CuGenDBv2

Gene ID	CmoCh16G006430
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3A .
Genome location	Cmo_Chr16:3169527..3174128
RNA-Seq Expression	CmoCh16G006430
Synteny	CmoCh16G006430
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR019314 - BLOC-1-related complex subunit 6

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7015189.1 hypothetical protein SDJN02_22822 [Cucurbita argyrosperma subsp. argyrosperma]

8.6e-65

100

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Query:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR
        MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR
Subjt:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQL
        LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQL
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQL

XP_004146523.1 uncharacterized protein LOC101210623 [Cucumis sativus]

1.4e-59

84.18

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Query:  MEQSPSDSS-SSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAG
        MEQSP+DSS +SIE   QIPATSPNS      T SV+EDCT+ +SSLS  +I KAI+VVEKDSLA+AESFTSLFASLRS LSEVTSNSIDHMHCFNDAAG
Subjt:  MEQSPSDSS-SSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAG

Query:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKILRKNVDELDLAVNKLLNFP
        RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLK+LRKNVDELDLAVNKLLNFP
Subjt:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKILRKNVDELDLAVNKLLNFP

XP_022931514.1 uncharacterized protein LOC111437668 [Cucurbita moschata]

1.3e-76

100

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Query:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR
        MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR
Subjt:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKILRKNVDELDLAVNKLLNFP
        LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKILRKNVDELDLAVNKLLNFP
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKILRKNVDELDLAVNKLLNFP

XP_022984532.1 uncharacterized protein LOC111482798 [Cucurbita maxima]

2.4e-75

98.73

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Query:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR
        MEQSPSDSSSSIEAG QIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEK+SLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR
Subjt:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKILRKNVDELDLAVNKLLNFP
        LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKILRKNVDELDLAVNKLLNFP
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKILRKNVDELDLAVNKLLNFP

XP_023553161.1 uncharacterized protein LOC111810650 [Cucurbita pepo subsp. pepo]

1.1e-75

98.73

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Query:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR
        MEQSPSDSS+SIE GRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR
Subjt:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKILRKNVDELDLAVNKLLNFP
        LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKILRKNVDELDLAVNKLLNFP
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKILRKNVDELDLAVNKLLNFP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWT2 Uncharacterized protein

6.9e-60

84.18

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Query:  MEQSPSDSS-SSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAG
        MEQSP+DSS +SIE   QIPATSPNS      T SV+EDCT+ +SSLS  +I KAI+VVEKDSLA+AESFTSLFASLRS LSEVTSNSIDHMHCFNDAAG
Subjt:  MEQSPSDSS-SSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAG

Query:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKILRKNVDELDLAVNKLLNFP
        RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLK+LRKNVDELDLAVNKLLNFP
Subjt:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKILRKNVDELDLAVNKLLNFP

A0A1S3BTP0 uncharacterized protein LOC103493156

2.0e-59

84.18

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Query:  MEQSPSDSS-SSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAG
        MEQSP+DSS +SIE   QIPATSPNS      T S +EDCT+ +SSLS T+I +AI+VVEKDSLAIAESFTSLFASLRS LSEVTSNSIDHMHCFNDAAG
Subjt:  MEQSPSDSS-SSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAG

Query:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKILRKNVDELDLAVNKLLNFP
        RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLK+LRKNVDELDLAVNKLLNFP
Subjt:  RLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKILRKNVDELDLAVNKLLNFP

A0A6J1C7Z8 uncharacterized protein LOC111008257 isoform X2

3.9e-55

77.07

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Query:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR
        M+Q+ +D S+ I++  QIP TSPNS + E PTCSVLED T+ +  L  TEIFKAI+VVEKDSLAIAESFTSLFASLRS LSE + NSIDHMHCF+DAAG 
Subjt:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKILRKNVDELDLAVNKLLNFP
        LQESVLDAATKGNRYINSSLRLNQEMKG+DNLAAQLK+LRKNVD LD AVNKLL+FP
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKILRKNVDELDLAVNKLLNFP

A0A6J1EUG1 uncharacterized protein LOC111437668

6.2e-77

100

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Query:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR
        MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR
Subjt:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKILRKNVDELDLAVNKLLNFP
        LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKILRKNVDELDLAVNKLLNFP
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKILRKNVDELDLAVNKLLNFP

A0A6J1J2E9 uncharacterized protein LOC111482798

1.2e-75

98.73

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Query:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR
        MEQSPSDSSSSIEAG QIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEK+SLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR
Subjt:  MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGR

Query:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKILRKNVDELDLAVNKLLNFP
        LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKILRKNVDELDLAVNKLLNFP
Subjt:  LQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLKILRKNVDELDLAVNKLLNFP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G23330.1 BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3A (TAIR:AT4G11420.1)

1.2e-24

57.76

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Query:  DSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGRLQESVL
        D+ + I+  R + A S     PE       E  + P SSL+  EI K +  VEKDS AIAESF+SLF SLRSTLSE T +S+DHM CF +AAGRLQE+ L
Subjt:  DSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGRLQESVL

Query:  DAATKGNRYINSSLRL
        DAATKGNRYINS LRL
Subjt:  DAATKGNRYINSSLRL

AT4G23330.2 unknown protein

4.3e-38

60.93

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Query:  DSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGRLQESVL
        D+ + I+  R + A S     PE       E  + P SSL+  EI K +  VEKDS AIAESF+SLF SLRSTLSE T +S+DHM CF +AAGRLQE+ L
Subjt:  DSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGRLQESVL

Query:  DAATKGNRYINSSLRLNQEMKGMDNLAAQLKILRKNVDELDLAVNKLLNFP
        DAATKGNRYINS LRLN+E+KG++NLAA+LK LRKNVD LD AVNKLL  P
Subjt:  DAATKGNRYINSSLRLNQEMKGMDNLAAQLKILRKNVDELDLAVNKLLNFP

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAGCAATCCCCATCGGATTCTTCGTCGAGCATCGAAGCCGGACGTCAGATTCCGGCGACATCTCCAAATTCGGCCATTCCCGAGACGCCCACTTGTTCTGTTCTTGA
GGACTGCACCAGACCCAGATCTTCGTTGAGCCATACCGAGATTTTCAAAGCCATTGATGTCGTCGAGAAGGACTCTCTCGCCATTGCCGAGAGCTTTACCTCTCTCTTCG
CTTCCCTGCGTTCGACTCTCTCCGAGGTCACCAGCAACTCTATTGATCATATGCATTGCTTCAACGATGCTGCAGGCCGCCTTCAAGAATCTGTGCTTGATGCGGCAACA
AAGGGTAATCGATACATAAATTCTTCCTTGAGATTGAATCAGGAAATGAAAGGCATGGACAATCTAGCTGCTCAGCTAAAGATTTTGAGGAAGAATGTTGATGAACTAGA
CTTGGCTGTGAACAAGCTCCTAAATTTTCCATGA

mRNA sequence

Show/hide mRNA sequence

TAATATTACATAGTTTTTCAAACTTTATGGATTAGAACTAAGGAGACAAATGGAATACTTTATGATCGATTTTCATTATAATTCACTAATTTCCTAAACGAGGCGTAGGT
CGGAAAACATCGAGAAATGGAGCAATCCCCATCGGATTCTTCGTCGAGCATCGAAGCCGGACGTCAGATTCCGGCGACATCTCCAAATTCGGCCATTCCCGAGACGCCCA
CTTGTTCTGTTCTTGAGGACTGCACCAGACCCAGATCTTCGTTGAGCCATACCGAGATTTTCAAAGCCATTGATGTCGTCGAGAAGGACTCTCTCGCCATTGCCGAGAGC
TTTACCTCTCTCTTCGCTTCCCTGCGTTCGACTCTCTCCGAGGTCACCAGCAACTCTATTGATCATATGCATTGCTTCAACGATGCTGCAGGCCGCCTTCAAGAATCTGT
GCTTGATGCGGCAACAAAGGGTAATCGATACATAAATTCTTCCTTGAGATTGAATCAGGAAATGAAAGGCATGGACAATCTAGCTGCTCAGCTAAAGATTTTGAGGAAGA
ATGTTGATGAACTAGACTTGGCTGTGAACAAGCTCCTAAATTTTCCATGAGACTCAGCTTGGTCGTAGTTCTTGCAAGCTCGAGGATTACCGTTTCAGTAGAGAGCGAGA
ACACGGTTCATGTCGAAGAAGTCGCTAGGCAGCTAGAATACAGTACATGAAGCAAAAAAAAAAAAAAAAAAATTCATTGCATAGCTTCCTTCACATTTTACTGTAGGAAG
CATCTCATTGCATGGTTGATGTACTTAT

Protein sequence

Show/hide protein sequence

MEQSPSDSSSSIEAGRQIPATSPNSAIPETPTCSVLEDCTRPRSSLSHTEIFKAIDVVEKDSLAIAESFTSLFASLRSTLSEVTSNSIDHMHCFNDAAGRLQESVLDAAT
KGNRYINSSLRLNQEMKGMDNLAAQLKILRKNVDELDLAVNKLLNFP

CmoCh16G006430 (gene) of Cucurbita moschata (Rifu) v1 genome