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CmoCh16G007600 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G007600
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTetratricopeptide-like helical
Genome locationCmo_Chr16:3816533..3816779
RNA-Seq ExpressionCmoCh16G007600
SyntenyCmoCh16G007600
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577295.1 hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia]6.1e-1374.07Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMANDVPPHLLVEEDNDNDDETAITS
        MSVSLEALAMAGI SNEWAMDA+EWER+E+ NDVPPHLL +ED+D+D+ T+  S
Subjt:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMANDVPPHLLVEEDNDNDDETAITS

KAG6600647.1 hypothetical protein SDJN03_05880, partial [Cucurbita argyrosperma subsp. sororia]1.7e-1075Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMANDVPPHLLVEEDNDNDD
        MSVSLEALAMAGIDSNE AMDA+EWER+EM  ++PPHLL +EDN+ D+
Subjt:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMANDVPPHLLVEEDNDNDD

KAG7015382.1 hypothetical protein SDJN02_23017, partial [Cucurbita argyrosperma subsp. argyrosperma]6.7e-2096.3Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMANDVPPHLLVEEDNDNDDETAITS
        MSVSLEALAMAGIDSNEWAMDAKEWERDEM NDVPPHLLVEEDNDNDDETAIT+
Subjt:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMANDVPPHLLVEEDNDNDDETAITS

KAG7015383.1 hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma]6.1e-1374.07Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMANDVPPHLLVEEDNDNDDETAITS
        MSVSLEALAMAGI SNEWAMDA+EWER+E+ NDVPPHLL +ED+D+D+ T+  S
Subjt:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMANDVPPHLLVEEDNDNDDETAITS

XP_022943015.1 uncharacterized protein LOC111447880 [Cucurbita moschata]4.0e-1277.08Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMANDVPPHLLVEEDNDNDD
        MSVSLEALAMAGIDSNEWAMDA+EWER+EM  D+PPHLL +ED++ D+
Subjt:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMANDVPPHLLVEEDNDNDD

TrEMBL top hitse value%identityAlignment
A0A0A0KU90 Uncharacterized protein6.4e-0868Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAKEWERD--EMAND--VPPHLLVEEDNDN
        M VSLEALAMAGIDSNEWAMDA+EW+ +  +M ND  +PPHLL +ED +N
Subjt:  MSVSLEALAMAGIDSNEWAMDAKEWERD--EMAND--VPPHLLVEEDNDN

A0A0A0KWE7 Uncharacterized protein1.4e-1071.93Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMANDVPPHLLVEEDNDND-DETAITSAI
        MSVSLEALAMAGIDSNEWAMDA+EWER+E+ + VPPHLL +E++D D DE   TS I
Subjt:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMANDVPPHLLVEEDNDND-DETAITSAI

A0A5A7TS68 Tetratricopeptide-like helical6.8e-1069.64Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMANDVPPHLLVEEDNDNDDETAITSAI
        MSVSLEALAMAGIDSNEW MDA+EWER+E+ + VPPHLL +E++D D E  +TS I
Subjt:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMANDVPPHLLVEEDNDNDDETAITSAI

A0A5D3CZU0 Tetratricopeptide-like helical6.8e-1069.64Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMANDVPPHLLVEEDNDNDDETAITSAI
        MSVSLEALAMAGIDSNEW MDA+EWER+E+ + VPPHLL +E++D D E  +TS I
Subjt:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMANDVPPHLLVEEDNDNDDETAITSAI

A0A6J1FX98 uncharacterized protein LOC1114478801.9e-1277.08Show/hide
Query:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMANDVPPHLLVEEDNDNDD
        MSVSLEALAMAGIDSNEWAMDA+EWER+EM  D+PPHLL +ED++ D+
Subjt:  MSVSLEALAMAGIDSNEWAMDAKEWERDEMANDVPPHLLVEEDNDNDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G22320.1 unknown protein5.0e-0539.06Show/hide
Query:  LEALAMAGIDSNEWAMDAKEWERDEMANDVPPHLLV---------EEDNDNDDETAITSAIPKK
        +EALAMAG+D  EW +  +EWE  E    VP HLL          E+  DNDD+  +   +  K
Subjt:  LEALAMAGIDSNEWAMDAKEWERDEMANDVPPHLLV---------EEDNDNDDETAITSAIPKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCTGGGATTGATTCTAATGAGTGGGCTATGGATGCTAAAGAATGGGAACGAGACGAAATGGCGAACGACGTTCCTCCACA
TTTATTAGTTGAAGAAGACAACGACAACGACGACGAAACCGCTATAACTTCTGCCATTCCAAAAAAAATCATAGAAATCAAAACTTTAAATTGCTTGAGCTTGAGGATCG
AATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCTGGGATTGATTCTAATGAGTGGGCTATGGATGCTAAAGAATGGGAACGAGACGAAATGGCGAACGACGTTCCTCCACA
TTTATTAGTTGAAGAAGACAACGACAACGACGACGAAACCGCTATAACTTCTGCCATTCCAAAAAAAATCATAGAAATCAAAACTTTAAATTGCTTGAGCTTGAGGATCG
AATGA
Protein sequenceShow/hide protein sequence
MSVSLEALAMAGIDSNEWAMDAKEWERDEMANDVPPHLLVEEDNDNDDETAITSAIPKKIIEIKTLNCLSLRIE