; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh16G007660 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G007660
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description50S ribosomal protein L23
Genome locationCmo_Chr16:3849343..3849864
RNA-Seq ExpressionCmoCh16G007660
SyntenyCmoCh16G007660
Gene Ontology termsGO:0032543 - mitochondrial translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR012678 - Ribosomal protein L23/L15e core domain superfamily
IPR013025 - Ribosomal protein L25/L23


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7015390.1 rplW, partial [Cucurbita argyrosperma subsp. argyrosperma]7.2e-89100Show/hide
Query:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
Subjt:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRS
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRS
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRS

XP_022929525.1 uncharacterized protein LOC111436066 [Cucurbita moschata]5.0e-90100Show/hide
Query:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
Subjt:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR

XP_022985025.1 uncharacterized protein LOC111483116 [Cucurbita maxima]1.0e-8797.69Show/hide
Query:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRN LSISPDVYP
Subjt:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFS+R RRRTGSAETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR

XP_023531609.1 uncharacterized protein LOC111793793 [Cucurbita pepo subsp. pepo]2.4e-8494.22Show/hide
Query:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
Subjt:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKE VG K YKGF++R RRR G AE VEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR

XP_023552749.1 uncharacterized protein LOC111810290 [Cucurbita pepo subsp. pepo]2.6e-8695.95Show/hide
Query:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
Subjt:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSK SIVEEGEAKRHWLHEKEPV FK+YKGF+NR RR+TGSAET+EPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR

TrEMBL top hitse value%identityAlignment
A0A0A0L0J2 Uncharacterized protein3.7e-8391.95Show/hide
Query:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKV+TLNM+GKKKKRGG+LIAKPDYKKAYVTLRNPLSISPD+YP
Subjt:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRT-GSAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAK+HWLHEKEPVG K YKGF++R RRR+ G AETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRT-GSAETVEPSTKFPWSSMRSGR

A0A5D3CZJ7 Nucleotide-binding, alpha-beta plait1.8e-8291.95Show/hide
Query:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVRTLNM+GKKKKRGG+LIAKPDYKKAYVTLRNPLSIS D+YP
Subjt:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRT-GSAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVG K YKGF++R RRR  G AETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRT-GSAETVEPSTKFPWSSMRSGR

A0A6J1EUM4 uncharacterized protein LOC1114360662.4e-90100Show/hide
Query:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
Subjt:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR

A0A6J1FSK6 uncharacterized protein LOC1114480491.3e-8393.64Show/hide
Query:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        M SRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
Subjt:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKE VG K YKGF++R RRR G AE VEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR

A0A6J1JA70 uncharacterized protein LOC1114831165.0e-8897.69Show/hide
Query:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRN LSISPDVYP
Subjt:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFS+R RRRTGSAETVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR

SwissProt top hitse value%identityAlignment
A0KF23 50S ribosomal protein L232.1e-0645.76Show/hide
Query:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR
        I  K    A+K E+K  +  L+  EV+ VRTLNM GK K+ G  +  + D+KKAYVTL+
Subjt:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR

A4ST04 50S ribosomal protein L232.7e-0645.76Show/hide
Query:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR
        I  K    A+K E+K  +  L+  EV+ VRTLNM GK K+ G  +  + D+KKAYVTL+
Subjt:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR

Q0ABH3 50S ribosomal protein L232.7e-0645.76Show/hide
Query:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTL
        E+  K    A K EI++ +E L+  +V  VRT+ M GK+K+ G L   +PD+KKAYVTL
Subjt:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTL

Q0I161 50S ribosomal protein L231.6e-0642.47Show/hide
Query:  TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSI
        TN TE    I  K    A+K+EI   +E L+  +VD VRT+ + GK K+RG  +  + D+KKAYVTL+   S+
Subjt:  TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSI

Q605B4 50S ribosomal protein L231.2e-0641.67Show/hide
Query:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR
        +   +  P+ASK++IK  +E ++G +VD VR LN+ GK K+ G  +  + D+KKAYV L+
Subjt:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR

Arabidopsis top hitse value%identityAlignment
AT4G39880.1 Ribosomal protein L23/L15e family protein8.8e-5364.57Show/hide
Query:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLG RV+HFANLPIKLLMP   TNI E ALKTIPSASKIEIKRVLESLYGF+V+KV TLNMDGKKKKRGGLLIAK DYKKAYVTLR+PLSIS D++P
Subjt:  MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAY-KGFSNRDRRRTGS----AETVEPSTKFPWSSMR
        ++ IEED+++  K S S + EE + K HWL  KE      Y KG   R   R  S          + KFPWS+MR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAY-KGFSNRDRRRTGS----AETVEPSTKFPWSSMR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGCAGACTCGGGAGAAGAGTTATTCACTTCGCTAATCTTCCAATCAAGCTTCTTATGCCAACCTCCTTCACCAACATCACTGAAATTGCTCTCAAAACCATTCC
TTCTGCTTCCAAAATCGAAATCAAGCGCGTCCTTGAGAGCCTCTACGGCTTTGAGGTCGATAAAGTTCGTACTCTCAACATGGACGGGAAGAAAAAGAAGCGCGGAGGGC
TTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTATCAATCTCTCCGGACGTGTATCCGATCCGGATTATAGAGGAGGACAAGAGGAAT
ATGAATAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCCAAGAGGCATTGGCTACATGAGAAGGAGCCTGTTGGATTCAAAGCTTACAAGGGTTTTTCTAATAG
AGACCGCCGACGAACTGGCAGTGCTGAAACTGTTGAACCATCGACTAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGCAGACTCGGGAGAAGAGTTATTCACTTCGCTAATCTTCCAATCAAGCTTCTTATGCCAACCTCCTTCACCAACATCACTGAAATTGCTCTCAAAACCATTCC
TTCTGCTTCCAAAATCGAAATCAAGCGCGTCCTTGAGAGCCTCTACGGCTTTGAGGTCGATAAAGTTCGTACTCTCAACATGGACGGGAAGAAAAAGAAGCGCGGAGGGC
TTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTATCAATCTCTCCGGACGTGTATCCGATCCGGATTATAGAGGAGGACAAGAGGAAT
ATGAATAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCCAAGAGGCATTGGCTACATGAGAAGGAGCCTGTTGGATTCAAAGCTTACAAGGGTTTTTCTAATAG
AGACCGCCGACGAACTGGCAGTGCTGAAACTGTTGAACCATCGACTAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAG
Protein sequenceShow/hide protein sequence
MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRN
MNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR