CuGenDBv2

Gene ID	CmoCh16G005540
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	embryo defective 3006
Genome location	Cmo_Chr16:2696892..2701131
RNA-Seq Expression	CmoCh16G005540
Synteny	CmoCh16G005540
Gene Ontology terms	GO:0007049 - cell cycle (biological process) GO:0007059 - chromosome segregation (biological process) GO:0051301 - cell division (biological process) GO:0000818 - nuclear MIS12/MIND complex (cellular component)
InterPro domains	IPR007128 - Nuclear MIS12/MIND complex subunit PMF1/Nnf1

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7015109.1 hypothetical protein SDJN02_22742 [Cucurbita argyrosperma subsp. argyrosperma]

1.5e-79

96.43

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Query:  MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVET-----QVGLVLDNVEQLLEEQ
        MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVET     QVGLVLDNVEQLLEEQ
Subjt:  MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVET-----QVGLVLDNVEQLLEEQ

Query:  DLDPLYSKKTNIMEIANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKM
        DLDPLYSKKTNIMEIANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEK+
Subjt:  DLDPLYSKKTNIMEIANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKM

XP_022931290.1 uncharacterized protein LOC111437518 isoform X1 [Cucurbita moschata]

2.1e-81

99.39

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Query:  MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPL
        MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPL
Subjt:  MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPL

Query:  YSKKTNIMEIANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKM
        YSKKTNIMEIANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEK+
Subjt:  YSKKTNIMEIANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKM

XP_022985332.1 uncharacterized protein LOC111483373 isoform X1 [Cucurbita maxima]

4.0e-80

98.16

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Query:  MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPL
        MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSR EFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVET+VGLVLDNVEQLLEEQDLDPL
Subjt:  MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPL

Query:  YSKKTNIMEIANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKM
        YSKKTNIMEIANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEK+
Subjt:  YSKKTNIMEIANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKM

XP_023527503.1 uncharacterized protein LOC111790708 [Cucurbita pepo subsp. pepo]

1.8e-72

87.73

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Query:  MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPL
        M+KKHEIGTP+SSS IDL KSFKLAVRSLLTSCSREEFRECFS FTTAEQE LHRLF+QVITSLHGNIEDEFESLC+ETQVG VLDNVEQLLEEQDLDPL
Subjt:  MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPL

Query:  YSKKTNIMEIANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKM
        YSKKTNIM+IANYLSMT+KNEIQHLKDMLKT+EEQNRH+Q RID+L+KGV+DAS M DAVEK+
Subjt:  YSKKTNIMEIANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKM

XP_038876216.1 uncharacterized protein LOC120068468 [Benincasa hispida]

1.3e-73

90.8

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Query:  MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPL
        M+KK EI TPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFS+FT AEQEYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQ+LDPL
Subjt:  MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPL

Query:  YSKKTNIMEIANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKM
        YSKKTNIMEIAN+LS+TKKNEIQHLKDMLKTAEEQNR +QGRID+LRKGVQDAS M DAV+K+
Subjt:  YSKKTNIMEIANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKM

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BTB0 uncharacterized protein LOC103493030

2.6e-72

88.96

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Query:  MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPL
        M KKHEI TPV+S QIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQ+YLHRLFIQVITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPL
Subjt:  MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPL

Query:  YSKKTNIMEIANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKM
        YSKKTNI+EI+N+LSM K  EIQHLKDMLKTAEEQNR +QGRID+LRKGVQDAS M DAV+K+
Subjt:  YSKKTNIMEIANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKM

A0A5A7TAS4 Uncharacterized protein

2.6e-72

88.96

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Query:  MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPL
        M KKHEI TPV+S QIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQ+YLHRLFIQVITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPL
Subjt:  MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPL

Query:  YSKKTNIMEIANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKM
        YSKKTNI+EI+N+LSM K  EIQHLKDMLKTAEEQNR +QGRID+LRKGVQDAS M DAV+K+
Subjt:  YSKKTNIMEIANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKM

A0A6J1C7G2 uncharacterized protein LOC111008110

4.8e-71

86.5

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Query:  MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPL
        M+KKHE+ TP SSS +DLKKSFKLAVRSLLTSCSREEFRECF RFT AEQEYLHRLFIQVITSLHGNIEDEFESLC+ETQVG +LDNVEQLLEEQ LDPL
Subjt:  MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPL

Query:  YSKKTNIMEIANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKM
        YSKKTNIM+IANYLSMTKKNEIQ LKDMLKTAEEQN+HVQ RID+LRKGVQD S   DAVEK+
Subjt:  YSKKTNIMEIANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKM

A0A6J1EZ15 uncharacterized protein LOC111437518 isoform X1

1.0e-81

99.39

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Query:  MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPL
        MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPL
Subjt:  MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPL

Query:  YSKKTNIMEIANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKM
        YSKKTNIMEIANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEK+
Subjt:  YSKKTNIMEIANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKM

A0A6J1J4K9 uncharacterized protein LOC111483373 isoform X1

2.0e-80

98.16

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Query:  MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPL
        MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSR EFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVET+VGLVLDNVEQLLEEQDLDPL
Subjt:  MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPL

Query:  YSKKTNIMEIANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKM
        YSKKTNIMEIANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEK+
Subjt:  YSKKTNIMEIANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G19350.1 embryo defective 3006

5.9e-37

52.29

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Query:  SSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPLYSKKTNIMEIAN
        S +  LKKSFK  +R LLT+CS+++F + FS+F+ AEQE L +L+ +V+ +LH  IE+EF+  C ETQVG +LD VE+L+EEQ LDPL+S KT++M IA 
Subjt:  SSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPLYSKKTNIMEIAN

Query:  YLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKMMA
         L+ +KKNEIQ L  +L+ AEEQNR  + RI +L+K  QD S   D +EK+ A
Subjt:  YLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKMMA

Sequences

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CDS sequence

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ATGGATAAGAAGCACGAGATTGGTACGCCGGTGAGCTCCAGCCAGATCGATCTGAAAAAGTCATTCAAGCTTGCTGTTCGTTCTCTCCTCACTTCCTGTTCCAGGGAGGA
GTTCCGGGAATGCTTTTCGAGATTTACGACTGCGGAGCAAGAATATCTTCATCGTCTCTTCATTCAGGTTATAACTTCTTTGCATGGAAACATAGAGGACGAGTTTGAGT
CATTATGTGTTGAAACACAGGTGGGACTTGTACTTGATAATGTTGAACAACTTTTGGAAGAGCAAGATCTAGACCCATTGTATTCCAAAAAGACAAACATAATGGAAATT
GCCAATTATCTATCCATGACAAAGAAGAATGAGATCCAACACTTGAAGGACATGCTAAAAACGGCTGAGGAACAGAACCGGCATGTTCAAGGCCGTATTGATATCCTAAG
GAAAGGAGTGCAAGATGCCTCGGCCATGGAAGATGCTGTTGAAAAGATGATGGCGTTAGCAGAACGACCTTCGATACTTAACCGATGCTCCTCCGACTCGCTGTTGCCAT
CCCATCATGCTGAGTATGAACCACTGTTTCAAATTCATTGA

mRNA sequence

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TTCCCCCAGGCTTTCTAGTCCGAAAATCTCCCGCTCGCTAACTAGTTCAGATTTCTCGGACTTCGATTTCTTCCCTCACTTGCAGTTCGTCACTTCGCCGTCGCCGCCGC
CGCGACTCCACGGCGTTAACTGGAGTCGACTCACCGACTCGTTTCACTGGCAGCAGTTTTCTAATTTATTCCATCTGCTGCGTTGCTGTCGCGCCATTTCCGCATCGTTT
GATTTCAGGCAGAATTTAGCAAGACAGGGTTGGGGATCGTAGTGGATACAAGTTTTGAAAATGGATAAGAAGCACGAGATTGGTACGCCGGTGAGCTCCAGCCAGATCGA
TCTGAAAAAGTCATTCAAGCTTGCTGTTCGTTCTCTCCTCACTTCCTGTTCCAGGGAGGAGTTCCGGGAATGCTTTTCGAGATTTACGACTGCGGAGCAAGAATATCTTC
ATCGTCTCTTCATTCAGGTTATAACTTCTTTGCATGGAAACATAGAGGACGAGTTTGAGTCATTATGTGTTGAAACACAGGTGGGACTTGTACTTGATAATGTTGAACAA
CTTTTGGAAGAGCAAGATCTAGACCCATTGTATTCCAAAAAGACAAACATAATGGAAATTGCCAATTATCTATCCATGACAAAGAAGAATGAGATCCAACACTTGAAGGA
CATGCTAAAAACGGCTGAGGAACAGAACCGGCATGTTCAAGGCCGTATTGATATCCTAAGGAAAGGAGTGCAAGATGCCTCGGCCATGGAAGATGCTGTTGAAAAGATGA
TGGCGTTAGCAGAACGACCTTCGATACTTAACCGATGCTCCTCCGACTCGCTGTTGCCATCCCATCATGCTGAGTATGAACCACTGTTTCAAATTCATTGA

Protein sequence

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MDKKHEIGTPVSSSQIDLKKSFKLAVRSLLTSCSREEFRECFSRFTTAEQEYLHRLFIQVITSLHGNIEDEFESLCVETQVGLVLDNVEQLLEEQDLDPLYSKKTNIMEI
ANYLSMTKKNEIQHLKDMLKTAEEQNRHVQGRIDILRKGVQDASAMEDAVEKMMALAERPSILNRCSSDSLLPSHHAEYEPLFQIH

CmoCh16G005540 (gene) of Cucurbita moschata (Rifu) v1 genome