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CmoCh16G003390 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G003390
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTruncated PGN
Genome locationCmo_Chr16:1568833..1569576
RNA-Seq ExpressionCmoCh16G003390
SyntenyCmoCh16G003390
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0010951 - negative regulation of endopeptidase activity (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0004650 - polygalacturonase activity (molecular function)
GO:0004867 - serine-type endopeptidase inhibitor activity (molecular function)
InterPro domainsIPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7014864.1 putative polygalacturonase, partial [Cucurbita argyrosperma subsp. argyrosperma]3.6e-1152.38Show/hide
Query:  MKLLSASVFMFSSVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKVWKDVCGATIGIPTLRLVSISMGQVN
        MKL+  S F+F +VILS W V ASS FNVLDYGA GNG+TDD++          AF+K WKDVC AT  IPTL++ +  +  +N
Subjt:  MKLLSASVFMFSSVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKVWKDVCGATIGIPTLRLVSISMGQVN

KAG7014943.1 putative polygalacturonase, partial [Cucurbita argyrosperma subsp. argyrosperma]3.1e-1875Show/hide
Query:  MMKLLSASVFMFSSVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKVWKDVCGATIGIPTLRL
        MMKL SA VFMFS+VILS W VSAS DFNVLDYGAVGNGKTDDSQ          AFLK WKDVC ATIGIPTLR+
Subjt:  MMKLLSASVFMFSSVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKVWKDVCGATIGIPTLRL

KGN53196.1 hypothetical protein Csa_014667 [Cucumis sativus]4.6e-1462.67Show/hide
Query:  MKLLSASVFMFSSVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKVWKDVCGATIGIPTLRL
        MKLLSA++F++S  ILS W V  SSDFNVLDYGA+GNGKTDDS          KAFLK W DVCGAT   PTL +
Subjt:  MKLLSASVFMFSSVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKVWKDVCGATIGIPTLRL

XP_022922566.1 probable polygalacturonase At3g15720 [Cucurbita moschata]1.5e-1782.54Show/hide
Query:  SVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKVWKDVCGATIGIPTLRL
        SVILSLWNVSASSDFNVLDYGAVGNGKTDDSQ          AFLKVWKDVCGATIGIPTLR+
Subjt:  SVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKVWKDVCGATIGIPTLRL

XP_031739967.1 probable polygalacturonase At3g15720 [Cucumis sativus]4.6e-1462.67Show/hide
Query:  MKLLSASVFMFSSVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKVWKDVCGATIGIPTLRL
        MKLLSA++F++S  ILS W V  SSDFNVLDYGA+GNGKTDDS          KAFLK W DVCGAT   PTL +
Subjt:  MKLLSASVFMFSSVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKVWKDVCGATIGIPTLRL

TrEMBL top hitse value%identityAlignment
A0A0A0KZ95 Uncharacterized protein2.2e-1462.67Show/hide
Query:  MKLLSASVFMFSSVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKVWKDVCGATIGIPTLRL
        MKLLSA++F++S  ILS W V  SSDFNVLDYGA+GNGKTDDS          KAFLK W DVCGAT   PTL +
Subjt:  MKLLSASVFMFSSVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKVWKDVCGATIGIPTLRL

A0A1S3BYT5 probable polygalacturonase At3g157203.0e-1158.67Show/hide
Query:  MKLLSASVFMFSSVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKVWKDVCGATIGIPTLRL
        MKLL A++  +S  ILS   V +SSDFNVLDYGA+GNGKTDDS          KAFLK W DVCGAT   PTL +
Subjt:  MKLLSASVFMFSSVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKVWKDVCGATIGIPTLRL

A0A5D3CYS8 Putative polygalacturonase3.0e-1158.67Show/hide
Query:  MKLLSASVFMFSSVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKVWKDVCGATIGIPTLRL
        MKLL A++  +S  ILS   V +SSDFNVLDYGA+GNGKTDDS          KAFLK W DVCGAT   PTL +
Subjt:  MKLLSASVFMFSSVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKVWKDVCGATIGIPTLRL

A0A6J1CIX8 probable polygalacturonase At3g157202.3e-1160.27Show/hide
Query:  MKLLSASVFMFSSVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKVWKDVCGATIGIPTL
        MKL    +F+FS  ILS W VSAS  FNVLDYGA+GNG+ DDSQ          AFL+ W DVCGAT GIPTL
Subjt:  MKLLSASVFMFSSVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKVWKDVCGATIGIPTL

A0A6J1E4H0 probable polygalacturonase At3g157207.4e-1882.54Show/hide
Query:  SVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKVWKDVCGATIGIPTLRL
        SVILSLWNVSASSDFNVLDYGAVGNGKTDDSQ          AFLKVWKDVCGATIGIPTLR+
Subjt:  SVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKVWKDVCGATIGIPTLRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAAGCTACTTTCTGCTTCAGTTTTTATGTTTTCCAGTGTCATTTTAAGCTTGTGGAATGTATCAGCTTCATCTGATTTTAATGTTCTTGATTATGGAGCGGTTGG
AAATGGAAAAACGGATGATTCACAATCTTTCTCGATCTCTTTTTGTGGTGATAAGGCTTTTTTGAAAGTATGGAAAGACGTGTGTGGGGCAACGATAGGCATCCCAACAT
TGCGTCTGGTCTCAATATCAATGGGGCAGGTCAATTCGATGGCCAGAGTTCTTCTTGGTGGAAAGATTGTCATTCAAACTGCACACCTCCAACGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGAAGCTACTTTCTGCTTCAGTTTTTATGTTTTCCAGTGTCATTTTAAGCTTGTGGAATGTATCAGCTTCATCTGATTTTAATGTTCTTGATTATGGAGCGGTTGG
AAATGGAAAAACGGATGATTCACAATCTTTCTCGATCTCTTTTTGTGGTGATAAGGCTTTTTTGAAAGTATGGAAAGACGTGTGTGGGGCAACGATAGGCATCCCAACAT
TGCGTCTGGTCTCAATATCAATGGGGCAGGTCAATTCGATGGCCAGAGTTCTTCTTGGTGGAAAGATTGTCATTCAAACTGCACACCTCCAACGGTAA
Protein sequenceShow/hide protein sequence
MMKLLSASVFMFSSVILSLWNVSASSDFNVLDYGAVGNGKTDDSQSFSISFCGDKAFLKVWKDVCGATIGIPTLRLVSISMGQVNSMARVLLGGKIVIQTAHLQR