; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh16G005090 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G005090
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPhotosystem II 10 kDa polypeptide, chloroplastic
Genome locationCmo_Chr16:2458385..2460452
RNA-Seq ExpressionCmoCh16G005090
SyntenyCmoCh16G005090
Gene Ontology termsGO:0010270 - photosystem II oxygen evolving complex assembly (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009654 - photosystem II oxygen evolving complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR006814 - Photosystem II PsbR


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008451826.1 PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis melo]7.9e-6085.33Show/hide
Query:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDG
        MAASVMTSVSLKPAPFTVEK+ARG+PSLAR S  FKV ASGGKKIKTDKPY            GINGSMNLRDGVDASGRK KGKGVYQ+VDKYGANVDG
Subjt:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDG

Query:  YSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        YSPIYDTKDWSP+GDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSAL Q
Subjt:  YSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
XP_022136536.1 photosystem II 10 kDa polypeptide, chloroplastic [Momordica charantia]4.2e-6186Show/hide
Query:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDG
        MAASVMTSVSLKPAPFTVEK+A+G+PSLAR S  FKVEASGGKKIKTDKPY            GINGSMNLRDG+DASGRKGKGKGVYQ+VDKYGANVDG
Subjt:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDG

Query:  YSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        YSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSAL Q
Subjt:  YSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
XP_022931545.1 photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita moschata]1.3e-6592Show/hide
Query:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDG
        MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPY            GINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDG
Subjt:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDG

Query:  YSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        YSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
Subjt:  YSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
XP_023553544.1 photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita pepo subsp. pepo]3.7e-6591.33Show/hide
Query:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDG
        MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPY            GINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDG
Subjt:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDG

Query:  YSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        YSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSAL Q
Subjt:  YSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
XP_038876356.1 photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida]1.2e-6086Show/hide
Query:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDG
        MAASVMTSVSLKPAPFTVEK+A+G+PSLAR S  FKVEASGGKKIKTDKPY            GINGSMNLRDG+DASGRKGKGKGVYQ+VDKYGANVDG
Subjt:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDG

Query:  YSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        YSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSAL Q
Subjt:  YSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
TrEMBL top hitse value%identityAlignment
A0A1S3BSD1 Photosystem II 10 kDa polypeptide, chloroplastic3.8e-6085.33Show/hide
Query:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDG
        MAASVMTSVSLKPAPFTVEK+ARG+PSLAR S  FKV ASGGKKIKTDKPY            GINGSMNLRDGVDASGRK KGKGVYQ+VDKYGANVDG
Subjt:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDG

Query:  YSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        YSPIYDTKDWSP+GDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSAL Q
Subjt:  YSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
A0A5D3CXX1 Photosystem II 10 kDa polypeptide, chloroplastic3.8e-6085.33Show/hide
Query:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDG
        MAASVMTSVSLKPAPFTVEK+ARG+PSLAR S  FKV ASGGKKIKTDKPY            GINGSMNLRDGVDASGRK KGKGVYQ+VDKYGANVDG
Subjt:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDG

Query:  YSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        YSPIYDTKDWSP+GDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSAL Q
Subjt:  YSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
A0A6J1C3S3 Photosystem II 10 kDa polypeptide, chloroplastic2.0e-6186Show/hide
Query:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDG
        MAASVMTSVSLKPAPFTVEK+A+G+PSLAR S  FKVEASGGKKIKTDKPY            GINGSMNLRDG+DASGRKGKGKGVYQ+VDKYGANVDG
Subjt:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDG

Query:  YSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        YSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSAL Q
Subjt:  YSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
A0A6J1EZP8 Photosystem II 10 kDa polypeptide, chloroplastic6.1e-6692Show/hide
Query:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDG
        MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPY            GINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDG
Subjt:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDG

Query:  YSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        YSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
Subjt:  YSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
A0A6J1JDA0 Photosystem II 10 kDa polypeptide, chloroplastic6.1e-6692Show/hide
Query:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDG
        MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPY            GINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDG
Subjt:  MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDG

Query:  YSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        YSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
Subjt:  YSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
SwissProt top hitse value%identityAlignment
P06183 Photosystem II 10 kDa polypeptide, chloroplastic1.3e-5275.5Show/hide
Query:  MAASVMTSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVD
        MA++VM+S+SLKP  FT+EK + +G+PSLAR S  FKV ASG KK+KTDKPY            GINGSM LRDGVDASGRK KGKGVYQYVDKYGANVD
Subjt:  MAASVMTSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVD

Query:  GYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        GYSPIY+T +WSPSGDVYVGGTTGLAIWAVTL G+LAGGALLVYNTSALAQ
Subjt:  GYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
P27202 Photosystem II 10 kDa polypeptide, chloroplastic5.4e-5175Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANV
        MAASVM +SV+LKPA FTVEK AARG+PSL R    FK+ ASG KKIKTDKP+            GINGSM+LRDGVDASGRKGKG GVY+YVDKYGANV
Subjt:  MAASVM-TSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANV

Query:  DGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        DGYSPIY+  +WS SGDVY GG TGLAIWAVTLAG+LAGGALLVYNTSALAQ
Subjt:  DGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
P49108 Photosystem II 10 kDa polypeptide, chloroplastic5.0e-4972.55Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-AARGIPSLARKS-GFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGAN
        MAASVM +SV+LKPA FTVEK +ARG+PSL R S   F++ ASG KKIKTDKP+            G+NGSM+LRDGVDASGRKGKG GVY++VDKYGAN
Subjt:  MAASVM-TSVSLKPAPFTVEK-AARGIPSLARKS-GFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGAN

Query:  VDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        VDGYSPIY+  +WS SGDVY GG TGLAIWAVTLAG+LAGGALLVYNTSALAQ
Subjt:  VDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
Q40163 Photosystem II 10 kDa polypeptide, chloroplastic4.8e-5274.83Show/hide
Query:  MAASVMTSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVD
        MA++VM+S+SLKP  FT+EK + +G+PSL R S  FKV ASG KK+KTDKPY            GINGSM LRDGVDASGRK KGKGVYQYVDKYGANVD
Subjt:  MAASVMTSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVD

Query:  GYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        GYSPIY+T +WSPSGDVYVGGTTGLAIWAVTL G+LAGGALLVYNTSALAQ
Subjt:  GYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
Q40519 Photosystem II 10 kDa polypeptide, chloroplastic2.6e-5375.5Show/hide
Query:  MAASVMTSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVD
        MA++VM   SLKPAPF+VEK A +G+PSLAR S  F+V+ASG KK+KTDKPY            GINGSM+LRDGVDASGRK KGKGVYQ+VDKYGANVD
Subjt:  MAASVMTSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVD

Query:  GYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        GYSPIY+T DWSPSGDVYVGGTTGLAIWAVTL G+LAGGALLV+NTSALAQ
Subjt:  GYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
Arabidopsis top hitse value%identityAlignment
AT1G79040.1 photosystem II subunit R3.8e-5275Show/hide
Query:  MAASVM-TSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANV
        MAASVM +SV+LKPA FTVEK AARG+PSL R    FK+ ASG KKIKTDKP+            GINGSM+LRDGVDASGRKGKG GVY+YVDKYGANV
Subjt:  MAASVM-TSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANV

Query:  DGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ
        DGYSPIY+  +WS SGDVY GG TGLAIWAVTLAG+LAGGALLVYNTSALAQ
Subjt:  DGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCCTCGGTGATGACCTCAGTGAGTCTCAAACCAGCTCCTTTCACCGTCGAGAAAGCGGCGAGAGGTATTCCGTCTCTGGCGAGAAAATCCGGCTTCTTCAAGGT
CGAGGCCAGTGGTGGGAAGAAGATTAAGACCGACAAACCCTATGACGATTCTGACTCGTTTTTCGATGTAATGCGTGTAGGAATCAATGGATCGATGAATTTGAGGGATG
GAGTTGATGCATCGGGAAGGAAGGGCAAGGGAAAGGGAGTCTACCAGTACGTCGACAAGTACGGAGCCAATGTCGATGGCTACAGTCCCATCTACGACACCAAAGACTGG
TCTCCAAGTGGTGATGTCTATGTCGGTGGTACAACTGGGTTAGCCATTTGGGCAGTGACCTTGGCCGGTCTTCTTGCTGGAGGTGCTCTTCTTGTGTACAACACCAGTGC
TTTGGCGCAGTAA
mRNA sequenceShow/hide mRNA sequence
AGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTTATCGATTGGAAATGGCGGCCTCGGTGATGACCTCAGTGAGTCTCAAACCAGCTCCTTTCACCGTCGAGA
AAGCGGCGAGAGGTATTCCGTCTCTGGCGAGAAAATCCGGCTTCTTCAAGGTCGAGGCCAGTGGTGGGAAGAAGATTAAGACCGACAAACCCTATGACGATTCTGACTCG
TTTTTCGATGTAATGCGTGTAGGAATCAATGGATCGATGAATTTGAGGGATGGAGTTGATGCATCGGGAAGGAAGGGCAAGGGAAAGGGAGTCTACCAGTACGTCGACAA
GTACGGAGCCAATGTCGATGGCTACAGTCCCATCTACGACACCAAAGACTGGTCTCCAAGTGGTGATGTCTATGTCGGTGGTACAACTGGGTTAGCCATTTGGGCAGTGA
CCTTGGCCGGTCTTCTTGCTGGAGGTGCTCTTCTTGTGTACAACACCAGTGCTTTGGCGCAGTAAGCTGGAGGGAAGTTAAAAGTCTGTTCTTTTCACTTTAGTTTTTGT
AGCATATTATTATGAACTACATTATTAAGAAATTCTATGTAATTATCTGGACAATTGCATCGTAAATGCTTGGTAAGATAAATTCTTCTCTTCCCTATATTTTTTTCTTA
TTGTTCTTTCTTTTATCATTTCTTGACCGAGTAAGTCGGGATGACTTTTGAAAATAGTACTTTTTGTTCCAATAAGAAAAAAAAGGTGTC
Protein sequenceShow/hide protein sequence
MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYDDSDSFFDVMRVGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDW
SPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ