; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh16G005270 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G005270
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description60S ribosomal protein L27
Genome locationCmo_Chr16:2547989..2550129
RNA-Seq ExpressionCmoCh16G005270
SyntenyCmoCh16G005270
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001141 - Ribosomal protein L27e
IPR008991 - Translation protein SH3-like domain superfamily
IPR038655 - Ribosomal protein L27e superfamily
IPR041991 - Eukaryotic Ribosomal Protein L27, KOW domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147740.1 60S ribosomal protein L27 [Cucumis sativus]1.4e-6497.76Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLK NKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS+KKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+DSL
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR

XP_022931548.1 60S ribosomal protein L27-2-like [Cucurbita moschata]9.9e-66100Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR

XP_022931553.1 60S ribosomal protein L27-2-like [Cucurbita moschata]1.3e-6599.25Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVI+LQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR

XP_022942297.1 60S ribosomal protein L27-2 [Cucurbita moschata]4.9e-6597.76Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAG+KKYP+KVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+DSL
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR

XP_022985069.1 60S ribosomal protein L27-2-like [Cucurbita maxima]2.2e-6598.51Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVI+LQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIK+VNYRHLMPTRYTLDVDLKDVVTIDSL
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR

TrEMBL top hitse value%identityAlignment
A0A6J1EZ01 60S ribosomal protein L274.8e-66100Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR

A0A6J1EZ07 60S ribosomal protein L276.3e-6699.25Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVI+LQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR

A0A6J1FPU8 60S ribosomal protein L272.4e-6597.76Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAG+KKYP+KVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVT+DSL
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR

A0A6J1JA75 60S ribosomal protein L274.8e-66100Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR

A0A6J1JC92 60S ribosomal protein L271.1e-6598.51Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVI+LQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIK+VNYRHLMPTRYTLDVDLKDVVTIDSL
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR

SwissProt top hitse value%identityAlignment
P41101 60S ribosomal protein L271.1e-5177.54Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDL----KDVVT
        M KFLK NKAVI+LQG+YAGRKAVI+RAFD+GTRDR YGHCLVAGI +YP KVIRKDS+KK  KKSRVKAFIKLVNY H+MPTRYTLD DL    KDVV 
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDL----KDVVT

Query:  IDSLQSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
         D LQ++DKKVT A+ TK R  ERFKTGKNRWFFTKLR
Subjt:  IDSLQSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR

P51419 60S ribosomal protein L27-33.2e-5984.33Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDS+KKTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
        QSKDKKV A KE K + EERFKTGKNRWFFTKLR
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR

Q05462 60S ribosomal protein L272.7e-5883.58Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLK NKAVI+LQGRYAG+KAVI++ FDDGTR++ YGHCLVAGIKK+P+KVI+KDS+KKTAKKSRVKAF+KLVNY+HLMPTRYTLDVDLKD V  D L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
        QSKDKKVTA KETKK  EERFKTGKNRWFFTKLR
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR

Q8LCL3 60S ribosomal protein L27-23.2e-5984.33Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVI+LQGRYAG+KAVII++FDDGT DR YGHCLVAG+KKYP+KVIRKDS+KKTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
        +SKDKKVTA KE K + EERFKTGKNRWFFTKLR
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR

Q9SKX8 60S ribosomal protein L27-12.6e-5374.63Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVK +K  KAVI+LQGRY G+KAVI+++FDDGT ++ YGHCLVAG+KKYP+KVIRKDS+KKTAKKSRVK F K++NY+H+MPTRYTLD+DLK+VV+ D++
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
         SKDKKVTA KE K +FEERFKTGKNRWFFTKLR
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR

Arabidopsis top hitse value%identityAlignment
AT2G32220.1 Ribosomal L27e protein family1.9e-5474.63Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVK +K  KAVI+LQGRY G+KAVI+++FDDGT ++ YGHCLVAG+KKYP+KVIRKDS+KKTAKKSRVK F K++NY+H+MPTRYTLD+DLK+VV+ D++
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
         SKDKKVTA KE K +FEERFKTGKNRWFFTKLR
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR

AT3G22230.1 Ribosomal L27e protein family2.3e-6084.33Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVI+LQGRYAG+KAVII++FDDGT DR YGHCLVAG+KKYP+KVIRKDS+KKTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
        +SKDKKVTA KE K + EERFKTGKNRWFFTKLR
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR

AT4G15000.1 Ribosomal L27e protein family2.3e-6084.33Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDS+KKTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR
        QSKDKKV A KE K + EERFKTGKNRWFFTKLR
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLR

AT4G15000.2 Ribosomal L27e protein family4.6e-5382.93Show/hide
Query:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL
        MVKFLKQNKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDS+KKTAKKSRVK FIKLVNY+HLMPTRYTLDVDLK+V T+D+L
Subjt:  MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKT
        QSKDKKV A KE K + EERFKT
Subjt:  QSKDKKVTAAKETKKRFEERFKT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAGTTCCTCAAGCAGAACAAAGCTGTGATCGTCCTTCAAGGTCGTTATGCTGGCCGGAAAGCGGTCATCATTCGCGCGTTCGACGATGGAACGCGGGATCGGGC
TTATGGGCACTGCTTGGTTGCCGGAATAAAAAAGTATCCTGCCAAGGTCATCCGCAAGGACTCCTCCAAGAAGACCGCTAAGAAATCCCGAGTCAAGGCCTTCATCAAGC
TCGTCAATTACAGGCACCTTATGCCCACCAGGTACACTCTTGATGTCGATCTTAAAGACGTCGTCACTATAGATTCATTGCAATCCAAGGACAAGAAGGTCACCGCCGCT
AAGGAGACCAAGAAGAGGTTCGAGGAGAGGTTTAAGACCGGAAAGAATAGGTGGTTTTTCACCAAGCTCAGATTGGTTGCTAATGTTCCTTTGCTATTTTGGTTGTGTAT
CATTTGCCTTGGCTTGCATCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGAAGTTCCTCAAGCAGAACAAAGCTGTGATCGTCCTTCAAGGTCGTTATGCTGGCCGGAAAGCGGTCATCATTCGCGCGTTCGACGATGGAACGCGGGATCGGGC
TTATGGGCACTGCTTGGTTGCCGGAATAAAAAAGTATCCTGCCAAGGTCATCCGCAAGGACTCCTCCAAGAAGACCGCTAAGAAATCCCGAGTCAAGGCCTTCATCAAGC
TCGTCAATTACAGGCACCTTATGCCCACCAGGTACACTCTTGATGTCGATCTTAAAGACGTCGTCACTATAGATTCATTGCAATCCAAGGACAAGAAGGTCACCGCCGCT
AAGGAGACCAAGAAGAGGTTCGAGGAGAGGTTTAAGACCGGAAAGAATAGGTGGTTTTTCACCAAGCTCAGATTGGTTGCTAATGTTCCTTTGCTATTTTGGTTGTGTAT
CATTTGCCTTGGCTTGCATCATTGA
Protein sequenceShow/hide protein sequence
MVKFLKQNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSSKKTAKKSRVKAFIKLVNYRHLMPTRYTLDVDLKDVVTIDSLQSKDKKVTAA
KETKKRFEERFKTGKNRWFFTKLRLVANVPLLFWLCIICLGLHH