CuGenDBv2

Gene ID	CmoCh16G004590
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X4
Genome location	Cmo_Chr16:2203176..2207831
RNA-Seq Expression	CmoCh16G004590
Synteny	CmoCh16G004590
Gene Ontology terms	GO:0035825 - homologous recombination (biological process) GO:0051321 - meiotic cell cycle (biological process)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6577026.1 E3 ubiquitin-protein ligase CCNB1IP1-like protein, partial [Cucurbita argyrosperma subsp. sororia]

1.1e-79

98.77

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Query:  MRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQAKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKQELQEKFAEKSRETTRKDWLVSAPETP
        MRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQ KFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDK ELQEKFAEKSRETTRKDWLVSAPETP
Subjt:  MRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQAKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKQELQEKFAEKSRETTRKDWLVSAPETP

Query:  GPREDIWPAKQAAPMAMEAGNRGAGAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT
        GPREDIWPAKQAAPMAMEAGNRGAGAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT
Subjt:  GPREDIWPAKQAAPMAMEAGNRGAGAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT

XP_004137226.1 E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Cucumis sativus]

2.5e-68

65.55

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Query:  LAGISPQILMRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQAKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKQELQEKFAEKS-------
        +AGISPQILM+SAYRSVMFY GQKELEMQYKMNR++AQCRQKCEV+Q KFTEKLEQVH+AYQKMAKRCQMMEREMENLSKDKQELQEKFAEKS       
Subjt:  LAGISPQILMRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQAKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKQELQEKFAEKS-------

Query:  ------------------------------------------RETTRKDWLVSAPETPGPREDIW------------------PAKQAAPMAMEAGNRGA
                                                  RE TRKDW+VSAPETPGPRE+IW                  PAKQAAPMAMEAGNR A
Subjt:  ------------------------------------------RETTRKDWLVSAPETPGPREDIW------------------PAKQAAPMAMEAGNRGA

Query:  GAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT
        GAH+A GSGAGNPSMTLRN ILSPIKRPQLSRRPQMFT
Subjt:  GAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT

XP_008451736.1 PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X4 [Cucumis melo]

9.3e-68

64.71

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Query:  LAGISPQILMRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQAKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKQELQEKFAEKS-------
        +AGISPQ LM+SAYRSVMFY+GQKELEMQYKMNR++AQCRQKCEV+Q KFTEKLEQVH+AYQKMAKRCQMMEREMENLSKDKQELQEKFAEKS       
Subjt:  LAGISPQILMRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQAKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKQELQEKFAEKS-------

Query:  ------------------------------------------RETTRKDWLVSAPETPGPREDIW------------------PAKQAAPMAMEAGNRGA
                                                  RE  RKDW+VSAPETPGPRE+IW                  PAKQAAPMAMEAGNR A
Subjt:  ------------------------------------------RETTRKDWLVSAPETPGPREDIW------------------PAKQAAPMAMEAGNRGA

Query:  GAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT
        GAH+A GSGAGNPSMTLRN ILSPIKRPQLSRRPQMFT
Subjt:  GAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT

XP_016901142.1 PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Cucumis melo]

9.3e-68

64.71

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Query:  LAGISPQILMRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQAKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKQELQEKFAEKS-------
        +AGISPQ LM+SAYRSVMFY+GQKELEMQYKMNR++AQCRQKCEV+Q KFTEKLEQVH+AYQKMAKRCQMMEREMENLSKDKQELQEKFAEKS       
Subjt:  LAGISPQILMRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQAKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKQELQEKFAEKS-------

Query:  ------------------------------------------RETTRKDWLVSAPETPGPREDIW------------------PAKQAAPMAMEAGNRGA
                                                  RE  RKDW+VSAPETPGPRE+IW                  PAKQAAPMAMEAGNR A
Subjt:  ------------------------------------------RETTRKDWLVSAPETPGPREDIW------------------PAKQAAPMAMEAGNRGA

Query:  GAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT
        GAH+A GSGAGNPSMTLRN ILSPIKRPQLSRRPQMFT
Subjt:  GAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT

XP_031740265.1 E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X2 [Cucumis sativus]

2.5e-68

65.55

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Query:  LAGISPQILMRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQAKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKQELQEKFAEKS-------
        +AGISPQILM+SAYRSVMFY GQKELEMQYKMNR++AQCRQKCEV+Q KFTEKLEQVH+AYQKMAKRCQMMEREMENLSKDKQELQEKFAEKS       
Subjt:  LAGISPQILMRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQAKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKQELQEKFAEKS-------

Query:  ------------------------------------------RETTRKDWLVSAPETPGPREDIW------------------PAKQAAPMAMEAGNRGA
                                                  RE TRKDW+VSAPETPGPRE+IW                  PAKQAAPMAMEAGNR A
Subjt:  ------------------------------------------RETTRKDWLVSAPETPGPREDIW------------------PAKQAAPMAMEAGNRGA

Query:  GAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT
        GAH+A GSGAGNPSMTLRN ILSPIKRPQLSRRPQMFT
Subjt:  GAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BSZ6 E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X3

4.5e-68

64.71

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Query:  LAGISPQILMRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQAKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKQELQEKFAEKS-------
        +AGISPQ LM+SAYRSVMFY+GQKELEMQYKMNR++AQCRQKCEV+Q KFTEKLEQVH+AYQKMAKRCQMMEREMENLSKDKQELQEKFAEKS       
Subjt:  LAGISPQILMRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQAKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKQELQEKFAEKS-------

Query:  ------------------------------------------RETTRKDWLVSAPETPGPREDIW------------------PAKQAAPMAMEAGNRGA
                                                  RE  RKDW+VSAPETPGPRE+IW                  PAKQAAPMAMEAGNR A
Subjt:  ------------------------------------------RETTRKDWLVSAPETPGPREDIW------------------PAKQAAPMAMEAGNRGA

Query:  GAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT
        GAH+A GSGAGNPSMTLRN ILSPIKRPQLSRRPQMFT
Subjt:  GAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT

A0A1S3BTB4 E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X4

4.5e-68

64.71

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Query:  LAGISPQILMRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQAKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKQELQEKFAEKS-------
        +AGISPQ LM+SAYRSVMFY+GQKELEMQYKMNR++AQCRQKCEV+Q KFTEKLEQVH+AYQKMAKRCQMMEREMENLSKDKQELQEKFAEKS       
Subjt:  LAGISPQILMRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQAKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKQELQEKFAEKS-------

Query:  ------------------------------------------RETTRKDWLVSAPETPGPREDIW------------------PAKQAAPMAMEAGNRGA
                                                  RE  RKDW+VSAPETPGPRE+IW                  PAKQAAPMAMEAGNR A
Subjt:  ------------------------------------------RETTRKDWLVSAPETPGPREDIW------------------PAKQAAPMAMEAGNRGA

Query:  GAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT
        GAH+A GSGAGNPSMTLRN ILSPIKRPQLSRRPQMFT
Subjt:  GAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT

A0A1S4DYU3 E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1

4.5e-68

64.71

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Query:  LAGISPQILMRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQAKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKQELQEKFAEKS-------
        +AGISPQ LM+SAYRSVMFY+GQKELEMQYKMNR++AQCRQKCEV+Q KFTEKLEQVH+AYQKMAKRCQMMEREMENLSKDKQELQEKFAEKS       
Subjt:  LAGISPQILMRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQAKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKQELQEKFAEKS-------

Query:  ------------------------------------------RETTRKDWLVSAPETPGPREDIW------------------PAKQAAPMAMEAGNRGA
                                                  RE  RKDW+VSAPETPGPRE+IW                  PAKQAAPMAMEAGNR A
Subjt:  ------------------------------------------RETTRKDWLVSAPETPGPREDIW------------------PAKQAAPMAMEAGNRGA

Query:  GAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT
        GAH+A GSGAGNPSMTLRN ILSPIKRPQLSRRPQMFT
Subjt:  GAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT

A0A5A7VBK3 E3 ubiquitin-protein ligase CCNB1IP1-like protein isoform X4

1.0e-67

64.29

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Query:  LAGISPQILMRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQAKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKQELQEKFAEKS-------
        +AGISPQ LM+SAYRSVMFY+GQKELEMQYKMNR++AQCRQKCEV+Q KFTEKLEQVH+AYQKMAKRCQMMER+MENLSKDKQELQEKFAEKS       
Subjt:  LAGISPQILMRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQAKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKQELQEKFAEKS-------

Query:  ------------------------------------------RETTRKDWLVSAPETPGPREDIW------------------PAKQAAPMAMEAGNRGA
                                                  RE  RKDW+VSAPETPGPRE+IW                  PAKQAAPMAMEAGNR A
Subjt:  ------------------------------------------RETTRKDWLVSAPETPGPREDIW------------------PAKQAAPMAMEAGNRGA

Query:  GAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT
        GAH+A GSGAGNPSMTLRN ILSPIKRPQLSRRPQMFT
Subjt:  GAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT

A0A6J1CND8 E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1

2.9e-67

64.85

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Query:  LAGISPQILMRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQAKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKQELQEKFAEK--------
        +AGISPQILM+SAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEV+Q KFTEKLEQVH AYQKMAKRCQMMEREMENL+KDKQELQEKFAEK        
Subjt:  LAGISPQILMRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQAKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKQELQEKFAEK--------

Query:  -----------------------------------------SRETTRKDWLVSAPETPGPREDIWPA-------------------KQAAPMAMEAGNRG
                                                 SRE  RKDWLVSAPETPGPRE+IWPA                   KQA PMAMEAGNR 
Subjt:  -----------------------------------------SRETTRKDWLVSAPETPGPREDIWPA-------------------KQAAPMAMEAGNRG

Query:  AGAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT
        AGAH+A G+GA NPSMTLRN ILSPIKRPQLSRRPQMFT
Subjt:  AGAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT

SwissProt top hits

e value

%identity

Alignment

F4HRI2 E3 ubiquitin-protein ligase CCNB1IP1 homolog

4.5e-49

51.68

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Query:  LAGISPQILMRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQAKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKQELQEKFAEKS-------
        +AGISPQILM+SAYRSVMFYI Q++LEMQYKMNR+VAQCRQKCE +QAKF+EK+EQVH AYQKM KRCQMME+E+ENL+KDKQELQEKF+EKS       
Subjt:  LAGISPQILMRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQAKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKQELQEKFAEKS-------

Query:  --------------------------------------------RETTRKDWLVSAPETPGPREDIWPAKQ-------------AAPMAMEAGNRGAG-A
                                                    RET RKD    +P TPGP+++IWPA+Q             +  +  + GNR AG  
Subjt:  --------------------------------------------RETTRKDWLVSAPETPGPREDIWPAKQ-------------AAPMAMEAGNRGAG-A

Query:  HSA-SGSGAGNPSMTLRNFILSPIKRPQLSR-RPQMFT
        H    G G  NP  TLRN ILSPIKR QLSR RPQ+FT
Subjt:  HSA-SGSGAGNPSMTLRNFILSPIKRPQLSR-RPQMFT

I6PL68 E3 ubiquitin-protein ligase CCNB1IP1 homolog

1.8e-45

49.38

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Query:  LAGISPQILMRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQAKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKQELQEKFAEKSRETTRKD
        +AG+SPQILM+SAYRSVMFYIGQKELEMQYKMNRIV QCRQKCE++QAKFTEKLE+VH AYQKMAK+CQ+ME+E+ENLS+DKQELQEKFAEKSR+  + D
Subjt:  LAGISPQILMRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQAKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKQELQEKFAEKSRETTRKD

Query:  ------------------------------------------------WLVSAPETPGPREDIW--PAKQ----AAPMAMEAGNRGAGAHSAS-------
                                                         L   PETPG R++ W  P +Q    + P  + A   G+ AH+A+       
Subjt:  ------------------------------------------------WLVSAPETPGPREDIW--PAKQ----AAPMAMEAGNRGAGAHSAS-------

Query:  --------GSGAGNPSMTLRNFILSPIKRPQLSR-RPQMFT
                G+   N S  LRN I+SP+KRPQLSR RP MFT
Subjt:  --------GSGAGNPSMTLRNFILSPIKRPQLSR-RPQMFT

Arabidopsis top hits

e value

%identity

Alignment

AT1G53490.1 RING/U-box superfamily protein

3.2e-50

51.68

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Query:  LAGISPQILMRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQAKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKQELQEKFAEKS-------
        +AGISPQILM+SAYRSVMFYI Q++LEMQYKMNR+VAQCRQKCE +QAKF+EK+EQVH AYQKM KRCQMME+E+ENL+KDKQELQEKF+EKS       
Subjt:  LAGISPQILMRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQAKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKQELQEKFAEKS-------

Query:  --------------------------------------------RETTRKDWLVSAPETPGPREDIWPAKQ-------------AAPMAMEAGNRGAG-A
                                                    RET RKD    +P TPGP+++IWPA+Q             +  +  + GNR AG  
Subjt:  --------------------------------------------RETTRKDWLVSAPETPGPREDIWPAKQ-------------AAPMAMEAGNRGAG-A

Query:  HSA-SGSGAGNPSMTLRNFILSPIKRPQLSR-RPQMFT
        H    G G  NP  TLRN ILSPIKR QLSR RPQ+FT
Subjt:  HSA-SGSGAGNPSMTLRNFILSPIKRPQLSR-RPQMFT

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAATGGGTCAATATGGTTGGCCGGTATATCTCCTCAGATATTGATGAGAAGTGCATATAGAAGTGTAATGTTTTATATTGGACAAAAGGAACTGGAGATGCAGTACAA
GATGAACAGAATCGTGGCTCAATGCCGACAGAAATGTGAGGTTATACAAGCAAAGTTCACCGAGAAACTGGAGCAGGTGCATGCTGCATACCAAAAAATGGCCAAAAGAT
GCCAGATGATGGAGCGAGAAATGGAGAATTTATCCAAAGACAAACAAGAGCTACAGGAGAAGTTTGCTGAAAAATCCAGAGAAACCACGAGGAAAGACTGGCTGGTTTCC
GCTCCTGAAACTCCAGGGCCAAGAGAGGACATATGGCCGGCAAAACAAGCTGCTCCAATGGCAATGGAAGCTGGGAACAGAGGAGCTGGAGCTCACTCCGCGTCTGGAAG
TGGAGCTGGCAACCCCTCCATGACTCTACGCAACTTCATTTTGTCCCCAATCAAACGACCTCAGCTCTCTCGTCGCCCTCAAATGTTCACGTAA

mRNA sequence

Show/hide mRNA sequence

ATTTGTTTCCGAGGATTTCGAGGGTCTACGATTTCCTTAGCATTCCATGGAATTAGAGGTTACTTCTGAAGGTTCATTATGAAATGCAATGCTTGCTGGAGGGAACTTGA
AGGGCGAGCTATCTCCACAACTTGTGGTCACCTGTTGTGCACAGAAGATGCAAGCAAGATCCTTAGCAATGATGGAGCATGCCCCATTCGTGATCGAGTTCTTTCTAAAA
GGTGAAGGCTTTGTTATTATGAAGTTACGTACGTTTTCTGTTTGGCAGCCTCATGAAACCTGTGGATATCAATCCAAACGATGAATGGGTCAATATGGTTGGCCGGTATA
TCTCCTCAGATATTGATGAGAAGTGCATATAGAAGTGTAATGTTTTATATTGGACAAAAGGAACTGGAGATGCAGTACAAGATGAACAGAATCGTGGCTCAATGCCGACA
GAAATGTGAGGTTATACAAGCAAAGTTCACCGAGAAACTGGAGCAGGTGCATGCTGCATACCAAAAAATGGCCAAAAGATGCCAGATGATGGAGCGAGAAATGGAGAATT
TATCCAAAGACAAACAAGAGCTACAGGAGAAGTTTGCTGAAAAATCCAGAGAAACCACGAGGAAAGACTGGCTGGTTTCCGCTCCTGAAACTCCAGGGCCAAGAGAGGAC
ATATGGCCGGCAAAACAAGCTGCTCCAATGGCAATGGAAGCTGGGAACAGAGGAGCTGGAGCTCACTCCGCGTCTGGAAGTGGAGCTGGCAACCCCTCCATGACTCTACG
CAACTTCATTTTGTCCCCAATCAAACGACCTCAGCTCTCTCGTCGCCCTCAAATGTTCACGTAA

Protein sequence

Show/hide protein sequence

MNGSIWLAGISPQILMRSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVIQAKFTEKLEQVHAAYQKMAKRCQMMEREMENLSKDKQELQEKFAEKSRETTRKDWLVS
APETPGPREDIWPAKQAAPMAMEAGNRGAGAHSASGSGAGNPSMTLRNFILSPIKRPQLSRRPQMFT

CmoCh16G004590 (gene) of Cucurbita moschata (Rifu) v1 genome