; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh16G005260 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G005260
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description60S ribosomal protein L27
Genome locationCmo_Chr16:2545681..2546088
RNA-Seq ExpressionCmoCh16G005260
SyntenyCmoCh16G005260
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001141 - Ribosomal protein L27e
IPR008991 - Translation protein SH3-like domain superfamily
IPR018262 - Ribosomal protein L27e, conserved site
IPR038655 - Ribosomal protein L27e superfamily
IPR041991 - Eukaryotic Ribosomal Protein L27, KOW domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147740.1 60S ribosomal protein L27 [Cucumis sativus]9.6e-6597.04Show/hide
Query:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLK NKAVI+LQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS+KKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+DSL
Subjt:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

XP_022931548.1 60S ribosomal protein L27-2-like [Cucurbita moschata]6.7e-6699.26Show/hide
Query:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVI+LQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
Subjt:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

XP_022931553.1 60S ribosomal protein L27-2-like [Cucurbita moschata]5.1e-66100Show/hide
Query:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
Subjt:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

XP_022942297.1 60S ribosomal protein L27-2 [Cucurbita moschata]3.3e-6597.04Show/hide
Query:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVI+LQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAG+KKYP+KVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+DSL
Subjt:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

XP_022985069.1 60S ribosomal protein L27-2-like [Cucurbita maxima]8.7e-6699.26Show/hide
Query:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIK+VNYRHLMPTRYTLDVDLKDVVTIDSL
Subjt:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

TrEMBL top hitse value%identityAlignment
A0A6J1EZ01 60S ribosomal protein L273.2e-6699.26Show/hide
Query:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVI+LQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
Subjt:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

A0A6J1EZ07 60S ribosomal protein L272.5e-66100Show/hide
Query:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
Subjt:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

A0A6J1FPU8 60S ribosomal protein L271.6e-6597.04Show/hide
Query:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVI+LQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAG+KKYP+KVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+DSL
Subjt:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

A0A6J1JA75 60S ribosomal protein L273.2e-6699.26Show/hide
Query:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVI+LQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
Subjt:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

A0A6J1JC92 60S ribosomal protein L274.2e-6699.26Show/hide
Query:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIK+VNYRHLMPTRYTLDVDLKDVVTIDSL
Subjt:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

SwissProt top hitse value%identityAlignment
P41101 60S ribosomal protein L274.4e-5277.7Show/hide
Query:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDL----KDVVT
        M KFLK NKAVI+LQG+YAGRKAVI+RAFD+GTRDR YGHCLVAGI +YP KVIRKDS+KK  KKSRVKAFIKLVNY H+MPTRYTLD DL    KDVV 
Subjt:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDL----KDVVT

Query:  IDSLQSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
         D LQ++DKKVT A+ TK R  ERFKTGKNRWFFTKLRF
Subjt:  IDSLQSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

P51419 60S ribosomal protein L27-31.3e-5984.44Show/hide
Query:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDS+KKTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+L
Subjt:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKV A KE K + EERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

Q05462 60S ribosomal protein L271.1e-5883.7Show/hide
Query:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLK NKAVI+LQGRYAG+KAVI++ FDDGTR++ YGHCLVAGIKK+P+KVI+KDS+KKTAKKSRVKAF+KLVNY+HLMPTRYTLDVDLKD V  D L
Subjt:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKVTA KETKK  EERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

Q8LCL3 60S ribosomal protein L27-21.3e-5984.44Show/hide
Query:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVI+LQGRYAG+KAVII++FDDGT DR YGHCLVAG+KKYP+KVIRKDS+KKTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+L
Subjt:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        +SKDKKVTA KE K + EERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

Q9SKX8 60S ribosomal protein L27-11.0e-5374.81Show/hide
Query:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVK +K  KAVI+LQGRY G+KAVI+++FDDGT ++ YGHCLVAG+KKYP+KVIRKDS+KKTAKKSRVK F K++NY+H+MPTRYTLD+DLK+VV+ D++
Subjt:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
         SKDKKVTA KE K +FEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

Arabidopsis top hitse value%identityAlignment
AT2G32220.1 Ribosomal L27e protein family7.4e-5574.81Show/hide
Query:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVK +K  KAVI+LQGRY G+KAVI+++FDDGT ++ YGHCLVAG+KKYP+KVIRKDS+KKTAKKSRVK F K++NY+H+MPTRYTLD+DLK+VV+ D++
Subjt:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
         SKDKKVTA KE K +FEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

AT3G22230.1 Ribosomal L27e protein family9.0e-6184.44Show/hide
Query:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVI+LQGRYAG+KAVII++FDDGT DR YGHCLVAG+KKYP+KVIRKDS+KKTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+L
Subjt:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        +SKDKKVTA KE K + EERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

AT4G15000.1 Ribosomal L27e protein family9.0e-6184.44Show/hide
Query:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDS+KKTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+L
Subjt:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKV A KE K + EERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

AT4G15000.2 Ribosomal L27e protein family4.0e-5382.93Show/hide
Query:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDS+KKTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+L
Subjt:  MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKT
        QSKDKKV A KE K + EERFKT
Subjt:  QSKDKKVTAAKETKKRFEERFKT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAGTTCCTCAAGCAGAACAAAGCCGTGATCATCCTTCAAGGCCGTTACGCCGGCCGGAAGGCGGTCATTATTCGTGCGTTCGATGACGGAACGCGTGATAGGGC
TTATGGCCACTGCTTGGTTGCCGGGATAAAAAAGTATCCGGCGAAAGTCATCCGAAAGGACTCCTCCAAGAAGACTGCTAAGAAATCCCGTGTCAAGGCCTTTATCAAGC
TCGTCAATTATAGGCACCTGATGCCTACCAGGTATACTCTCGATGTCGATCTTAAAGACGTTGTCACTATCGATTCATTGCAATCCAAGGACAAGAAGGTCACTGCTGCT
AAGGAGACCAAGAAGAGGTTTGAGGAAAGGTTCAAAACCGGGAAGAACAGGTGGTTTTTCACTAAACTCAGGTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGAAGTTCCTCAAGCAGAACAAAGCCGTGATCATCCTTCAAGGCCGTTACGCCGGCCGGAAGGCGGTCATTATTCGTGCGTTCGATGACGGAACGCGTGATAGGGC
TTATGGCCACTGCTTGGTTGCCGGGATAAAAAAGTATCCGGCGAAAGTCATCCGAAAGGACTCCTCCAAGAAGACTGCTAAGAAATCCCGTGTCAAGGCCTTTATCAAGC
TCGTCAATTATAGGCACCTGATGCCTACCAGGTATACTCTCGATGTCGATCTTAAAGACGTTGTCACTATCGATTCATTGCAATCCAAGGACAAGAAGGTCACTGCTGCT
AAGGAGACCAAGAAGAGGTTTGAGGAAAGGTTCAAAACCGGGAAGAACAGGTGGTTTTTCACTAAACTCAGGTTCTGA
Protein sequenceShow/hide protein sequence
MVKFLKQNKAVIILQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAA
KETKKRFEERFKTGKNRWFFTKLRF