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CmoCh16G007610 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G007610
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTetratricopeptide-like helical
Genome locationCmo_Chr16:3819587..3819982
RNA-Seq ExpressionCmoCh16G007610
SyntenyCmoCh16G007610
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044707.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]2.3e-3170.09Show/hide
Query:  MSVSLEALAMAGITSNEWAMDAEEWEQNEIENDVPPHLLADEDDDDDN--VTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNG
        MSVSLEALAMAGI SNEW MDA+EWE+NEI+  VPPHLLADE+DD+D   VTST+SNY F V G F    R D  AD  H   GI  SLSK +EKRASNG
Subjt:  MSVSLEALAMAGITSNEWAMDAEEWEQNEIENDVPPHLLADEDDDDDN--VTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNG

Query:  MSSVRIIVRTILGFLLV
        M+SVRIIVRTILGFL+V
Subjt:  MSSVRIIVRTILGFLLV

KAG6577295.1 hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia]6.7e-6396.95Show/hide
Query:  MSVSLEALAMAGITSNEWAMDAEEWEQNEIENDVPPHLLADEDDDDDNVTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMS
        MSVSLEALAMAGITSNEWAMDAEEWE+NEIENDVPPHLLADEDDDDDNVTSTVSNYSFPVAGFFDSL REDGGA DIHCFWGILCSLSKSLEKRASNGMS
Subjt:  MSVSLEALAMAGITSNEWAMDAEEWEQNEIENDVPPHLLADEDDDDDNVTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMS

Query:  SVRIIVRTILGFLLVKIMKIISAHTSNMIIP
        SVRIIVRTILGFLLVKI+KIISAHTSNMIIP
Subjt:  SVRIIVRTILGFLLVKIMKIISAHTSNMIIP

KAG7015383.1 hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-6498.47Show/hide
Query:  MSVSLEALAMAGITSNEWAMDAEEWEQNEIENDVPPHLLADEDDDDDNVTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMS
        MSVSLEALAMAGITSNEWAMDAEEWE+NEIENDVPPHLLADEDDDDDNVTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMS
Subjt:  MSVSLEALAMAGITSNEWAMDAEEWEQNEIENDVPPHLLADEDDDDDNVTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMS

Query:  SVRIIVRTILGFLLVKIMKIISAHTSNMIIP
        SVRIIVRTILGFLLVKI+KIISAHTSNMIIP
Subjt:  SVRIIVRTILGFLLVKIMKIISAHTSNMIIP

TYK16880.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]1.1e-3368.46Show/hide
Query:  MSVSLEALAMAGITSNEWAMDAEEWEQNEIENDVPPHLLADEDDDDDN--VTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNG
        MSVSLEALAMAGI SNEW MDA+EWE+NEI+  VPPHLLADE+DD+D   VTST+SNY F V G F    R D  AD      GI  SLSK +EKRASNG
Subjt:  MSVSLEALAMAGITSNEWAMDAEEWEQNEIENDVPPHLLADEDDDDDN--VTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNG

Query:  MSSVRIIVRTILGFLLVKIMKIISAHTSNM
        M+SVRIIVRTILGFL+V  MKIISA  S M
Subjt:  MSSVRIIVRTILGFLLVKIMKIISAHTSNM

XP_022943015.1 uncharacterized protein LOC111447880 [Cucurbita moschata]1.3e-2150.79Show/hide
Query:  MSVSLEALAMAGITSNEWAMDAEEWEQNEIENDVPPHLLADEDDDDDNVTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMS
        MSVSLEALAMAGI SNEWAMDAEEWE+NE+E D+PPHLLADEDD++D +++      FP      S  R+D G   + C   I+  L K  EKR  N +S
Subjt:  MSVSLEALAMAGITSNEWAMDAEEWEQNEIENDVPPHLLADEDDDDDNVTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMS

Query:  SVRIIVRTILGFLLVKIMKIISAHTS
        S+ I+   ++GFL+   +KII++  S
Subjt:  SVRIIVRTILGFLLVKIMKIISAHTS

TrEMBL top hitse value%identityAlignment
A0A0A0KU90 Uncharacterized protein1.1e-1049Show/hide
Query:  MSVSLEALAMAGITSNEWAMDAEEWEQN--EIEND--VPPHLLADEDDDDDNVTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRAS
        M VSLEALAMAGI SNEWAMDAEEW+ N  ++END  +PPHLLADED+++      ++     ++G     HR+D G      F      L K +EKRAS
Subjt:  MSVSLEALAMAGITSNEWAMDAEEWEQN--EIEND--VPPHLLADEDDDDDNVTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRAS

A0A0A0KWE7 Uncharacterized protein1.3e-3569.4Show/hide
Query:  MSVSLEALAMAGITSNEWAMDAEEWEQNEIENDVPPHLLADEDDDDDN----VTSTVSNYSFPVAGFFDSLHREDGGAD--DIHCFWGILCSLSKSLEKR
        MSVSLEALAMAGI SNEWAMDAEEWE+NEI+  VPPHLLADE+DD+D      TST+SNY FPV G F+     D  AD    H   GI CSLSK +EKR
Subjt:  MSVSLEALAMAGITSNEWAMDAEEWEQNEIENDVPPHLLADEDDDDDN----VTSTVSNYSFPVAGFFDSLHREDGGAD--DIHCFWGILCSLSKSLEKR

Query:  ASNGMSSVRIIVRTILGFLLVKIMKIISAHTSNM
        ASNGMSSVRIIVRTILGFL+V  MKIISA  S M
Subjt:  ASNGMSSVRIIVRTILGFLLVKIMKIISAHTSNM

A0A5A7TS68 Tetratricopeptide-like helical1.1e-3170.09Show/hide
Query:  MSVSLEALAMAGITSNEWAMDAEEWEQNEIENDVPPHLLADEDDDDDN--VTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNG
        MSVSLEALAMAGI SNEW MDA+EWE+NEI+  VPPHLLADE+DD+D   VTST+SNY F V G F    R D  AD  H   GI  SLSK +EKRASNG
Subjt:  MSVSLEALAMAGITSNEWAMDAEEWEQNEIENDVPPHLLADEDDDDDN--VTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNG

Query:  MSSVRIIVRTILGFLLV
        M+SVRIIVRTILGFL+V
Subjt:  MSSVRIIVRTILGFLLV

A0A5D3CZU0 Tetratricopeptide-like helical5.4e-3468.46Show/hide
Query:  MSVSLEALAMAGITSNEWAMDAEEWEQNEIENDVPPHLLADEDDDDDN--VTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNG
        MSVSLEALAMAGI SNEW MDA+EWE+NEI+  VPPHLLADE+DD+D   VTST+SNY F V G F    R D  AD      GI  SLSK +EKRASNG
Subjt:  MSVSLEALAMAGITSNEWAMDAEEWEQNEIENDVPPHLLADEDDDDDN--VTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNG

Query:  MSSVRIIVRTILGFLLVKIMKIISAHTSNM
        M+SVRIIVRTILGFL+V  MKIISA  S M
Subjt:  MSSVRIIVRTILGFLLVKIMKIISAHTSNM

A0A6J1FX98 uncharacterized protein LOC1114478806.2e-2250.79Show/hide
Query:  MSVSLEALAMAGITSNEWAMDAEEWEQNEIENDVPPHLLADEDDDDDNVTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMS
        MSVSLEALAMAGI SNEWAMDAEEWE+NE+E D+PPHLLADEDD++D +++      FP      S  R+D G   + C   I+  L K  EKR  N +S
Subjt:  MSVSLEALAMAGITSNEWAMDAEEWEQNEIENDVPPHLLADEDDDDDNVTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMS

Query:  SVRIIVRTILGFLLVKIMKIISAHTS
        S+ I+   ++GFL+   +KII++  S
Subjt:  SVRIIVRTILGFLLVKIMKIISAHTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G22320.1 unknown protein9.8e-0445.61Show/hide
Query:  LEALAMAGITSNEWAMDAEEWEQNEIENDVPPHLLAD------------EDDDDDNV
        +EALAMAG+   EW +  EEWE    E+ VP HLLAD            ++DDDD V
Subjt:  LEALAMAGITSNEWAMDAEEWEQNEIENDVPPHLLAD------------EDDDDDNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCGGGGATTACTTCCAATGAGTGGGCTATGGATGCTGAAGAATGGGAACAAAACGAAATCGAAAACGACGTTCCACCGCA
TTTATTAGCCGATGAAGACGACGATGACGATAACGTAACGAGTACTGTCAGCAATTATAGCTTCCCGGTCGCTGGATTCTTCGATAGCTTGCATCGGGAAGATGGCGGAG
CCGATGATATCCATTGCTTCTGGGGGATCTTGTGTAGCTTAAGCAAAAGCTTAGAGAAGAGGGCTTCTAATGGGATGAGTTCAGTGAGAATCATTGTGAGAACTATTTTA
GGGTTTCTACTGGTGAAGATCATGAAGATCATTAGTGCACACACATCCAACATGATTATTCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGTTTCTTTGGAAGCTTTGGCAATGGCGGGGATTACTTCCAATGAGTGGGCTATGGATGCTGAAGAATGGGAACAAAACGAAATCGAAAACGACGTTCCACCGCA
TTTATTAGCCGATGAAGACGACGATGACGATAACGTAACGAGTACTGTCAGCAATTATAGCTTCCCGGTCGCTGGATTCTTCGATAGCTTGCATCGGGAAGATGGCGGAG
CCGATGATATCCATTGCTTCTGGGGGATCTTGTGTAGCTTAAGCAAAAGCTTAGAGAAGAGGGCTTCTAATGGGATGAGTTCAGTGAGAATCATTGTGAGAACTATTTTA
GGGTTTCTACTGGTGAAGATCATGAAGATCATTAGTGCACACACATCCAACATGATTATTCCTTGA
Protein sequenceShow/hide protein sequence
MSVSLEALAMAGITSNEWAMDAEEWEQNEIENDVPPHLLADEDDDDDNVTSTVSNYSFPVAGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTIL
GFLLVKIMKIISAHTSNMIIP