNNV+IQNS + TGD+CI+L NGS NI+IVGVTCGPG+GISI SL
Subjt:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL

Query:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY
        G +  YNV+ENI+V NC LKGTQNG+RIKT QGG+GY RN+ +
Subjt:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY

A0A6J1CJJ6 probable polygalacturonase At3g157207.7e-5169.93Show/hide
Query:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL
        LF  NC  L+LRE KHINS +NHISINACNDAIISD+HI+APE+ PNT G ++S SNNV+IQNS + TGD+CI+L NGS NINIVGVTCGPG+GISI SL
Subjt:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL

Query:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY
        GE+G YNV+E+I+V NC LKGTQNG+RIKT Q G+GY R + +
Subjt:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY

A0A6J1DN64 probable polygalacturonase At3g157205.7e-4665.73Show/hide
Query:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL
        LFFQNC  L+LRE KH+NS KNHISIN+CN+AIISD+HIIAP+N PNT G +++ SNNV+IQNS IETG +CI+L NGS NI+IV VTCG G+GISI SL
Subjt:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL

Query:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY
         E+G +N+IENI+V NC  K T  G+ IKT QGG+GYVR++ +
Subjt:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY

A0A6J1E4H0 probable polygalacturonase At3g157204.7e-6497.69Show/hide
Query:  NCT--ELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGE
        NCT   LRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGE
Subjt:  NCT--ELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGE

Query:  DGGYNVIENINVSNCTLKGTQNGLRIKTSQ
        DGGYNVIENINVSNCTLKGTQNGLRIKTSQ
Subjt:  DGGYNVIENINVSNCTLKGTQNGLRIKTSQ

SwissProt top hitse value%identityAlignment
P48978 Polygalacturonase1.8e-2539.72Show/hide
Query:  FQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGE
        F  C  L ++     ++ + H+    C +   S + + APE+ PNT G +V+ + N+ I +S+I TGD+CIS+ +GS  +    +TCGPG+GISI SLGE
Subjt:  FQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGE

Query:  DGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY
        DG  + +  + V+   L GT NGLRIKT +GG G   N+++
Subjt:  DGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY

Q8RY29 Polygalacturonase ADPG23.4e-2741.96Show/hide
Query:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL
        L F N   L ++  K  N+ +  ISI  C++  +S+V + AP + PNT G +++ + N+ +  S+I TGD+CIS+ +GS N+ I  +TCGPG+GISI SL
Subjt:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL

Query:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY
        G+D     +  + V    L GT NG+RIKT QGG G   N+I+
Subjt:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY

Q94AJ5 Probable polygalacturonase At1g801701.7e-2640.56Show/hide
Query:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL
        L F  C  +R+     I+S + HI++ +C    IS + +IAP   PNT G ++S S  +VI N+ + TGD+CIS+   S  I+I  + CGPG+GISI SL
Subjt:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL

Query:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY
        G+   +  + +I V    +  T NG+RIKT QGG G V  +I+
Subjt:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY

Q9LW07 Probable polygalacturonase At3g157202.6e-3551.05Show/hide
Query:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL
        L F++C  LRL    H++S   HI I+ CN   IS + I APE+ PNT G +V  S+NVVIQ+ +I TGD+CI++ +G+ NI+I G+ CGPG+GISI SL
Subjt:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL

Query:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY
        G+DG    +EN+ V NC  +GT NG RIKT QGG GY R + +
Subjt:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY

Q9SFB7 Polygalacturonase QRT21.9e-3043.26Show/hide
Query:  FQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGE
        F  C  LR+   +  N+ + H++   C +    ++ + +P + PNT G +VS + N++IQ+S++ TGD+CIS+ +GS N+   G+TCGPG+GISI SLGE
Subjt:  FQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGE

Query:  DGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY
        D     + N+ V+  TL GT NG+RIKT QGGHG  +N+I+
Subjt:  DGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY

Arabidopsis top hitse value%identityAlignment
AT3G15720.1 Pectin lyase-like superfamily protein1.8e-3651.05Show/hide
Query:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL
        L F++C  LRL    H++S   HI I+ CN   IS + I APE+ PNT G +V  S+NVVIQ+ +I TGD+CI++ +G+ NI+I G+ CGPG+GISI SL
Subjt:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL

Query:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY
        G+DG    +EN+ V NC  +GT NG RIKT QGG GY R + +
Subjt:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY

AT3G15720.2 Pectin lyase-like superfamily protein2.4e-3651.06Show/hide
Query:  FQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGE
        F++C  LRL    H++S   HI I+ CN   IS + I APE+ PNT G +V  S+NVVIQ+ +I TGD+CI++ +G+ NI+I G+ CGPG+GISI SLG+
Subjt:  FQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGE

Query:  DGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY
        DG    +EN+ V NC  +GT NG RIKT QGG GY R + +
Subjt:  DGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY

AT4G32380.1 Pectin lyase-like superfamily protein2.2e-3749.65Show/hide
Query:  FQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGE
        F  C  +       INS +NHI+I   N+A +S++H+IAP + PNT G ++S S N+ I +S I+TGD+C+++   S+NIN+  VTCGPG+GISI SLGE
Subjt:  FQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGE

Query:  DGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY
         G   V++N+NV +CT  GTQNG RIKT  GG G+V+N++Y
Subjt:  DGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY

AT5G44830.1 Pectin lyase-like superfamily protein5.3e-3646.15Show/hide
Query:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL
        L FQ C +L++      NS +NHISI+ C    ++ + ++APE+ PNT G N+S S++V + ++ I TGD+C+++ NGS NINI  + CGPG+GIS+ SL
Subjt:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL

Query:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY
        G DG  +++EN+ V+NCT   T NG+RIKT   G GY RN+++
Subjt:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY

AT5G44840.1 Pectin lyase-like superfamily protein5.9e-3545.45Show/hide
Query:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL
        L FQ C +L +      NS KNHISI+ C    I+ + ++AP + PNT G N+S S++V I +++I TGD+C+++ +GS NINI  + CGPG+GIS+ S+
Subjt:  LFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSL

Query:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY
        G DG  +++EN+ V+NCT   T NG RIKT   G GY +N+++
Subjt:  GEDGGYNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTACCGACATTATTTTTTCAAAACTGCACTGAGCTCCGACTACGAGAAACTAAGCACATCAATAGTGTCAAAAATCATATCTCCATAAACGCTTGCAATGATGC
CATTATCTCAGACGTTCACATCATTGCTCCCGAAAACATCCCTAACACATACGGATTCAACGTTTCTAGATCAAACAATGTTGTTATTCAAAACTCCTTAATCGAAACAG
GTGACGAATGTATTTCTCTATACAATGGATCTTTTAATATCAATATCGTCGGTGTTACTTGTGGACCTGGTTACGGTATAAGCATTAGAAGCTTAGGAGAAGATGGAGGA
TATAACGTAATTGAAAACATCAATGTAAGCAATTGCACCTTAAAGGGCACTCAAAATGGATTGAGAATCAAGACTTCACAGGGTGGACATGGATATGTAAGAAACGTCAT
ATACATCTACCGTCCCGATTGTGACTTGCTTATCAAAATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTACCGACATTATTTTTTCAAAACTGCACTGAGCTCCGACTACGAGAAACTAAGCACATCAATAGTGTCAAAAATCATATCTCCATAAACGCTTGCAATGATGC
CATTATCTCAGACGTTCACATCATTGCTCCCGAAAACATCCCTAACACATACGGATTCAACGTTTCTAGATCAAACAATGTTGTTATTCAAAACTCCTTAATCGAAACAG
GTGACGAATGTATTTCTCTATACAATGGATCTTTTAATATCAATATCGTCGGTGTTACTTGTGGACCTGGTTACGGTATAAGCATTAGAAGCTTAGGAGAAGATGGAGGA
TATAACGTAATTGAAAACATCAATGTAAGCAATTGCACCTTAAAGGGCACTCAAAATGGATTGAGAATCAAGACTTCACAGGGTGGACATGGATATGTAAGAAACGTCAT
ATACATCTACCGTCCCGATTGTGACTTGCTTATCAAAATCTAA
Protein sequenceShow/hide protein sequence
MVLPTLFFQNCTELRLRETKHINSVKNHISINACNDAIISDVHIIAPENIPNTYGFNVSRSNNVVIQNSLIETGDECISLYNGSFNINIVGVTCGPGYGISIRSLGEDGG
YNVIENINVSNCTLKGTQNGLRIKTSQGGHGYVRNVIYIYRPDCDLLIKI