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CmoCh16G005470 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G005470
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionNine-cis-epoxycarotenoid dioxygenase 4
Genome locationCmo_Chr16:2645979..2646933
RNA-Seq ExpressionCmoCh16G005470
SyntenyCmoCh16G005470
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER26754.1 RPM1-interacting protein 4 (RIN4) family protein [Striga asiatica]4.1e-0734.96Show/hide
Query:  LESIELDTGVKTITEEGQTSVCKTNP-ICRIKLAGKHPTGGNG-AACGRGDEAIEAGEYVGDNRMSSVTLQSVLVRFHITAAQNGTAVGDSKRVKHAISV
        +  + L  G +  T+EG   V +  P + R+KLA ++P G +G   CG    A    E VGD+  +   L +VLV   + AA+ G A  D+ RV+H ++V
Subjt:  LESIELDTGVKTITEEGQTSVCKTNP-ICRIKLAGKHPTGGNG-AACGRGDEAIEAGEYVGDNRMSSVTLQSVLVRFHITAAQNGTAVGDSKRVKHAISV

Query:  EQVVGPTGKVLRVRAVTNIRTIE
        E VV   G+ LRV A  ++  +E
Subjt:  EQVVGPTGKVLRVRAVTNIRTIE

GER56224.1 eukaryotic translation initiation factor isoform4G-1, partial [Striga asiatica]4.4e-0936.7Show/hide
Query:  GREFQCRRLESIELDTGVKTITEEGQTSVCKTNPICRIKLAGKHPTGGNGAACGRGDEAIEAGEYVGDNRMSSVTLQSVLVRFHITAAQNGTAVGDSKRV
        G      R+  +     V+   +  +  V   + + R+++AG+ P GG GAA G G EA EAGE VGD   + + L  VLVR  + AA+ G A  D+  V
Subjt:  GREFQCRRLESIELDTGVKTITEEGQTSVCKTNPICRIKLAGKHPTGGNGAACGRGDEAIEAGEYVGDNRMSSVTLQSVLVRFHITAAQNGTAVGDSKRV

Query:  KHAISVEQV
        +HA++VE+V
Subjt:  KHAISVEQV

GFY95220.1 nine-cis-epoxycarotenoid dioxygenase 4 [Actinidia rufa]3.0e-2140.11Show/hide
Query:  RNEGRFIENIGTSGCLAPFLSNRKKVKNGGRGPYRNANASP----SYSWKAFRQNHGGREFQCRRLESIELDTGVKTITEEGQTSVCKTNPICRIKLAGK
        RN+G   E IGTSG L P  SNRKKV+NGG GPYR AN SP     +       N    +        I +      + + G +          +KLAG+
Subjt:  RNEGRFIENIGTSGCLAPFLSNRKKVKNGGRGPYRNANASP----SYSWKAFRQNHGGREFQCRRLESIELDTGVKTITEEGQTSVCKTNPICRIKLAGK

Query:  HPTGGNGAACGRGDEAIEAGEYVGDNRMSSVTLQSVLVRFHITAAQNGTAVGDSKRVKHAISVEQVVGPTGKVLRVRAVTNI
           GG+G++  RG EA+EAGE VGD+  + + L  V V F   AA+ G A GD + V+HA++VE+V+GP GK L V AV+++
Subjt:  HPTGGNGAACGRGDEAIEAGEYVGDNRMSSVTLQSVLVRFHITAAQNGTAVGDSKRVKHAISVEQVVGPTGKVLRVRAVTNI

KAB8088522.1 hypothetical protein EE612_013154, partial [Oryza sativa]1.3e-0835.77Show/hide
Query:  AFRQNHGGREFQCRRLESIELDTGVKTITEEGQTSVCKTNPICRIKLAGKHPTGGNGAACGRGDEAIEAGEYVGDNRMSSVTLQSVLVRFHITAAQNGTA
        A R +  G       +  + L   V+   E G+  V + + + RI L G+ P   +GAA   G  A+EAGE VG +  + V L  VLVR H+  AQ+G  
Subjt:  AFRQNHGGREFQCRRLESIELDTGVKTITEEGQTSVCKTNPICRIKLAGKHPTGGNGAACGRGDEAIEAGEYVGDNRMSSVTLQSVLVRFHITAAQNGTA

Query:  VG-----DSKRVKHAISVEQVVGPTGKVLRVRAVTNI
         G     + + V+HA++VEQVV P  +VLRV  V ++
Subjt:  VG-----DSKRVKHAISVEQVVGPTGKVLRVRAVTNI

TrEMBL top hitse value%identityAlignment
A0A0A9JVM9 NCED47.4e-1035Show/hide
Query:  AFRQNHGGREFQCRRLESIELDTGVKTITEEGQTSVCKTNPICRIKLAGKHPTGGNGAACGRGDEAIEAGEYVGDNRMSSVTLQSVLVRFHITAAQNGTA
        A R +  G       +  + L   V+   EEG+  V + + + R+ L  +HP   +GAA   G  A+EAGE V  +R + V L  +LVR H+  AQ+G  
Subjt:  AFRQNHGGREFQCRRLESIELDTGVKTITEEGQTSVCKTNPICRIKLAGKHPTGGNGAACGRGDEAIEAGEYVGDNRMSSVTLQSVLVRFHITAAQNGTA

Query:  VGDSKR--------VKHAISVEQVVGPTGKVLRVRAVTNI
            +R        V+HA++VE+VVGP  +VLRV  V N+
Subjt:  VGDSKR--------VKHAISVEQVVGPTGKVLRVRAVTNI

A0A0P0VNJ6 Os02g0704131 protein (Fragment)6.2e-0935.77Show/hide
Query:  AFRQNHGGREFQCRRLESIELDTGVKTITEEGQTSVCKTNPICRIKLAGKHPTGGNGAACGRGDEAIEAGEYVGDNRMSSVTLQSVLVRFHITAAQNGTA
        A R +  G       +  + L   V+   E G+  V + + + RI L G+ P   +GAA   G  A+EAGE VG +  + V L  VLVR H+  AQ+G  
Subjt:  AFRQNHGGREFQCRRLESIELDTGVKTITEEGQTSVCKTNPICRIKLAGKHPTGGNGAACGRGDEAIEAGEYVGDNRMSSVTLQSVLVRFHITAAQNGTA

Query:  VG-----DSKRVKHAISVEQVVGPTGKVLRVRAVTNI
         G     + + V+HA++VEQVV P  +VLRV  V ++
Subjt:  VG-----DSKRVKHAISVEQVVGPTGKVLRVRAVTNI

A0A5A7P2I1 RPM1-interacting protein 4 (RIN4) family protein2.0e-0734.96Show/hide
Query:  LESIELDTGVKTITEEGQTSVCKTNP-ICRIKLAGKHPTGGNG-AACGRGDEAIEAGEYVGDNRMSSVTLQSVLVRFHITAAQNGTAVGDSKRVKHAISV
        +  + L  G +  T+EG   V +  P + R+KLA ++P G +G   CG    A    E VGD+  +   L +VLV   + AA+ G A  D+ RV+H ++V
Subjt:  LESIELDTGVKTITEEGQTSVCKTNP-ICRIKLAGKHPTGGNG-AACGRGDEAIEAGEYVGDNRMSSVTLQSVLVRFHITAAQNGTAVGDSKRVKHAISV

Query:  EQVVGPTGKVLRVRAVTNIRTIE
        E VV   G+ LRV A  ++  +E
Subjt:  EQVVGPTGKVLRVRAVTNIRTIE

A0A5A7RGC5 Eukaryotic translation initiation factor isoform4G-1 (Fragment)2.1e-0936.7Show/hide
Query:  GREFQCRRLESIELDTGVKTITEEGQTSVCKTNPICRIKLAGKHPTGGNGAACGRGDEAIEAGEYVGDNRMSSVTLQSVLVRFHITAAQNGTAVGDSKRV
        G      R+  +     V+   +  +  V   + + R+++AG+ P GG GAA G G EA EAGE VGD   + + L  VLVR  + AA+ G A  D+  V
Subjt:  GREFQCRRLESIELDTGVKTITEEGQTSVCKTNPICRIKLAGKHPTGGNGAACGRGDEAIEAGEYVGDNRMSSVTLQSVLVRFHITAAQNGTAVGDSKRV

Query:  KHAISVEQV
        +HA++VE+V
Subjt:  KHAISVEQV

A0A7J0F936 Nine-cis-epoxycarotenoid dioxygenase 41.4e-2140.11Show/hide
Query:  RNEGRFIENIGTSGCLAPFLSNRKKVKNGGRGPYRNANASP----SYSWKAFRQNHGGREFQCRRLESIELDTGVKTITEEGQTSVCKTNPICRIKLAGK
        RN+G   E IGTSG L P  SNRKKV+NGG GPYR AN SP     +       N    +        I +      + + G +          +KLAG+
Subjt:  RNEGRFIENIGTSGCLAPFLSNRKKVKNGGRGPYRNANASP----SYSWKAFRQNHGGREFQCRRLESIELDTGVKTITEEGQTSVCKTNPICRIKLAGK

Query:  HPTGGNGAACGRGDEAIEAGEYVGDNRMSSVTLQSVLVRFHITAAQNGTAVGDSKRVKHAISVEQVVGPTGKVLRVRAVTNI
           GG+G++  RG EA+EAGE VGD+  + + L  V V F   AA+ G A GD + V+HA++VE+V+GP GK L V AV+++
Subjt:  HPTGGNGAACGRGDEAIEAGEYVGDNRMSSVTLQSVLVRFHITAAQNGTAVGDSKRVKHAISVEQVVGPTGKVLRVRAVTNI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGCGTTATTATCCCTGTTTTTAGGCGTGAACCAGATCCATCCTCTCCATCGTGTGTTCGACGGAAAGAACGTTCGGCGCCACCAGAATCACAGCGTCGTCTT
CATCCCAAGCGTTAATGGCGTGAACCAGGTTAACTCCAGGAACGAAGGTCGATTCATCGAAAATATCGGCACATCCGGCTGTTTGGCTCCGTTCTTGTCGAATCGAAAGA
AGGTTAAGAACGGAGGCAGAGGACCATACCGAAACGCAAATGCCTCACCCTCATACTCATGGAAAGCTTTCCGTCAAAATCATGGCGGCCGAGAGTTTCAATGTCGCCGT
TTGGAGTCAATCGAATTGGATACGGGCGTAAAGACGATCACCGAAGAAGGCCAAACTAGTGTTTGCAAGACCAATCCCATTTGTCGGATTAAATTGGCCGGTAAACATCC
GACCGGCGGTAACGGCGCCGCGTGCGGCAGAGGCGATGAGGCCATTGAAGCCGGAGAATACGTTGGGGATAACAGGATGTCCAGCGTCACGCTCCAAAGTGTACTTGTAC
GTTTTCACATAACGGCTGCACAGAACGGCACGGCCGTTGGAGATTCGAAGAGAGTGAAGCATGCCATCTCCGTCGAACAAGTGGTAGGGCCCACGGGGAAGGTATTGAGG
GTTCGGGCCGTTACGAATATACGCACCATTGAGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCCGCGTTATTATCCCTGTTTTTAGGCGTGAACCAGATCCATCCTCTCCATCGTGTGTTCGACGGAAAGAACGTTCGGCGCCACCAGAATCACAGCGTCGTCTT
CATCCCAAGCGTTAATGGCGTGAACCAGGTTAACTCCAGGAACGAAGGTCGATTCATCGAAAATATCGGCACATCCGGCTGTTTGGCTCCGTTCTTGTCGAATCGAAAGA
AGGTTAAGAACGGAGGCAGAGGACCATACCGAAACGCAAATGCCTCACCCTCATACTCATGGAAAGCTTTCCGTCAAAATCATGGCGGCCGAGAGTTTCAATGTCGCCGT
TTGGAGTCAATCGAATTGGATACGGGCGTAAAGACGATCACCGAAGAAGGCCAAACTAGTGTTTGCAAGACCAATCCCATTTGTCGGATTAAATTGGCCGGTAAACATCC
GACCGGCGGTAACGGCGCCGCGTGCGGCAGAGGCGATGAGGCCATTGAAGCCGGAGAATACGTTGGGGATAACAGGATGTCCAGCGTCACGCTCCAAAGTGTACTTGTAC
GTTTTCACATAACGGCTGCACAGAACGGCACGGCCGTTGGAGATTCGAAGAGAGTGAAGCATGCCATCTCCGTCGAACAAGTGGTAGGGCCCACGGGGAAGGTATTGAGG
GTTCGGGCCGTTACGAATATACGCACCATTGAGAGATGA
Protein sequenceShow/hide protein sequence
MAAALLSLFLGVNQIHPLHRVFDGKNVRRHQNHSVVFIPSVNGVNQVNSRNEGRFIENIGTSGCLAPFLSNRKKVKNGGRGPYRNANASPSYSWKAFRQNHGGREFQCRR
LESIELDTGVKTITEEGQTSVCKTNPICRIKLAGKHPTGGNGAACGRGDEAIEAGEYVGDNRMSSVTLQSVLVRFHITAAQNGTAVGDSKRVKHAISVEQVVGPTGKVLR
VRAVTNIRTIER