; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh16G006990 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G006990
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein SHI RELATED SEQUENCE 1-like
Genome locationCmo_Chr16:3464046..3465386
RNA-Seq ExpressionCmoCh16G006990
SyntenyCmoCh16G006990
Gene Ontology termsGO:0009734 - auxin-activated signaling pathway (biological process)
GO:0009851 - auxin biosynthetic process (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006510 - Zinc finger, lateral root primordium type 1
IPR006511 - SHORT INTERNODES, C-terminal
IPR007818 - SHI protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577238.1 Protein EXPRESSION OF TERPENOIDS 1, partial [Cucurbita argyrosperma subsp. sororia]3.1e-14198.42Show/hide
Query:  MAGFFPLGGGGGGSSGGEIIHPTDGLLWYKNYESFETEQQQQGGEGFVYSGENSPARSSLVMVRS---GGGKVISCQDCGNQAKKDCVHMRCRTCCKSRG
        MAGFFPLGGGGGGSSGGEIIHPTDGLLWYKNYESFETEQQQQGGEGFVYSGENSPARSSLVMVRS   GGGKVISCQDCGNQAKKDCVHMRCRTCCKSRG
Subjt:  MAGFFPLGGGGGGSSGGEIIHPTDGLLWYKNYESFETEQQQQGGEGFVYSGENSPARSSLVMVRS---GGGKVISCQDCGNQAKKDCVHMRCRTCCKSRG

Query:  FLCETHVKSTWVPASKRRERLIRTAGGDSKRPRDTHAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQH
        FLCETHVKSTWVPASKRRERLIRTAGGDSKRPRDTHAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQ H
Subjt:  FLCETHVKSTWVPASKRRERLIRTAGGDSKRPRDTHAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQH

Query:  HHHNPPISASPDGGALLITTAESAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS
        HHHNPPISASPDGGALLITTAESAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS
Subjt:  HHHNPPISASPDGGALLITTAESAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS

KAG7015328.1 Protein SHI RELATED SEQUENCE 5, partial [Cucurbita argyrosperma subsp. argyrosperma]2.9e-13193.7Show/hide
Query:  MAGFFPLGGGGGGSSGGEIIHPTDGLLWYKNYESFETEQQQQGGEGFVYSGENSPARSSLVMVRS---GGGKVISCQDCGNQAKKDCVHMRCRTCCKSRG
        MAGFFPLGGGGGGSSGGEIIHPTDGLLWYKNYESFETEQQQQGGEGFVYSGENSPARSSLVMVRS   GGGKVISCQDCGNQAKKDCVHMRCRTCCKSRG
Subjt:  MAGFFPLGGGGGGSSGGEIIHPTDGLLWYKNYESFETEQQQQGGEGFVYSGENSPARSSLVMVRS---GGGKVISCQDCGNQAKKDCVHMRCRTCCKSRG

Query:  FLCETHVKSTWVPASKRRERLIRTAGGDSKRPRDTHAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQ-Q
        FLCETHVKSTWVPASKRRERLIRTAGGDSKRPRDTHAASSGFEIGNFPAEVNSTAVFRC        P  TDQYAYQTAV+IGGHIFKGILYDHGPDQ  
Subjt:  FLCETHVKSTWVPASKRRERLIRTAGGDSKRPRDTHAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQ-Q

Query:  HHHHNPPISASPDGGALLITTAESAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS
        HHHHNPPISASPDGGALLITTAESAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS
Subjt:  HHHHNPPISASPDGGALLITTAESAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS

XP_022929442.1 protein SHI RELATED SEQUENCE 3-like [Cucurbita moschata]1.9e-143100Show/hide
Query:  MAGFFPLGGGGGGSSGGEIIHPTDGLLWYKNYESFETEQQQQGGEGFVYSGENSPARSSLVMVRSGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLC
        MAGFFPLGGGGGGSSGGEIIHPTDGLLWYKNYESFETEQQQQGGEGFVYSGENSPARSSLVMVRSGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLC
Subjt:  MAGFFPLGGGGGGSSGGEIIHPTDGLLWYKNYESFETEQQQQGGEGFVYSGENSPARSSLVMVRSGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLC

Query:  ETHVKSTWVPASKRRERLIRTAGGDSKRPRDTHAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHHHH
        ETHVKSTWVPASKRRERLIRTAGGDSKRPRDTHAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHHHH
Subjt:  ETHVKSTWVPASKRRERLIRTAGGDSKRPRDTHAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHHHH

Query:  NPPISASPDGGALLITTAESAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS
        NPPISASPDGGALLITTAESAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS
Subjt:  NPPISASPDGGALLITTAESAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS

XP_022984770.1 protein SHI RELATED SEQUENCE 1-like [Cucurbita maxima]1.1e-13393.7Show/hide
Query:  MAGFFPLGGGGGGSSGGEIIHPTDGLLWYKNYESFETEQQQQGGEGFVYSGENSPARSSLVMVRS----GGGKVISCQDCGNQAKKDCVHMRCRTCCKSR
        MAGFFPLGGGGGGSSGGEIIHPTDGLLWYKNYESFETEQQQQGGE F YSGENSPARSSLVMVRS    GGGKVISCQDCGNQAKKDCVHMRCRTCCKSR
Subjt:  MAGFFPLGGGGGGSSGGEIIHPTDGLLWYKNYESFETEQQQQGGEGFVYSGENSPARSSLVMVRS----GGGKVISCQDCGNQAKKDCVHMRCRTCCKSR

Query:  GFLCETHVKSTWVPASKRRERLIRTAGGDSKRPRDTHAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQ
        GFLCETHVKSTWVPASKRRERLI T GGDSKRPRDTHA SSGFEIGNFPAE+NSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGIL+DHGPDQQ
Subjt:  GFLCETHVKSTWVPASKRRERLIRTAGGDSKRPRDTHAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQ

Query:  HHHHNPPISASPDGGALLITTAESAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS
         HHHNPPISASPDGGALLITTA+SAA LDPPPSYPAPL+SYI AGTQFFQPPTS
Subjt:  HHHHNPPISASPDGGALLITTAESAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS

XP_023553114.1 protein SHI RELATED SEQUENCE 1-like [Cucurbita pepo subsp. pepo]4.0e-13395.26Show/hide
Query:  MAGFFPLGGGGGGSSGGEIIHPTDGLLWYKNYESFETEQQQQGGEGFVYSGENSPARSSLVMVRS---GGGKVISCQDCGNQAKKDCVHMRCRTCCKSRG
        MAGFFPLGGGGGGSSGGEIIHPTDGLLWYKNYESFETEQQQQGGEGFVYSGENSPARSSLVMVRS   GGGKVISCQDCGNQAKKDCVHMRCRTCCKSRG
Subjt:  MAGFFPLGGGGGGSSGGEIIHPTDGLLWYKNYESFETEQQQQGGEGFVYSGENSPARSSLVMVRS---GGGKVISCQDCGNQAKKDCVHMRCRTCCKSRG

Query:  FLCETHVKSTWVPASKRRERLIRTAGGDSKRPRDTHAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQH
        FLCETHVKSTWVPASKRRERLIRT GGDSKRPRDTHAASSGFEIGNFP EVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQ 
Subjt:  FLCETHVKSTWVPASKRRERLIRTAGGDSKRPRDTHAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQH

Query:  HHHNPPISASPDGGALLITTAESAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS
            PPISASPDGGALLITTAESAA LDPPPSYPAPL SYIPAGTQFFQPPTS
Subjt:  HHHNPPISASPDGGALLITTAESAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS

TrEMBL top hitse value%identityAlignment
A0A0A0KUG2 Uncharacterized protein1.2e-8565.48Show/hide
Query:  MAGFFPLGGGGGG-----------SSGGEIIHP-TDGLLWYKNYESFET----EQQQ-------QGGEGFVYSGENSPARSSLVMVRS------GGGKVI
        MAGFFPL GGG G           ++GGEIIHP T+GL WYKNYE  ET    EQQQ       QGGEGFVYSG+ SPARSSLVMVRS      GGG V 
Subjt:  MAGFFPLGGGGGG-----------SSGGEIIHP-TDGLLWYKNYESFET----EQQQ-------QGGEGFVYSGENSPARSSLVMVRS------GGGKVI

Query:  SCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTAGGDSKRPRDT--HAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTD
        SCQDCGNQAKKDCVHMRCRTCCKSRGF CETHVKSTWVPASKRR+R +R+ G +SKRP+DT  H  SSG ++GNFP EV + AVFRCVRMT+LDE    D
Subjt:  SCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTAGGDSKRPRDT--HAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTD

Query:  QYAYQTAVNIGGHIFKGILYDHGPDQQHHHHNPPISASPDGGALLITTAESAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS
        QYAYQTAVNIGG IFKGILYDHGP+Q      PP S+S            SAA LDP P YP PL++YI AGTQFF PP+S
Subjt:  QYAYQTAVNIGGHIFKGILYDHGPDQQHHHHNPPISASPDGGALLITTAESAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS

A0A6J1EMT4 protein SHI RELATED SEQUENCE 3-like9.3e-144100Show/hide
Query:  MAGFFPLGGGGGGSSGGEIIHPTDGLLWYKNYESFETEQQQQGGEGFVYSGENSPARSSLVMVRSGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLC
        MAGFFPLGGGGGGSSGGEIIHPTDGLLWYKNYESFETEQQQQGGEGFVYSGENSPARSSLVMVRSGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLC
Subjt:  MAGFFPLGGGGGGSSGGEIIHPTDGLLWYKNYESFETEQQQQGGEGFVYSGENSPARSSLVMVRSGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLC

Query:  ETHVKSTWVPASKRRERLIRTAGGDSKRPRDTHAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHHHH
        ETHVKSTWVPASKRRERLIRTAGGDSKRPRDTHAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHHHH
Subjt:  ETHVKSTWVPASKRRERLIRTAGGDSKRPRDTHAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHHHH

Query:  NPPISASPDGGALLITTAESAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS
        NPPISASPDGGALLITTAESAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS
Subjt:  NPPISASPDGGALLITTAESAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS

A0A6J1FUH1 protein SHORT INTERNODES-like5.4e-9169.78Show/hide
Query:  MAGFFPLGGGGGGS--SGGEIIHPTDGLLWYKNYESF----ETEQQQQGGEGFVYSGENSPARSSLVMVRS---GGGKVISCQDCGNQAKKDCVHMRCRT
        MAGFFPLGGG   +          TDGL WY+NYES     + + QQQ GEGFVYSG+ SP RSSLVM+RS   GGG+VISCQDCGNQAKKDC+HMRCRT
Subjt:  MAGFFPLGGGGGGS--SGGEIIHPTDGLLWYKNYESF----ETEQQQQGGEGFVYSGENSPARSSLVMVRS---GGGKVISCQDCGNQAKKDCVHMRCRT

Query:  CCKSRGFLCETHVKSTWVPASKRRERLIRTAGGDSKRPRDTHAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDH
        CCKSRGF CETHVKSTWVPASKRRER +R+ G + KRPRD  AASSG E+ NFP EV+STAVFRCVRMTTLDE    DQ+AYQTAVNIGGH FKGILYDH
Subjt:  CCKSRGFLCETHVKSTWVPASKRRERLIRTAGGDSKRPRDTHAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDH

Query:  GPDQQHH-HHNPPISASPDGGALLITTAE--------SAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS
        GP+QQ      PP SASPDGGALLIT           SAA LDPPP YPAPLN+Y+ AGTQFF PPTS
Subjt:  GPDQQHH-HHNPPISASPDGGALLITTAE--------SAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS

A0A6J1J480 protein SHI RELATED SEQUENCE 1-like1.2e-9371.32Show/hide
Query:  MAGFFPLGGGGGGSSGGEIIHPTDGLLWYKNYESF----ETEQQQQGGEGFVYSGENSPARSSLVMVRS---GGGKVISCQDCGNQAKKDCVHMRCRTCC
        MAGFFPLGGG   +        TDGL WY+NYES     + + QQQ GEGFVYSG+ SP RSSLVM+RS   GGG+VISCQDCGNQAKKDC+HMRCRTCC
Subjt:  MAGFFPLGGGGGGSSGGEIIHPTDGLLWYKNYESF----ETEQQQQGGEGFVYSGENSPARSSLVMVRS---GGGKVISCQDCGNQAKKDCVHMRCRTCC

Query:  KSRGFLCETHVKSTWVPASKRRERLIRTAGGDSKRPRDTHAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGP
        KSRGF CETHVKSTWVPASKRRER +R+   + KRPRD  AASSG E+GNFP EV+STAVFRCVRMTTLDE    DQ+AYQTAVNIGGH FKGILYDHGP
Subjt:  KSRGFLCETHVKSTWVPASKRRERLIRTAGGDSKRPRDTHAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGP

Query:  DQQHHHHNPPISASPDGGALLI----TTAE----SAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS
        +QQ     PP SASPDGGALLI    TT E    SAA LDPPP YPAPLN+Y+ AGTQFF PPTS
Subjt:  DQQHHHHNPPISASPDGGALLI----TTAE----SAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS

A0A6J1J673 protein SHI RELATED SEQUENCE 1-like5.1e-13493.7Show/hide
Query:  MAGFFPLGGGGGGSSGGEIIHPTDGLLWYKNYESFETEQQQQGGEGFVYSGENSPARSSLVMVRS----GGGKVISCQDCGNQAKKDCVHMRCRTCCKSR
        MAGFFPLGGGGGGSSGGEIIHPTDGLLWYKNYESFETEQQQQGGE F YSGENSPARSSLVMVRS    GGGKVISCQDCGNQAKKDCVHMRCRTCCKSR
Subjt:  MAGFFPLGGGGGGSSGGEIIHPTDGLLWYKNYESFETEQQQQGGEGFVYSGENSPARSSLVMVRS----GGGKVISCQDCGNQAKKDCVHMRCRTCCKSR

Query:  GFLCETHVKSTWVPASKRRERLIRTAGGDSKRPRDTHAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQ
        GFLCETHVKSTWVPASKRRERLI T GGDSKRPRDTHA SSGFEIGNFPAE+NSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGIL+DHGPDQQ
Subjt:  GFLCETHVKSTWVPASKRRERLIRTAGGDSKRPRDTHAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQ

Query:  HHHHNPPISASPDGGALLITTAESAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS
         HHHNPPISASPDGGALLITTA+SAA LDPPPSYPAPL+SYI AGTQFFQPPTS
Subjt:  HHHHNPPISASPDGGALLITTAESAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS

SwissProt top hitse value%identityAlignment
K4B6C9 Protein EXPRESSION OF TERPENOIDS 18.3e-4944.98Show/hide
Query:  VYSGENSPARSSLVMVRSGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTA--------------GGDSKRPRDTH
        + +G++  +RS  VM+RSGGG  ISCQDCGNQAKKDC HMRCRTCCKSRGF C+THVKSTWVPA+KRRER  + A                 +KR R+  
Subjt:  VYSGENSPARSSLVMVRSGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTA--------------GGDSKRPRDTH

Query:  AASS-----------GFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQ---------------------QHHHHN
        +ASS           G E+G FP++V ++AVF+C++M+++++    DQ AYQ AV+IGGH+FKGILYD G +                      QHHHHN
Subjt:  AASS-----------GFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQ---------------------QHHHHN

Query:  PPISASPDGGALLITTAESAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS
            A+    +    TA   +    P  +PAPL++++ AGTQFF P  S
Subjt:  PPISASPDGGALLITTAESAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS

Q9FXH7 Protein SHI RELATED SEQUENCE 73.4e-4241.53Show/hide
Query:  ENSPARSS---LVMVRSGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTAGGDSKRPRD-----------------
        ++ P RSS     + R G    ++CQDCGNQAKKDC HMRCRTCCKSRGF C+THVKSTWV A+KRRER  + A   +KR RD                 
Subjt:  ENSPARSS---LVMVRSGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTAGGDSKRPRD-----------------

Query:  ----------------THAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHH-------------HHNP
                         +A+SSG E  + P E++S AVFRC+R++++D+    ++YAYQTAV+IGGH+FKGILYD GP   HH             HH  
Subjt:  ----------------THAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHH-------------HHNP

Query:  PISASPDGGALLITTAESA--APLDPPPSYPA---PLNSYIPAGTQFF
         + ++P        TA +     +DP   Y A   P N+++  GT FF
Subjt:  PISASPDGGALLITTAESA--APLDPPPSYPA---PLNSYIPAGTQFF

Q9LQZ5 Protein SHI RELATED SEQUENCE 52.3e-4646.58Show/hide
Query:  MVRSGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTA----------------------GGDSKRPRDTHA-----
        + R GG   ++CQDCGNQAKKDC HMRCRTCCKSRGF C+THVKSTWVPA+KRRERL + A                      GGD+   +D        
Subjt:  MVRSGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTA----------------------GGDSKRPRDTHA-----

Query:  ----------ASSGFEIG-NFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHHHHNPPISASPDGGALLITTAESAA-
                  ++SG E+  + P EVNS A+FRCVR+++++E      YAYQTAVNIGGHIFKGILYD GP+ Q +HH   ++++     +  T  ++   
Subjt:  ----------ASSGFEIG-NFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHHHHNPPISASPDGGALLITTAESAA-

Query:  ------PLDPPPSYPAPLNSYIPAGTQFFQPPTS
               LDP   YPA LNS+I AGT FF PP S
Subjt:  ------PLDPPPSYPAPLNSYIPAGTQFFQPPTS

Q9SD40 Protein SHI RELATED SEQUENCE 13.5e-4738.07Show/hide
Query:  MAGFFPLGGGGGGSSGG--------EIIHP----TDGLLWYKNYE-----------------------------------SFETEQQQQ--------GGE
        MAGFF L GGGGG  GG           +P    ++  LWY+N                                      F+ +Q QQ         G 
Subjt:  MAGFFPLGGGGGGSSGG--------EIIHP----TDGLLWYKNYE-----------------------------------SFETEQQQQ--------GGE

Query:  G--------FVYSGENSPA----RSSLVMVRS----GGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTA-------
        G        F  SGE S A     ++++M+RS    GG   +SCQDCGNQAKKDC HMRCRTCCKSRGF C THV+STWVPA+KRRER  + A       
Subjt:  G--------FVYSGENSPA----RSSLVMVRS----GGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTA-------

Query:  --GGDS--KRPRDTHAAS------------SGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHHHHNPPISA
           G+S  KR R+   A+            SG E+GNFPAEV+S+AVFRCVR++++++  G +++AYQTAV+IGGHIFKGILYD GP          ++A
Subjt:  --GGDS--KRPRDTHAAS------------SGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHHHHNPPISA

Query:  SPD--------------GGALLITTAESAAP---------------LDPPPSYPAPLNSYIPAGTQFFQPPTS
                          G++ + TA S+ P               +DP   YP P+N+++ AGTQFF  P S
Subjt:  SPD--------------GGALLITTAESAAP---------------LDPPPSYPAPLNSYIPAGTQFFQPPTS

Q9XGX0 Protein SHORT INTERNODES3.1e-4338.17Show/hide
Query:  MAGFFPLGGGGGG--------SSGGEIIHPTDGLLWYKNYES---------------------------FETEQQQQ---------GGEGFVYSGEN--S
        MAGFF LG GGGG        ++       T+  LW +N  S                           F+ +QQQQ          G G   S  +   
Subjt:  MAGFFPLGGGGGG--------SSGGEIIHPTDGLLWYKNYES---------------------------FETEQQQQ---------GGEGFVYSGEN--S

Query:  PARSSLVMVRSGGGK-VISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTAGGDS---------KRPRDTHAA---------
         +  +L+M+RSG G    SCQDCGNQ+KKDC HMRCRTCCKSRG  C THVKSTWVPA+KRRER  + + G           KR R+   A         
Subjt:  PARSSLVMVRSGGGK-VISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTAGGDS---------KRPRDTHAA---------

Query:  -----SSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHHHHNPPISASPDGGAL---LITTAESAAPLDPP
             +SG E+GNFP EV+S+AVFRCVR++++D+    ++YAY+TAV+IGGH+FKG+LYD GP ++         +S  GG+    LIT   SA+   P 
Subjt:  -----SSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHHHHNPPISASPDGGAL---LITTAESAAPLDPP

Query:  PS--------------------YPAPLNSYIPAGTQFF
         S                    YP P+N+++  GT FF
Subjt:  PS--------------------YPAPLNSYIPAGTQFF

Arabidopsis top hitse value%identityAlignment
AT1G19790.1 SHI-related sequence 72.4e-4341.53Show/hide
Query:  ENSPARSS---LVMVRSGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTAGGDSKRPRD-----------------
        ++ P RSS     + R G    ++CQDCGNQAKKDC HMRCRTCCKSRGF C+THVKSTWV A+KRRER  + A   +KR RD                 
Subjt:  ENSPARSS---LVMVRSGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTAGGDSKRPRD-----------------

Query:  ----------------THAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHH-------------HHNP
                         +A+SSG E  + P E++S AVFRC+R++++D+    ++YAYQTAV+IGGH+FKGILYD GP   HH             HH  
Subjt:  ----------------THAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHH-------------HHNP

Query:  PISASPDGGALLITTAESA--APLDPPPSYPA---PLNSYIPAGTQFF
         + ++P        TA +     +DP   Y A   P N+++  GT FF
Subjt:  PISASPDGGALLITTAESA--APLDPPPSYPA---PLNSYIPAGTQFF

AT1G19790.2 SHI-related sequence 72.4e-4341.53Show/hide
Query:  ENSPARSS---LVMVRSGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTAGGDSKRPRD-----------------
        ++ P RSS     + R G    ++CQDCGNQAKKDC HMRCRTCCKSRGF C+THVKSTWV A+KRRER  + A   +KR RD                 
Subjt:  ENSPARSS---LVMVRSGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTAGGDSKRPRD-----------------

Query:  ----------------THAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHH-------------HHNP
                         +A+SSG E  + P E++S AVFRC+R++++D+    ++YAYQTAV+IGGH+FKGILYD GP   HH             HH  
Subjt:  ----------------THAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHH-------------HHNP

Query:  PISASPDGGALLITTAESA--APLDPPPSYPA---PLNSYIPAGTQFF
         + ++P        TA +     +DP   Y A   P N+++  GT FF
Subjt:  PISASPDGGALLITTAESA--APLDPPPSYPA---PLNSYIPAGTQFF

AT1G75520.1 SHI-related sequence 51.6e-4746.58Show/hide
Query:  MVRSGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTA----------------------GGDSKRPRDTHA-----
        + R GG   ++CQDCGNQAKKDC HMRCRTCCKSRGF C+THVKSTWVPA+KRRERL + A                      GGD+   +D        
Subjt:  MVRSGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTA----------------------GGDSKRPRDTHA-----

Query:  ----------ASSGFEIG-NFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHHHHNPPISASPDGGALLITTAESAA-
                  ++SG E+  + P EVNS A+FRCVR+++++E      YAYQTAVNIGGHIFKGILYD GP+ Q +HH   ++++     +  T  ++   
Subjt:  ----------ASSGFEIG-NFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHHHHNPPISASPDGGALLITTAESAA-

Query:  ------PLDPPPSYPAPLNSYIPAGTQFFQPPTS
               LDP   YPA LNS+I AGT FF PP S
Subjt:  ------PLDPPPSYPAPLNSYIPAGTQFFQPPTS

AT3G51060.1 Lateral root primordium (LRP) protein-related2.5e-4838.07Show/hide
Query:  MAGFFPLGGGGGGSSGG--------EIIHP----TDGLLWYKNYE-----------------------------------SFETEQQQQ--------GGE
        MAGFF L GGGGG  GG           +P    ++  LWY+N                                      F+ +Q QQ         G 
Subjt:  MAGFFPLGGGGGGSSGG--------EIIHP----TDGLLWYKNYE-----------------------------------SFETEQQQQ--------GGE

Query:  G--------FVYSGENSPA----RSSLVMVRS----GGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTA-------
        G        F  SGE S A     ++++M+RS    GG   +SCQDCGNQAKKDC HMRCRTCCKSRGF C THV+STWVPA+KRRER  + A       
Subjt:  G--------FVYSGENSPA----RSSLVMVRS----GGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTA-------

Query:  --GGDS--KRPRDTHAAS------------SGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHHHHNPPISA
           G+S  KR R+   A+            SG E+GNFPAEV+S+AVFRCVR++++++  G +++AYQTAV+IGGHIFKGILYD GP          ++A
Subjt:  --GGDS--KRPRDTHAAS------------SGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHHHHNPPISA

Query:  SPD--------------GGALLITTAESAAP---------------LDPPPSYPAPLNSYIPAGTQFFQPPTS
                          G++ + TA S+ P               +DP   YP P+N+++ AGTQFF  P S
Subjt:  SPD--------------GGALLITTAESAAP---------------LDPPPSYPAPLNSYIPAGTQFFQPPTS

AT5G66350.1 Lateral root primordium (LRP) protein-related2.2e-4438.17Show/hide
Query:  MAGFFPLGGGGGG--------SSGGEIIHPTDGLLWYKNYES---------------------------FETEQQQQ---------GGEGFVYSGEN--S
        MAGFF LG GGGG        ++       T+  LW +N  S                           F+ +QQQQ          G G   S  +   
Subjt:  MAGFFPLGGGGGG--------SSGGEIIHPTDGLLWYKNYES---------------------------FETEQQQQ---------GGEGFVYSGEN--S

Query:  PARSSLVMVRSGGGK-VISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTAGGDS---------KRPRDTHAA---------
         +  +L+M+RSG G    SCQDCGNQ+KKDC HMRCRTCCKSRG  C THVKSTWVPA+KRRER  + + G           KR R+   A         
Subjt:  PARSSLVMVRSGGGK-VISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTAGGDS---------KRPRDTHAA---------

Query:  -----SSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHHHHNPPISASPDGGAL---LITTAESAAPLDPP
             +SG E+GNFP EV+S+AVFRCVR++++D+    ++YAY+TAV+IGGH+FKG+LYD GP ++         +S  GG+    LIT   SA+   P 
Subjt:  -----SSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHHHHNPPISASPDGGAL---LITTAESAAPLDPP

Query:  PS--------------------YPAPLNSYIPAGTQFF
         S                    YP P+N+++  GT FF
Subjt:  PS--------------------YPAPLNSYIPAGTQFF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGGTTTTTTCCCACTAGGCGGCGGAGGCGGCGGCAGCAGCGGCGGTGAGATTATTCATCCAACCGACGGATTACTTTGGTACAAGAATTATGAGAGCTTCGAAAC
AGAACAACAGCAACAAGGTGGAGAAGGGTTTGTTTACTCCGGCGAAAATTCGCCGGCGAGATCGTCGCTGGTGATGGTGAGATCCGGCGGAGGGAAGGTTATTAGCTGCC
AAGATTGTGGGAATCAAGCGAAAAAAGATTGCGTTCATATGCGATGTAGAACATGTTGTAAAAGCCGTGGGTTTTTGTGTGAAACCCACGTTAAAAGTACATGGGTACCA
GCCTCCAAACGCCGTGAGCGGCTGATCCGTACTGCCGGCGGTGACTCCAAACGCCCTAGAGACACCCACGCCGCTTCTTCAGGGTTTGAAATAGGGAATTTCCCGGCGGA
AGTAAACTCCACGGCGGTGTTCCGATGCGTACGGATGACAACATTAGACGAACCCACCGGCACCGATCAATATGCTTATCAAACCGCCGTCAACATCGGTGGCCATATCT
TCAAGGGCATTCTTTACGACCACGGCCCTGATCAACAACACCACCACCACAACCCACCCATCTCCGCCTCCCCGGACGGCGGAGCCCTCCTCATCACCACCGCCGAGTCC
GCCGCACCGCTGGATCCTCCGCCGTCATACCCAGCTCCACTCAACAGCTACATCCCCGCCGGTACGCAATTTTTTCAGCCCCCGACATCTTAG
mRNA sequenceShow/hide mRNA sequence
GGGTAATCAATCATCTCTGCAACAAAATCAGAACATACGAAGAAGAAAGCGTTTTGTTCTTTATTTAAGTTAGCGCCACCGTTCCCCATGGCGGCGTTGCAGGCATAATC
TCTCCGGTGGAATTATGGCCGGTTTTTTCCCACTAGGCGGCGGAGGCGGCGGCAGCAGCGGCGGTGAGATTATTCATCCAACCGACGGATTACTTTGGTACAAGAATTAT
GAGAGCTTCGAAACAGAACAACAGCAACAAGGTGGAGAAGGGTTTGTTTACTCCGGCGAAAATTCGCCGGCGAGATCGTCGCTGGTGATGGTGAGATCCGGCGGAGGGAA
GGTTATTAGCTGCCAAGATTGTGGGAATCAAGCGAAAAAAGATTGCGTTCATATGCGATGTAGAACATGTTGTAAAAGCCGTGGGTTTTTGTGTGAAACCCACGTTAAAA
GTACATGGGTACCAGCCTCCAAACGCCGTGAGCGGCTGATCCGTACTGCCGGCGGTGACTCCAAACGCCCTAGAGACACCCACGCCGCTTCTTCAGGGTTTGAAATAGGG
AATTTCCCGGCGGAAGTAAACTCCACGGCGGTGTTCCGATGCGTACGGATGACAACATTAGACGAACCCACCGGCACCGATCAATATGCTTATCAAACCGCCGTCAACAT
CGGTGGCCATATCTTCAAGGGCATTCTTTACGACCACGGCCCTGATCAACAACACCACCACCACAACCCACCCATCTCCGCCTCCCCGGACGGCGGAGCCCTCCTCATCA
CCACCGCCGAGTCCGCCGCACCGCTGGATCCTCCGCCGTCATACCCAGCTCCACTCAACAGCTACATCCCCGCCGGTACGCAATTTTTTCAGCCCCCGACATCTTAGCCG
ACGGTTTTCCGTTAGGGCATTGTGATTAAAAGAGAAATAGTGGAAATTGCAGGCAAAGTATATAATTTTTCATGAATAAATTTAAAAAAAACTGTAATTTTTATTTTATT
TTTTGCATTAATTTGCCGCCATTGTTGGAACTTGGTGTCCTGCTTCCCCGTACGGTCGCCGGCGTTCGAATTTCTACTTAATTCGCCGATTTAACCCTAACC
Protein sequenceShow/hide protein sequence
MAGFFPLGGGGGGSSGGEIIHPTDGLLWYKNYESFETEQQQQGGEGFVYSGENSPARSSLVMVRSGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVP
ASKRRERLIRTAGGDSKRPRDTHAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHHHHNPPISASPDGGALLITTAES
AAPLDPPPSYPAPLNSYIPAGTQFFQPPTS