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CmoCh16G003450 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G003450
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description40S ribosomal protein S29
Genome locationCmo_Chr16:1599886..1601319
RNA-Seq ExpressionCmoCh16G003450
SyntenyCmoCh16G003450
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001209 - Ribosomal protein S14
IPR039744 - 40S ribosomal protein S29/30S ribosomal protein S14 type Z
IPR043140 - Ribosomal protein S14/S29


Homology Show/hide homology
GenBank top hitse value%identityAlignment
APR64012.1 hypothetical protein [Populus tomentosa]2.0e-2381.54Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASVSKYV
        MGHSN+WNSHPKSYGPGSRT     RVCGNPHG+IRKYGLMCCRQCFRSNAKEIGFIK    KY+
Subjt:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASVSKYV

KAF1880834.1 hypothetical protein Lal_00011894 [Lupinus albus]6.8e-2488.33Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTWY--SFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK+YGPGSRTWY  +  RVCGNPHGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTWY--SFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

KAG6784461.1 hypothetical protein POTOM_010157 [Populus tomentosa]2.0e-2381.54Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASVSKYV
        MGHSNVWNSHPK+YGPGSRT     RVCGNPHG+IRKYGLMCCRQCFRSNAKEIGFIK  V K++
Subjt:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASVSKYV

KAG7014949.1 40S ribosomal protein S29, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-2391.67Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
        MGHSNVWNSHPKSYGPGSRT     RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
Subjt:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS

KVI10829.1 Ribosomal protein S14, partial [Cynara cardunculus var. scolymus]2.0e-2385.48Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTWYSF--GRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
        MGHSNVWNSHPK+YGPGSRTW +F   RVCGN HGLIRKYGLMCCRQCF SNAKEIGFIK S
Subjt:  MGHSNVWNSHPKSYGPGSRTWYSF--GRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS

TrEMBL top hitse value%identityAlignment
A0A0A0KV31 Uncharacterized protein1.2e-2390Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
        MGHSNVWNSHPK+YGPGSRT     RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
Subjt:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS

A0A103YKL0 Ribosomal protein S14 (Fragment)9.5e-2485.48Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTWYSF--GRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
        MGHSNVWNSHPK+YGPGSRTW +F   RVCGN HGLIRKYGLMCCRQCF SNAKEIGFIK S
Subjt:  MGHSNVWNSHPKSYGPGSRTWYSF--GRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS

A0A1L6K5A9 Uncharacterized protein9.5e-2481.54Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASVSKYV
        MGHSN+WNSHPKSYGPGSRT     RVCGNPHG+IRKYGLMCCRQCFRSNAKEIGFIK    KY+
Subjt:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASVSKYV

A0A4D6N8J1 Small subunit ribosomal protein S29e1.2e-2388.52Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASV
        MGHSNVWNSHPK+YGPGSRT     RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK SV
Subjt:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASV

A0A6A5N100 Uncharacterized protein3.3e-2488.33Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTWY--SFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK+YGPGSRTWY  +  RVCGNPHGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTWY--SFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

SwissProt top hitse value%identityAlignment
Q4PM47 40S ribosomal protein S292.1e-1563.79Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGH N+W SHP+ YGPGSR    + RVC N HGLIRKYGL  CR+CFR  A +IGF K
Subjt:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q5I7K3 40S ribosomal protein S296.6e-2281.03Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK+YG GSR      RVCGN HGLIRKYGLMCCRQCFRS+AK+IGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q680P8 40S ribosomal protein S291.3e-2284.48Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK YGPGSR      RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q6F473 40S ribosomal protein S291.0e-1462.07Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGH+N+W SHP+ YG GSR+     R C N HGLIRKYGL  CRQCFR  A +IGF K
Subjt:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q7XYB0 40S ribosomal protein S297.0e-1662.07Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGH N+W SHP+ YG GSR+     ++CGN HGLIRKY +  CRQCFR  AK+IGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Arabidopsis top hitse value%identityAlignment
AT3G43980.1 Ribosomal protein S14p/S29e family protein9.4e-2484.48Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK YGPGSR      RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

AT3G44010.1 Ribosomal protein S14p/S29e family protein9.4e-2484.48Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK YGPGSR      RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

AT4G33865.1 Ribosomal protein S14p/S29e family protein9.4e-2484.48Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGHSNVWNSHPK YGPGSR      RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Subjt:  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCACTCCAACGTGTGGAACTCTCATCCGAAGAGCTATGGCCCTGGTTCTCGCACCTGGTATAGTTTCGGTCGTGTGTGCGGAAATCCCCATGGGTTGATC
AGAAAGTATGGACTTATGTGCTGCAGACAATGCTTCCGTAGCAATGCCAAGGAAATTGGGTTCATTAAGGCAAGTGTTTCTAAGTACGTTTGA
mRNA sequenceShow/hide mRNA sequence
CCGACTTCTTCTTCCCCGCAAAATTTCTGCTTCACATTGTGATTTCCGAAGCGTTTCAATACCTCACAATCATGGGGCACTCCAACGTGTGGAACTCTCATCCGA
AGAGCTATGGCCCTGGTTCTCGCACCTGGTATAGTTTCGGTCGTGTGTGCGGAAATCCCCATGGGTTGATCAGAAAGTATGGACTTATGTGCTGCAGACAATGCT
TCCGTAGCAATGCCAAGGAAATTGGGTTCATTAAGGCAAGTGTTTCTAAGTACGTTTGA
Protein sequenceShow/hide protein sequence
MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASVSKYV