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CmoCh16G006310 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G006310
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionisoprenoid F
Genome locationCmo_Chr16:3104326..3107630
RNA-Seq ExpressionCmoCh16G006310
SyntenyCmoCh16G006310
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577178.1 hypothetical protein SDJN03_24752, partial [Cucurbita argyrosperma subsp. sororia]1.2e-48100Show/hide
Query:  MGPRPAVPVHLDGANSTTNLSLSASFPLSMAVPALFFVGAWVSIDYWGKRLLRGSFRWAVFFFTVWLIDAILSALRLPDLSKFRSKWKGAPSSVFIKEA
        MGPRPAVPVHLDGANSTTNLSLSASFPLSMAVPALFFVGAWVSIDYWGKRLLRGSFRWAVFFFTVWLIDAILSALRLPDLSKFRSKWKGAPSSVFIKEA
Subjt:  MGPRPAVPVHLDGANSTTNLSLSASFPLSMAVPALFFVGAWVSIDYWGKRLLRGSFRWAVFFFTVWLIDAILSALRLPDLSKFRSKWKGAPSSVFIKEA
KAG7015175.1 hypothetical protein SDJN02_22808 [Cucurbita argyrosperma subsp. argyrosperma]4.6e-11100Show/hide
Query:  MGPRPAVPVHLDGANSTTNLSLSASFPLSMAVPALFFV
        MGPRPAVPVHLDGANSTTNLSLSASFPLSMAVPALFFV
Subjt:  MGPRPAVPVHLDGANSTTNLSLSASFPLSMAVPALFFV
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
Q9M4W3 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic4.4e-0458.97Show/hide
Query:  LIDAILSALRLPDLSKF----RSKWKGAPSSVFIKEAAK
        ++DAIL AL LPD+ +       KWKGAPSSVFIKEA +
Subjt:  LIDAILSALRLPDLSKF----RSKWKGAPSSVFIKEAAK
Arabidopsis top hitse value%identityAlignment
AT1G63970.1 isoprenoid F2.6e-0456.41Show/hide
Query:  LIDAILSALRLPDLSKF----RSKWKGAPSSVFIKEAAK
        ++DAIL AL LPD+ +       KWKGA SSVFIKEA +
Subjt:  LIDAILSALRLPDLSKF----RSKWKGAPSSVFIKEAAK
AT1G63970.2 isoprenoid F3.4e-0457.89Show/hide
Query:  IDAILSALRLPDLSKF----RSKWKGAPSSVFIKEAAK
        +DAIL AL LPD+ +       KWKGA SSVFIKEA +
Subjt:  IDAILSALRLPDLSKF----RSKWKGAPSSVFIKEAAK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACCCCGTCCGGCCGTCCCTGTGCACCTGGATGGCGCCAACAGTACAACCAATCTTTCACTCAGCGCTTCGTTTCCCCTTTCCATGGCTGTCCCTGCCCTTTTCTT
CGTTGGAGCCTGGGTATCCATTGATTATTGGGGGAAGAGGCTGCTGCGAGGCTCATTCCGATGGGCGGTGTTCTTCTTCACTGTGTGGTTGATTGATGCAATTTTGAGTG
CTTTGAGGCTTCCTGATCTTTCCAAATTCAGATCCAAATGGAAGGGTGCTCCATCTTCTGTTTTTATTAAAGAAGCTGCCAAAGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGACCCCGTCCGGCCGTCCCTGTGCACCTGGATGGCGCCAACAGTACAACCAATCTTTCACTCAGCGCTTCGTTTCCCCTTTCCATGGCTGTCCCTGCCCTTTTCTT
CGTTGGAGCCTGGGTATCCATTGATTATTGGGGGAAGAGGCTGCTGCGAGGCTCATTCCGATGGGCGGTGTTCTTCTTCACTGTGTGGTTGATTGATGCAATTTTGAGTG
CTTTGAGGCTTCCTGATCTTTCCAAATTCAGATCCAAATGGAAGGGTGCTCCATCTTCTGTTTTTATTAAAGAAGCTGCCAAAGCTTAGCCAACACAAGGGAAG
Protein sequenceShow/hide protein sequence
MGPRPAVPVHLDGANSTTNLSLSASFPLSMAVPALFFVGAWVSIDYWGKRLLRGSFRWAVFFFTVWLIDAILSALRLPDLSKFRSKWKGAPSSVFIKEAAKA