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CmoCh16G006460 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G006460
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionHydroxyproline-rich glycoprotein family protein
Genome locationCmo_Chr16:3181973..3188909
RNA-Seq ExpressionCmoCh16G006460
SyntenyCmoCh16G006460
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0051260 - protein homooligomerization (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022136623.1 uncharacterized protein At1g76660-like [Momordica charantia]2.1e-1386.05Show/hide
Query:  LATVDHRFPRATDIQKRRWGSCWSIYWCFGSLKQRKRVVVHAV
        +ATVDHRFPRAT +QKRRWGSCWSIYWCFGSLKQRKR + HAV
Subjt:  LATVDHRFPRATDIQKRRWGSCWSIYWCFGSLKQRKRVVVHAV
XP_022941649.1 uncharacterized protein At1g76660-like isoform X2 [Cucurbita moschata]2.1e-1386.05Show/hide
Query:  LATVDHRFPRATDIQKRRWGSCWSIYWCFGSLKQRKRVVVHAV
        +ATVDHRFPRAT +QKRRWGSCWSIYWCFGSLKQRKR + HAV
Subjt:  LATVDHRFPRATDIQKRRWGSCWSIYWCFGSLKQRKRVVVHAV
XP_023522163.1 uncharacterized protein At1g76660-like [Cucurbita pepo subsp. pepo]2.1e-1386.05Show/hide
Query:  LATVDHRFPRATDIQKRRWGSCWSIYWCFGSLKQRKRVVVHAV
        +ATVDHRFPRAT +QKRRWGSCWSIYWCFGSLKQRKR + HAV
Subjt:  LATVDHRFPRATDIQKRRWGSCWSIYWCFGSLKQRKRVVVHAV
XP_023529207.1 uncharacterized protein At1g76660-like isoform X1 [Cucurbita pepo subsp. pepo]2.1e-1386.05Show/hide
Query:  LATVDHRFPRATDIQKRRWGSCWSIYWCFGSLKQRKRVVVHAV
        +ATVDHRFPRAT +QKRRWGSCWSIYWCFGSLKQRKR + HAV
Subjt:  LATVDHRFPRATDIQKRRWGSCWSIYWCFGSLKQRKRVVVHAV
XP_038884079.1 uncharacterized protein LOC120075005 isoform X2 [Benincasa hispida]2.1e-1386.05Show/hide
Query:  LATVDHRFPRATDIQKRRWGSCWSIYWCFGSLKQRKRVVVHAV
        +ATVDHRFPRAT +QKRRWGSCWSIYWCFGSLKQRKR + HAV
Subjt:  LATVDHRFPRATDIQKRRWGSCWSIYWCFGSLKQRKRVVVHAV
TrEMBL top hitse value%identityAlignment
A0A5D3CYQ2 Mucin-23.2e-1283.72Show/hide
Query:  LATVDHRFPRATDIQKRRWGSCWSIYWCFGSLKQRKRVVVHAV
        +ATVDHRFPRAT +QKRRWGSC SIYWCFGSLKQRKR + HAV
Subjt:  LATVDHRFPRATDIQKRRWGSCWSIYWCFGSLKQRKRVVVHAV
A0A6J1C828 uncharacterized protein At1g76660-like1.0e-1386.05Show/hide
Query:  LATVDHRFPRATDIQKRRWGSCWSIYWCFGSLKQRKRVVVHAV
        +ATVDHRFPRAT +QKRRWGSCWSIYWCFGSLKQRKR + HAV
Subjt:  LATVDHRFPRATDIQKRRWGSCWSIYWCFGSLKQRKRVVVHAV
A0A6J1FP20 uncharacterized protein At1g76660-like isoform X21.0e-1386.05Show/hide
Query:  LATVDHRFPRATDIQKRRWGSCWSIYWCFGSLKQRKRVVVHAV
        +ATVDHRFPRAT +QKRRWGSCWSIYWCFGSLKQRKR + HAV
Subjt:  LATVDHRFPRATDIQKRRWGSCWSIYWCFGSLKQRKRVVVHAV
A0A6J1FSP7 uncharacterized protein At1g76660-like isoform X11.0e-1386.05Show/hide
Query:  LATVDHRFPRATDIQKRRWGSCWSIYWCFGSLKQRKRVVVHAV
        +ATVDHRFPRAT +QKRRWGSCWSIYWCFGSLKQRKR + HAV
Subjt:  LATVDHRFPRATDIQKRRWGSCWSIYWCFGSLKQRKRVVVHAV
A0A6J1IUL0 uncharacterized protein At1g76660-like1.1e-1281.4Show/hide
Query:  LATVDHRFPRATDIQKRRWGSCWSIYWCFGSLKQRKRVVVHAV
        +ATVDHRFPR T +QKRRWGSCWSIYWCFGSL+QRKR + HAV
Subjt:  LATVDHRFPRATDIQKRRWGSCWSIYWCFGSLKQRKRVVVHAV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G63720.1 BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1)9.3e-0439.13Show/hide
Query:  IDGLIKFLATVDHRFPRATDI-QKRRWGSCWSIYWCFGSLKQRKRV
        I+     +A+ D R  +++ I +KR+W + WS+  CFGS +QRKR+
Subjt:  IDGLIKFLATVDHRFPRATDI-QKRRWGSCWSIYWCFGSLKQRKRV
AT4G25620.1 hydroxyproline-rich glycoprotein family protein4.2e-0459.38Show/hide
Query:  TDIQKRRWGSCWSIYWCFGSLKQRKRVVVHAV
        + +QK+R GS WS+YWCFGS K  KR + HAV
Subjt:  TDIQKRRWGSCWSIYWCFGSLKQRKRVVVHAV
AT5G52430.1 hydroxyproline-rich glycoprotein family protein2.4e-0462.5Show/hide
Query:  QKRRWGSCWSIYWCFGSLKQRKRV
        QK RWG CWS+Y CFG+ K  KR+
Subjt:  QKRRWGSCWSIYWCFGSLKQRKRV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGTTTTGATAGATGGCCTTATAAAGTTTTTGGCCACCGTCGATCATCGTTTTCCTCGGGCTACTGATATCCAGAAAAGGAGATGGGGTAGCTGTTGGAGTATTTA
TTGGTGCTTTGGATCTCTCAAACAGAGGAAAAGAGTTGTTGTGCACGCTGTGTGTTGGTACCAGAACCTGGTCCTCCTTCAGCTGAGGCTCATGAAGAAGATTCATTGCA
CTCACCCGATATTGAGCTTCCACTTGCTGCACCCCTCCCTCTTCCCCTGTATCCTTCCTTCAATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGGTTTTGATAGATGGCCTTATAAAGTTTTTGGCCACCGTCGATCATCGTTTTCCTCGGGCTACTGATATCCAGAAAAGGAGATGGGGTAGCTGTTGGAGTATTTA
TTGGTGCTTTGGATCTCTCAAACAGAGGAAAAGAGTTGTTGTGCACGCTGTGTGTTGGTACCAGAACCTGGTCCTCCTTCAGCTGAGGCTCATGAAGAAGATTCATTGCA
CTCACCCGATATTGAGCTTCCACTTGCTGCACCCCTCCCTCTTCCCCTGTATCCTTCCTTCAATCTGA
Protein sequenceShow/hide protein sequence
MQVLIDGLIKFLATVDHRFPRATDIQKRRWGSCWSIYWCFGSLKQRKRVVVHAVCWYQNLVLLQLRLMKKIHCTHPILSFHLLHPSLFPCILPSI