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CmoCh16G004370 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G004370
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description50S ribosomal protein L33-like
Genome locationCmo_Chr16:2080975..2082376
RNA-Seq ExpressionCmoCh16G004370
SyntenyCmoCh16G004370
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009536 - plastid (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001705 - Ribosomal protein L33
IPR011332 - Zinc-binding ribosomal protein
IPR018264 - Ribosomal protein L33, conserved site
IPR038584 - Ribosomal protein L33 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577004.1 hypothetical protein SDJN03_24578, partial [Cucurbita argyrosperma subsp. sororia]1.3e-7396.2Show/hide
Query:  MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKK
        MAATIRR CLDSALSCGERNRFLC+SASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSI +GSVICMA+RYAPN TKRKRLSRKRGGDPEKK
Subjt:  MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKK

Query:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK
        KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK
Subjt:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK

KAG7015026.1 rpmG, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-7496.84Show/hide
Query:  MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKK
        MAATIRR CLDSALSCGERNRFLC+SASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIR+GSVICMA+RYAPN TKRKRLSRKRGGDPEKK
Subjt:  MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKK

Query:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK
        KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK
Subjt:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK

XP_022922689.1 uncharacterized protein LOC111430611 isoform X1 [Cucurbita moschata]2.0e-77100Show/hide
Query:  MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKK
        MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKK
Subjt:  MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKK

Query:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEV
        KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEV
Subjt:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEV

XP_022922690.1 uncharacterized protein LOC111430611 isoform X2 [Cucurbita moschata]5.2e-78100Show/hide
Query:  MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKK
        MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKK
Subjt:  MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKK

Query:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK
        KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK
Subjt:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK

XP_023552499.1 uncharacterized protein LOC111810144 [Cucurbita pepo subsp. pepo]1.2e-7496.84Show/hide
Query:  MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKK
        MAATIRR C DSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRHGSV CMA+RYAPN TKRKRLSRKRGGDPEKK
Subjt:  MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKK

Query:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK
        KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK
Subjt:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK

TrEMBL top hitse value%identityAlignment
A0A5A7UZ21 50S ribosomal protein L33-like3.9e-5575.62Show/hide
Query:  MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALS--LSVVPNVKESLSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPE
        MA TI+R CLD  LSCG+RN+FL +S+SS P +F++F   SF A LS  LS VPNVK  L Q A ERSIR+GSVICMA+RYAP+ TKRKRLSRKRGGDP 
Subjt:  MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALS--LSVVPNVKESLSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPE

Query:  KKKKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK
        KKKKTRRKGGRKDFKI+RLSSTA TGFFYAKKKSRKMADKIE+QK+DP+A RHVLFTEVK
Subjt:  KKKKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK

A0A6J1E445 uncharacterized protein LOC111430611 isoform X19.6e-78100Show/hide
Query:  MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKK
        MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKK
Subjt:  MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKK

Query:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEV
        KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEV
Subjt:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEV

A0A6J1E4T6 uncharacterized protein LOC111430611 isoform X22.5e-78100Show/hide
Query:  MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKK
        MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKK
Subjt:  MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKK

Query:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK
        KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK
Subjt:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK

A0A6J1J250 uncharacterized protein LOC111482725 isoform X22.4e-7395.57Show/hide
Query:  MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKK
        MAATIRR CL SAL CGERNRFLCDSASSTPPSFVSFKCLSFSAALSL VVPNVKESLSQSARERSIRHGSVICMARRYAPN TKRKRLSRKRGGDPEKK
Subjt:  MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKK

Query:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK
        +KTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTE K
Subjt:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK

A0A6J1J566 uncharacterized protein LOC111482725 isoform X12.4e-7395.57Show/hide
Query:  MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKK
        MAATIRR CL SAL CGERNRFLCDSASSTPPSFVSFKCLSFSAALSL VVPNVKESLSQSARERSIRHGSVICMARRYAPN TKRKRLSRKRGGDPEKK
Subjt:  MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKK

Query:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK
        +KTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTE K
Subjt:  KKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK

SwissProt top hitse value%identityAlignment
B6IN38 50S ribosomal protein L335.0e-0754.35Show/hide
Query:  IIRLSSTAGTGFFYAKKKS-RKMADKIELQKFDPLAKRHVLFTEVK
        +I+L S+A TGFFY KKK+ RK  +K+E +K+DP+A++HV+F E K
Subjt:  IIRLSSTAGTGFFYAKKKS-RKMADKIELQKFDPLAKRHVLFTEVK

Q0AQ67 50S ribosomal protein L338.5e-0757.78Show/hide
Query:  IRLSSTAGTGFFY-AKKKSRKMADKIELQKFDPLAKRHVLFTEVK
        IRL+STAGTG+FY  KK +R M +K+ L+K+DP+A++HV F E K
Subjt:  IRLSSTAGTGFFY-AKKKSRKMADKIELQKFDPLAKRHVLFTEVK

Q2W1A2 50S ribosomal protein L333.8e-0756.52Show/hide
Query:  IIRLSSTAGTGFFY-AKKKSRKMADKIELQKFDPLAKRHVLFTEVK
        +I+L STAGTGFFY AKK  RK  +K+E +K+DP+ ++HV F E K
Subjt:  IIRLSSTAGTGFFY-AKKKSRKMADKIELQKFDPLAKRHVLFTEVK

Q5FFJ4 50S ribosomal protein L332.2e-0750Show/hide
Query:  IIRLSSTAGTGFFYAKKKS-RKMADKIELQKFDPLAKRHVLFTEVK
        +++L+S+AGTG+FY KK++ +K+ +K+  +K+DP+A++HVLFTE K
Subjt:  IIRLSSTAGTGFFYAKKKS-RKMADKIELQKFDPLAKRHVLFTEVK

Q5HBV6 50S ribosomal protein L332.2e-0750Show/hide
Query:  IIRLSSTAGTGFFYAKKKS-RKMADKIELQKFDPLAKRHVLFTEVK
        +++L+S+AGTG+FY KK++ +K+ +K+  +K+DP+A++HVLFTE K
Subjt:  IIRLSSTAGTGFFYAKKKS-RKMADKIELQKFDPLAKRHVLFTEVK

Arabidopsis top hitse value%identityAlignment
AT3G06320.1 Ribosomal protein L33 family protein1.4e-0958.82Show/hide
Query:  RKDFKIIRLSSTAGTGFFYAKKKSRK-MADKIELQKFDPLAKRHVLFTEVK
        +K F  IRL S AGTGFFY K+KS K + +K+E +K+DP   RHVLFTE K
Subjt:  RKDFKIIRLSSTAGTGFFYAKKKSRK-MADKIELQKFDPLAKRHVLFTEVK

AT5G18790.1 Ribosomal protein L33 family protein1.4e-0958.82Show/hide
Query:  RKDFKIIRLSSTAGTGFFYAKKKSRK-MADKIELQKFDPLAKRHVLFTEVK
        +K F  IRL S AGTGFFY K+KS K + +K+E +K+DP   RHVLFTE K
Subjt:  RKDFKIIRLSSTAGTGFFYAKKKSRK-MADKIELQKFDPLAKRHVLFTEVK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCAACAATTCGAAGGCATTGTTTGGACTCGGCGCTTTCTTGTGGAGAAAGGAACCGATTTCTCTGTGATTCTGCGTCTTCAACTCCTCCAAGCTTCGTCTCTTT
CAAGTGTCTCTCCTTCTCTGCTGCTCTCTCGTTGAGCGTCGTTCCCAATGTCAAAGAATCGTTGTCACAGAGCGCTCGGGAGAGATCAATTCGTCATGGATCTGTAATTT
GCATGGCCAGAAGATATGCTCCTAACAATACGAAGAGAAAGAGGTTGAGTAGGAAGAGGGGTGGTGATCCAGAAAAGAAAAAGAAGACAAGGAGGAAAGGGGGAAGGAAA
GATTTCAAAATAATCCGACTCTCCTCAACTGCTGGGACTGGTTTTTTCTATGCCAAGAAAAAAAGCAGGAAGATGGCTGATAAGATTGAGCTCCAGAAATTTGACCCTCT
TGCAAAACGACATGTTCTGTTCACTGAAGTCAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGCAACAATTCGAAGGCATTGTTTGGACTCGGCGCTTTCTTGTGGAGAAAGGAACCGATTTCTCTGTGATTCTGCGTCTTCAACTCCTCCAAGCTTCGTCTCTTT
CAAGTGTCTCTCCTTCTCTGCTGCTCTCTCGTTGAGCGTCGTTCCCAATGTCAAAGAATCGTTGTCACAGAGCGCTCGGGAGAGATCAATTCGTCATGGATCTGTAATTT
GCATGGCCAGAAGATATGCTCCTAACAATACGAAGAGAAAGAGGTTGAGTAGGAAGAGGGGTGGTGATCCAGAAAAGAAAAAGAAGACAAGGAGGAAAGGGGGAAGGAAA
GATTTCAAAATAATCCGACTCTCCTCAACTGCTGGGACTGGTTTTTTCTATGCCAAGAAAAAAAGCAGGAAGATGGCTGATAAGATTGAGCTCCAGAAATTTGACCCTCT
TGCAAAACGACATGTTCTGTTCACTGAAGTCAAGTAA
Protein sequenceShow/hide protein sequence
MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKKKKTRRKGGRK
DFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK