; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh16G007730 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G007730
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description50S ribosomal protein L29, chloroplastic-like
Genome locationCmo_Chr16:3886200..3889489
RNA-Seq ExpressionCmoCh16G007730
SyntenyCmoCh16G007730
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001854 - Ribosomal protein L29/L35
IPR036049 - Ribosomal protein L29/L35 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577307.1 50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.5e-7598.77Show/hide
Query:  MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFS RVPPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
Subjt:  MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAE
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEEAAE
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAE

XP_022929361.1 50S ribosomal protein L29, chloroplastic-like [Cucurbita moschata]2.4e-78100Show/hide
Query:  MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
Subjt:  MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKSA

XP_022977189.1 50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima]2.7e-6990.85Show/hide
Query:  MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        MMNLSIASPSSV+ P+KFLSSTSKSSFNG QIRFPFS RVPPK A TGGRNS VVMMAKREEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFK
Subjt:  MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKS
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEE AAE++
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKS

XP_022985118.1 50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima]1.6e-7498.15Show/hide
Query:  MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        M+NLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFS RVPPKAAC GGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
Subjt:  MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAE
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAE
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAE

XP_023551880.1 50S ribosomal protein L29, chloroplastic-like [Cucurbita pepo subsp. pepo]1.1e-7397.53Show/hide
Query:  MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        MMNLSIASPSSVAIPAKFLSSTSKSSF+GLQIRFPFS RVPPKAACTGGR SPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
Subjt:  MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAE
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEEAAE
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAE

TrEMBL top hitse value%identityAlignment
A0A5D3CWZ4 50S ribosomal protein L292.6e-6587.95Show/hide
Query:  MMNLSIAS-PSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACT-GGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNE
        M+NLS+AS PS++ IP+KFL+STSKS FNGLQIRFPFS  VPPK A T GGRNS VVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNE
Subjt:  MMNLSIAS-PSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACT-GGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNE

Query:  FKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKS
        FKSSEFRRMRKRI+RMLTVKREREIEEGVGKR+SRKLDRKWKKSIVVRPPPSLKKLREEE AAE++
Subjt:  FKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKS

A0A6J1EMX4 50S ribosomal protein L29, chloroplastic-like1.2e-78100Show/hide
Query:  MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
Subjt:  MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKSA
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKSA
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKSA

A0A6J1FMW5 50S ribosomal protein L29, chloroplastic-like3.8e-6990.24Show/hide
Query:  MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        M+NLSIASPSSV+ P+KFLSSTSKSSFNG QIRFPFS RVPPK A TGGRNS VVMMAKREEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFK
Subjt:  MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKS
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEE AAE++
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKS

A0A6J1IQR3 50S ribosomal protein L29, chloroplastic-like1.3e-6990.85Show/hide
Query:  MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        MMNLSIASPSSV+ P+KFLSSTSKSSFNG QIRFPFS RVPPK A TGGRNS VVMMAKREEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFK
Subjt:  MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKS
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEE AAE++
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKS

A0A6J1JCM6 50S ribosomal protein L29, chloroplastic-like7.9e-7598.15Show/hide
Query:  MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
        M+NLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFS RVPPKAAC GGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK
Subjt:  MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFK

Query:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAE
        SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAE
Subjt:  SSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAE

SwissProt top hitse value%identityAlignment
B8HMR2 50S ribosomal protein L292.4e-0433.33Show/hide
Query:  ELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEE
        ++KD+   +  E+  +++DLK +L  LRLQK+ R E K  +F+ +R ++A+++T++R+R++ +
Subjt:  ELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEE

P82248 50S ribosomal protein L29, chloroplastic3.1e-3659.21Show/hide
Query:  SKSSFNGLQI-------RFPFSCRVPPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARML
        +KSSF+GL++             + PP         S VV+M K+E+ELK++R KT E++NEE++ LKGEL MLRLQ+SAR  FK S+F RMRKR+ARML
Subjt:  SKSSFNGLQI-------RFPFSCRVPPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARML

Query:  TVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREE---EEAAEKS
        TVKREREIE+GVGKRLSRKLD+ WK+SIVVRPPPSLKKL+E+   E  AEK+
Subjt:  TVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREE---EEAAEKS

Q49ZG0 50S ribosomal protein L293.2e-0446.77Show/hide
Query:  KDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEG
        K+IR  TT EI E++   K EL  LR Q +     +++  R +RK IAR+ TV REREIE+G
Subjt:  KDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEG

Q9FJP3 50S ribosomal protein L29, chloroplastic5.2e-4766.07Show/hide
Query:  MMNLSIASPSSVAIPAKFLSS--TSKSSFNGLQIRFPFSCRVPPKAACTGGRNSP-VVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARN
        M++LSIA+P + AI  +  +S  ++ SSF+G++I+   S RVP  A  +     P VVMM+KRE ELK+IR+KTTE++ EEVVDLKGEL MLRLQKSARN
Subjt:  MMNLSIASPSSVAIPAKFLSS--TSKSSFNGLQIRFPFSCRVPPKAACTGGRNSP-VVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARN

Query:  EFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKSA
        EFKSS+FRRM+K++ARMLTVKREREI+EG+ KRLSRKLDR+WKKSIV RPPPSLKKL +EEEAAE++A
Subjt:  EFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKSA

Q9SWI6 50S ribosomal protein L29, chloroplastic2.7e-3557.23Show/hide
Query:  MNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACT---GGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNE
        M+L+ ASP + +IP    +    ++F  +++    + R    A  +     R + +V MAKRE+EL++IRA TTE++ EEVVDLKGEL +LRL++SAR E
Subjt:  MNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACT---GGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNE

Query:  FKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREE
        FK+SEF RMRKRIARMLTVKREREIE+G+ KRLSRKLDRKWK+SIVVRPPPSL+  +EE
Subjt:  FKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREE

Arabidopsis top hitse value%identityAlignment
AT5G65220.1 Ribosomal L29 family protein3.7e-4866.07Show/hide
Query:  MMNLSIASPSSVAIPAKFLSS--TSKSSFNGLQIRFPFSCRVPPKAACTGGRNSP-VVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARN
        M++LSIA+P + AI  +  +S  ++ SSF+G++I+   S RVP  A  +     P VVMM+KRE ELK+IR+KTTE++ EEVVDLKGEL MLRLQKSARN
Subjt:  MMNLSIASPSSVAIPAKFLSS--TSKSSFNGLQIRFPFSCRVPPKAACTGGRNSP-VVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARN

Query:  EFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKSA
        EFKSS+FRRM+K++ARMLTVKREREI+EG+ KRLSRKLDR+WKKSIV RPPPSLKKL +EEEAAE++A
Subjt:  EFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAACCTTTCAATTGCTTCGCCTTCGAGCGTTGCTATACCTGCAAAGTTTCTTAGCTCGACCTCCAAATCATCCTTCAATGGCCTTCAAATCCGTTTCCCATTTTC
GTGTCGCGTTCCTCCTAAAGCAGCATGTACCGGAGGCCGCAATTCGCCGGTGGTAATGATGGCCAAGAGGGAGGAGGAGTTGAAAGATATCAGAGCGAAAACTACTGAGG
AAATAAACGAAGAGGTCGTCGATCTCAAGGGTGAACTTCTTATGCTTCGGCTTCAAAAATCAGCCCGCAATGAGTTTAAGTCTAGCGAATTCCGCCGCATGCGCAAACGG
ATTGCTCGGATGCTAACCGTAAAACGTGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGTTGTCAAGAAAGTTAGATAGAAAGTGGAAGAAAAGTATTGTGGTCAGACC
ACCTCCATCTCTGAAGAAGTTGCGAGAGGAAGAAGAAGCAGCTGAGAAATCTGCTTGA
mRNA sequenceShow/hide mRNA sequence
AATAGAAGGGGAGAGAGCTTATCTTCTTCTTGAATCGTAGCTGACTGAGCGAACTCTACGAACACACTCTGAACATGATGAACCTTTCAATTGCTTCGCCTTCGAGCGTT
GCTATACCTGCAAAGTTTCTTAGCTCGACCTCCAAATCATCCTTCAATGGCCTTCAAATCCGTTTCCCATTTTCGTGTCGCGTTCCTCCTAAAGCAGCATGTACCGGAGG
CCGCAATTCGCCGGTGGTAATGATGGCCAAGAGGGAGGAGGAGTTGAAAGATATCAGAGCGAAAACTACTGAGGAAATAAACGAAGAGGTCGTCGATCTCAAGGGTGAAC
TTCTTATGCTTCGGCTTCAAAAATCAGCCCGCAATGAGTTTAAGTCTAGCGAATTCCGCCGCATGCGCAAACGGATTGCTCGGATGCTAACCGTAAAACGTGAAAGAGAG
ATTGAAGAGGGAGTGGGCAAAAGGTTGTCAAGAAAGTTAGATAGAAAGTGGAAGAAAAGTATTGTGGTCAGACCACCTCCATCTCTGAAGAAGTTGCGAGAGGAAGAAGA
AGCAGCTGAGAAATCTGCTTGATCCAATCAGATACGCTCTCAACCAATATTGTAGCTTTATGAGTGTTTGAAGTTGTTGAAATTGCTATTTAAACAACGTTTTATAAGAA
GATGAAAATTCTGATCATGAACTTAGCTTGTGCACAAATGGAATAGAGATTTCAAGGGGATCGTGTTGCATTTGTTAGATTGAATGGCACGATGACCTATATGGGTCACG
ACCTCATGTATTTATAGATGTGTATAATGAAGATTATATTCCAAATCTATGATTTGATAACAAACCATGAAATCATAGATTAGGTAACAAACCCTTCAAATCATAAATTT
GGTAGTAAATCCTAGA
Protein sequenceShow/hide protein sequence
MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKR
IARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKSA