CuGenDBv2

Gene ID	CmoCh16G006660
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Reverse transcriptase
Genome location	Cmo_Chr16:3314882..3316003
RNA-Seq Expression	CmoCh16G006660
Synteny	CmoCh16G006660
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022929323.1 uncharacterized protein LOC111435938 isoform X1 [Cucurbita moschata]

1.3e-118

100

Show/hide

Query:  MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST
        MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST
Subjt:  MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST

Query:  TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML
        TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML
Subjt:  TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML

Query:  KGEAHFWWKGARKTITP
        KGEAHFWWKGARKTITP
Subjt:  KGEAHFWWKGARKTITP

XP_022929325.1 uncharacterized protein LOC111435938 isoform X2 [Cucurbita moschata]

1.3e-107

93.09

Show/hide

Query:  MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST
        MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST
Subjt:  MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST

Query:  TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML
        TFTRDVL               QLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML
Subjt:  TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML

Query:  KGEAHFWWKGARKTITP
        KGEAHFWWKGARKTITP
Subjt:  KGEAHFWWKGARKTITP

XP_022929326.1 uncharacterized protein LOC111435938 isoform X3 [Cucurbita moschata]

1.3e-118

100

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Query:  MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST
        MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST
Subjt:  MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST

Query:  TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML
        TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML
Subjt:  TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML

Query:  KGEAHFWWKGARKTITP
        KGEAHFWWKGARKTITP
Subjt:  KGEAHFWWKGARKTITP

XP_022929329.1 uncharacterized protein LOC111435938 isoform X6 [Cucurbita moschata]

1.3e-118

100

Show/hide

Query:  MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST
        MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST
Subjt:  MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST

Query:  TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML
        TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML
Subjt:  TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML

Query:  KGEAHFWWKGARKTITP
        KGEAHFWWKGARKTITP
Subjt:  KGEAHFWWKGARKTITP

XP_022929332.1 uncharacterized protein LOC111435938 isoform X7 [Cucurbita moschata]

1.3e-118

100

Show/hide

Query:  MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST
        MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST
Subjt:  MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST

Query:  TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML
        TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML
Subjt:  TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML

Query:  KGEAHFWWKGARKTITP
        KGEAHFWWKGARKTITP
Subjt:  KGEAHFWWKGARKTITP

TrEMBL top hits

e value

%identity

Alignment

A0A6J1EMH7 uncharacterized protein LOC111435938 isoform X7

6.3e-119

100

Show/hide

Query:  MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST
        MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST
Subjt:  MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST

Query:  TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML
        TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML
Subjt:  TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML

Query:  KGEAHFWWKGARKTITP
        KGEAHFWWKGARKTITP
Subjt:  KGEAHFWWKGARKTITP

A0A6J1EMU0 uncharacterized protein LOC111435938 isoform X3

6.3e-119

100

Show/hide

Query:  MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST
        MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST
Subjt:  MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST

Query:  TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML
        TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML
Subjt:  TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML

Query:  KGEAHFWWKGARKTITP
        KGEAHFWWKGARKTITP
Subjt:  KGEAHFWWKGARKTITP

A0A6J1ENE9 uncharacterized protein LOC111435938 isoform X1

6.3e-119

100

Show/hide

Query:  MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST
        MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST
Subjt:  MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST

Query:  TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML
        TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML
Subjt:  TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML

Query:  KGEAHFWWKGARKTITP
        KGEAHFWWKGARKTITP
Subjt:  KGEAHFWWKGARKTITP

A0A6J1ENF3 uncharacterized protein LOC111435938 isoform X6

6.3e-119

100

Show/hide

Query:  MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST
        MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST
Subjt:  MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST

Query:  TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML
        TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML
Subjt:  TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML

Query:  KGEAHFWWKGARKTITP
        KGEAHFWWKGARKTITP
Subjt:  KGEAHFWWKGARKTITP

A0A6J1EU38 uncharacterized protein LOC111435938 isoform X2

6.5e-108

93.09

Show/hide

Query:  MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST
        MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST
Subjt:  MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPST

Query:  TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML
        TFTRDVL               QLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML
Subjt:  TFTRDVLQVFMRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYML

Query:  KGEAHFWWKGARKTITP
        KGEAHFWWKGARKTITP
Subjt:  KGEAHFWWKGARKTITP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCGCTTAAGAGGAGAGGAGCCTATCTCAGACTTGGTCCTAGGAGGGGCAGGAGAAGGGTCGAAGAGGACCCAACTATTCCTATCCCCGAGGTGGAGCAGCGCCCACC
CCTGGAGGAAACCAGAGAGCTAACCTCAGATGAGGAACAGGCGCCGCCACAGACACCCACACCGAGGAGAGGCCGAAGAAAGACCGAGCTTCGGGCTATTCAAGAGACTG
TTCCTCAGGACCCGGCGCCTAGAGGGACTCCACCAGCGCCAGCACTGATTCCTGAGGAGGTGCCTGCCCAGCCGTCAACGACCTTTACACGGGATGTGTTACAAGTATTC
ATGAGAACCTCTATGGAAAATCAGGCACAATTGACTCAGTTAATGCAGACACTAGTGGCCAATCAGGCTGCAATGCAGGGAACGAGAGATATGGGGATGACGGTAGAGTC
TTGTTATTTTAGGGATTTTCAGTGGTATAACCCGACTTCTTTTAATGGAGACAAGGTGGACCATGCTGCAGCTGAGACCTGGTTGGAGGCTATAGAGGCGATCTTTCTAT
ACATGAACTGTCCACCAGAATATCAAGTCCACTGTGGGACTTACATGCTGAAGGGCGAAGCCCATTTTTGGTGGAAAGGCGCCCGAAAAACTATTACTCCAGGGAACAAA
TCTATCGAGGAATATGATCTCGAGTTTAATAGGCTGACGAGGTTTTGCCCCGAGTATGTCGGCAATGACAAGATGAAGACTGATCGCTTCATCGCCGGTCTCTGGATAGA
GATTCAGGGTCTAGTAGTGGCACAGATATCCTCGGCTTCTTCTGGCTTGTGGTCACAAAATTATACCTTTTTCCAGCTGTTTTTGTTTGATTGCATGACTTCTATAATAC
AGATAAACCAAATTTCAGAACTTCTGCTGAATCCTGTACTAAAGATGGCACTATTGCTAGTAAATGTTTTTTCTTTTCACTTTATGACTTCATCTAGAGCTCCCTTAAAC
AAGTGGAATTTGCTGCCCTCCTGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MALKRRGAYLRLGPRRGRRRVEEDPTIPIPEVEQRPPLEETRELTSDEEQAPPQTPTPRRGRRKTELRAIQETVPQDPAPRGTPPAPALIPEEVPAQPSTTFTRDVLQVF
MRTSMENQAQLTQLMQTLVANQAAMQGTRDMGMTVESCYFRDFQWYNPTSFNGDKVDHAAAETWLEAIEAIFLYMNCPPEYQVHCGTYMLKGEAHFWWKGARKTITPGNK
SIEEYDLEFNRLTRFCPEYVGNDKMKTDRFIAGLWIEIQGLVVAQISSASSGLWSQNYTFFQLFLFDCMTSIIQINQISELLLNPVLKMALLLVNVFSFHFMTSSRAPLN
KWNLLPS

CmoCh16G006660 (gene) of Cucurbita moschata (Rifu) v1 genome