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CmoCh16G006090 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G006090
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionarabinogalactan peptide 22-like
Genome locationCmo_Chr16:2974820..2976379
RNA-Seq ExpressionCmoCh16G006090
SyntenyCmoCh16G006090
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577157.1 Arabinogalactan protein 20, partial [Cucurbita argyrosperma subsp. sororia]7.1e-2798.59Show/hide
Query:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
        MAVSR SFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
Subjt:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF

XP_022136454.1 arabinogalactan peptide 22-like [Momordica charantia]8.7e-2592.96Show/hide
Query:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
        MAVSR SFGFVAAAALIFAIFLPVA P SL PAPAP+SDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
Subjt:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF

XP_022931316.1 arabinogalactan peptide 22-like [Cucurbita moschata]1.4e-27100Show/hide
Query:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
        MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
Subjt:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF

XP_022985432.1 arabinogalactan peptide 20 [Cucurbita maxima]5.5e-2798.59Show/hide
Query:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
        MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLS+SF
Subjt:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF

XP_038882280.1 arabinogalactan protein 22-like [Benincasa hispida]8.7e-2591.55Show/hide
Query:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
        MAVS  SFGF+AAAALIFAIFLPVAQP SLAPAPAPTSDGTSIDQGIAYVLM+VALALTYLIHNADLSN+F
Subjt:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF

TrEMBL top hitse value%identityAlignment
A0A5D3CYF3 Arabinogalactan peptide 22-like2.0e-2287.14Show/hide
Query:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNS
        MAVSR+SF  +AA ALIFAIFLPVA P SLAPAPAPTSDGTSIDQGIAYVLM+VALALTYLIHNADLSN+
Subjt:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNS

A0A6J1C4C2 arabinogalactan peptide 22-like4.2e-2592.96Show/hide
Query:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
        MAVSR SFGFVAAAALIFAIFLPVA P SL PAPAP+SDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
Subjt:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF

A0A6J1ETC6 arabinogalactan peptide 22-like7.0e-28100Show/hide
Query:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
        MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
Subjt:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF

A0A6J1FMT5 arabinogalactan peptide 22-like3.0e-2388.57Show/hide
Query:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNS
        MAVSR SFGFVAAAAL+F IFLPVAQPQSLAPAPAPTSDGTSIDQGIAY+LM VALALTYLIH+ADL +S
Subjt:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNS

A0A6J1J4V7 arabinogalactan peptide 202.6e-2798.59Show/hide
Query:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
        MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLS+SF
Subjt:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 165.0e-1564.71Show/hide
Query:  SRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
        SR S    A  + +FA+ L +A  QSLAPAPAPTSDGTSIDQGIAY+LM+VAL LTYLIH  D S+S+
Subjt:  SRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF

Q8L9T8 Arabinogalactan protein 411.3e-1571.43Show/hide
Query:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIH
        M+ SR  FG     ++IFAI LP+A  QS APAPAPTSDGT+IDQGIAYVLMLVAL LTYLIH
Subjt:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIH

Q9FK16 Arabinogalactan protein 221.4e-1263.49Show/hide
Query:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIH
        MA  +     +A   +I  I LP+AQ  S +PAPAPTSDGTSIDQGIAYVLM+VALALTY IH
Subjt:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIH

Q9M373 Arabinogalactan protein 201.0e-1565.67Show/hide
Query:  SRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNS
        SR S   +A  A +FA+  P A  QSLAPAP+PTSDGTSIDQGIAY+LM+VAL LTYLIH  D S+S
Subjt:  SRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNS

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 163.5e-1664.71Show/hide
Query:  SRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF
        SR S    A  + +FA+ L +A  QSLAPAPAPTSDGTSIDQGIAY+LM+VAL LTYLIH  D S+S+
Subjt:  SRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF

AT3G61640.1 arabinogalactan protein 207.1e-1765.67Show/hide
Query:  SRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNS
        SR S   +A  A +FA+  P A  QSLAPAP+PTSDGTSIDQGIAY+LM+VAL LTYLIH  D S+S
Subjt:  SRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNS

AT5G24105.1 arabinogalactan protein 419.3e-1771.43Show/hide
Query:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIH
        M+ SR  FG     ++IFAI LP+A  QS APAPAPTSDGT+IDQGIAYVLMLVAL LTYLIH
Subjt:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIH

AT5G53250.1 arabinogalactan protein 229.7e-1463.49Show/hide
Query:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIH
        MA  +     +A   +I  I LP+AQ  S +PAPAPTSDGTSIDQGIAYVLM+VALALTY IH
Subjt:  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTTTCCAGGACGTCTTTTGGATTTGTGGCTGCCGCTGCGCTCATCTTTGCCATCTTCTTGCCGGTTGCTCAGCCTCAGTCCTTGGCTCCGGCACCCGCTCCCAC
CAGCGACGGGACATCCATAGACCAAGGGATAGCTTATGTGTTGATGTTGGTGGCATTGGCACTCACATATCTCATCCACAACGCTGACTTATCCAACAGCTTCTAA
mRNA sequenceShow/hide mRNA sequence
ACTGCCTCTGTACCGTTCAGAGATTTCTCTTAATCGTCTTCTCCATTTCGCCCTTCGAGGAGGGAAAGGGAGATTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTGCGAGC
CTCTTTGAAGCCATTGAAGAAGAAGGCACTGAAAGCCTCTCGATCTGAGAGACGCATCGCAGAGAGAGATCGAGCCTCGGTACTACATTTCTTGCGATTCATCGCCTGAA
GAAAGGAGAGGAGAAAATCACAGCACGATTCGGATTCGGAGTCAAATGGCGGTTTCCAGGACGTCTTTTGGATTTGTGGCTGCCGCTGCGCTCATCTTTGCCATCTTCTT
GCCGGTTGCTCAGCCTCAGTCCTTGGCTCCGGCACCCGCTCCCACCAGCGACGGGACATCCATAGACCAAGGGATAGCTTATGTGTTGATGTTGGTGGCATTGGCACTCA
CATATCTCATCCACAACGCTGACTTATCCAACAGCTTCTAAAAGACTGTATCAAGCATTTGGAGAGAACCTCTTTTGATCAAAAGGGAAGGGAATTTAGTTAGAAATGCA
AAAGTGGGGTTTGAGGGGACTGGACTTTTTTTCTTATTTTTGCATATTGTAGTTCCTTTGGAACCTCTTTTGATCAAAGAGGAAGAGAATTTAGTTAGAAATGCAAATGG
GTCTTGAGGGATTTGGATTCTTTTGCATATTGTAGCAGTTCCTTTGGTGTTTCTGTTTTGTTCTTATTTATAACGATGAAAGTCAGTTGGTGTGGTCTTGTATTGCTGTG
TACAGTGTCCTGAGTTTGAATGCGACTCCTGGCTCCCTTTTCATGTTTCTTCTCCTTCTTTTA
Protein sequenceShow/hide protein sequence
MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF