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CmoCh16G007840 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G007840
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionclassical arabinogalactan protein 9-like
Genome locationCmo_Chr16:3972779..3973258
RNA-Seq ExpressionCmoCh16G007840
SyntenyCmoCh16G007840
Gene Ontology termsNA
InterPro domainsIPR044959 - Classical arabinogalactan protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK14854.1 vegetative cell wall protein gp1 [Cucumis melo var. makuwa]5.9e-3774.12Show/hide
Query:  MKMGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVA--PATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTP-------
        MKMGFQF+M LALFATS MAQAPGAAPAQPP+TPAVPPPSTPPP  +  PATPPP ATPPPATPPPA  PP S PPSSPP+QPPASPPTSP P       
Subjt:  MKMGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVA--PATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTP-------

Query:  --PPKEGPASSPTPSSASPPSPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA
          PPKEGP S PT   +SPPSPP EG  P++SPGP+ PPPPP  NGAA+VSRG+MVGGAVAGA LAM+FA
Subjt:  --PPKEGPASSPTPSSASPPSPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA

XP_022929543.1 classical arabinogalactan protein 9-like [Cucurbita moschata]1.5e-61100Show/hide
Query:  MKMGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAPATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTPPPKEGPASS
        MKMGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAPATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTPPPKEGPASS
Subjt:  MKMGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAPATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTPPPKEGPASS

Query:  PTPSSASPPSPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA
        PTPSSASPPSPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA
Subjt:  PTPSSASPPSPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA

XP_022984561.1 classical arabinogalactan protein 4-like [Cucurbita maxima]3.8e-6098.74Show/hide
Query:  MKMGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAPATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTPPPKEGPASS
        MKMGFQF+MVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAPATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTPPPKEGPASS
Subjt:  MKMGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAPATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTPPPKEGPASS

Query:  PTPSSASPPSPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA
        PTPSSASPPSPPSEGM PSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA
Subjt:  PTPSSASPPSPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA

XP_023545089.1 classical arabinogalactan protein 4-like [Cucurbita pepo subsp. pepo]1.0e-3672.41Show/hide
Query:  MGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVA--PATPPPAATPPPATPPPA---------VTPPPSQPPSSPPTQPPASPPT----
        MG QFLM+LA  ATSSMAQAPGAAPAQPPTTPAVPPPSTPPP  +  PATPPPAATPPPATPPPA          TPP + PPSSPP+QPPA+PPT    
Subjt:  MGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVA--PATPPPAATPPPATPPPA---------VTPPPSQPPSSPPTQPPASPPT----

Query:  --SPTPPPKEGPASSPTPSSASPPSPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA
          SPTPPPKEGPASSP+PS+ASPPSPP+EG  PS +PGPN+PPPP  DNGA ++SR  MVG AV+G LLAMVFA
Subjt:  --SPTPPPKEGPASSPTPSSASPPSPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA

XP_023552891.1 classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo]1.4e-5498.01Show/hide
Query:  MVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAPATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTPPPKEGPASSPTPSSASP
        MVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAPATPPPAATPPPAT PPA+TPPP+QPPSSPPTQPPASPPTSPTPPPKEGPASSPTPSSASP
Subjt:  MVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAPATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTPPPKEGPASSPTPSSASP

Query:  PSPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA
        PSPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA
Subjt:  PSPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA

TrEMBL top hitse value%identityAlignment
A0A0A0L0L1 Uncharacterized protein4.8e-3774.71Show/hide
Query:  MKMGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVA--PATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTP-------
        MKMGFQF+M LALFATS MAQAPGAAPAQPP+TPAVPPPSTPPP  +  PATPPP ATPPPATPPPA  PP S PPSSPP+QPPASPPTSP P       
Subjt:  MKMGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVA--PATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTP-------

Query:  --PPKEGPASSPTPSSASPPSPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA
          PPKEGP S PT   +SPPSPP EG  P+ SPGP+ PPPPP  NGAA+VSRG+MVGGAVAGA LAMVFA
Subjt:  --PPKEGPASSPTPSSASPPSPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA

A0A5A7UE17 Classical arabinogalactan protein 96.3e-3774.12Show/hide
Query:  MKMGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVA--PATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTP-------
        MKMGFQF+M LALFATS MAQAPGAAPAQPP+TPAVPPPSTPPP  +  PATPPP ATPPPATPPPA  PP S PPSSPP+QPPASPPTSP P       
Subjt:  MKMGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVA--PATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTP-------

Query:  --PPKEGPASSPTPSSASPPSPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA
          PPKEGP S PT   +SPPSPP EG  P+ SPGP+ PPPPP  NGAA+VSRG+MVGGAVAGA LAM+FA
Subjt:  --PPKEGPASSPTPSSASPPSPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA

A0A5D3CV77 Vegetative cell wall protein gp12.8e-3774.12Show/hide
Query:  MKMGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVA--PATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTP-------
        MKMGFQF+M LALFATS MAQAPGAAPAQPP+TPAVPPPSTPPP  +  PATPPP ATPPPATPPPA  PP S PPSSPP+QPPASPPTSP P       
Subjt:  MKMGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVA--PATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTP-------

Query:  --PPKEGPASSPTPSSASPPSPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA
          PPKEGP S PT   +SPPSPP EG  P++SPGP+ PPPPP  NGAA+VSRG+MVGGAVAGA LAM+FA
Subjt:  --PPKEGPASSPTPSSASPPSPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA

A0A6J1ESF0 classical arabinogalactan protein 9-like7.4e-62100Show/hide
Query:  MKMGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAPATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTPPPKEGPASS
        MKMGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAPATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTPPPKEGPASS
Subjt:  MKMGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAPATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTPPPKEGPASS

Query:  PTPSSASPPSPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA
        PTPSSASPPSPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA
Subjt:  PTPSSASPPSPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA

A0A6J1J5L5 classical arabinogalactan protein 4-like1.8e-6098.74Show/hide
Query:  MKMGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAPATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTPPPKEGPASS
        MKMGFQF+MVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAPATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTPPPKEGPASS
Subjt:  MKMGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAPATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTPPPKEGPASS

Query:  PTPSSASPPSPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA
        PTPSSASPPSPPSEGM PSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA
Subjt:  PTPSSASPPSPPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G10430.1 arabinogalactan protein 41.1e-0454.63Show/hide
Query:  QFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAP---ATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTPP--PKEGPASS
        Q  ++LALFATS++AQAP       PT  A PPP+TPPPV  P   ATPPPAATP PATPPPA TP P+  P S    P   P  SP  P  P   P+S+
Subjt:  QFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAP---ATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTPP--PKEGPASS

Query:  PTPSSASP
        P PS ASP
Subjt:  PTPSSASP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATGGGTTTTCAATTTCTAATGGTTTTGGCTTTATTTGCCACTTCTTCAATGGCTCAGGCTCCCGGCGCTGCTCCGGCTCAGCCACCCACCACTCCGGCCGTTCC
TCCGCCGTCTACTCCTCCCCCAGTAGTCGCTCCCGCCACCCCACCACCGGCTGCAACCCCACCTCCCGCCACTCCTCCACCAGCCGTGACCCCACCTCCTAGCCAACCAC
CATCATCCCCACCGACCCAACCACCAGCTTCACCTCCCACATCACCAACCCCACCACCAAAGGAAGGCCCGGCCTCATCTCCGACACCATCCTCTGCCTCGCCGCCATCA
CCACCATCGGAAGGAATGGGCCCGTCCGCTAGCCCTGGACCCAACTCGCCGCCACCTCCACCGGGAGATAACGGCGCAGCCACCGTTAGCCGGGGAGTGATGGTGGGCGG
CGCTGTGGCGGGAGCTCTGTTGGCAATGGTGTTTGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGATGGGTTTTCAATTTCTAATGGTTTTGGCTTTATTTGCCACTTCTTCAATGGCTCAGGCTCCCGGCGCTGCTCCGGCTCAGCCACCCACCACTCCGGCCGTTCC
TCCGCCGTCTACTCCTCCCCCAGTAGTCGCTCCCGCCACCCCACCACCGGCTGCAACCCCACCTCCCGCCACTCCTCCACCAGCCGTGACCCCACCTCCTAGCCAACCAC
CATCATCCCCACCGACCCAACCACCAGCTTCACCTCCCACATCACCAACCCCACCACCAAAGGAAGGCCCGGCCTCATCTCCGACACCATCCTCTGCCTCGCCGCCATCA
CCACCATCGGAAGGAATGGGCCCGTCCGCTAGCCCTGGACCCAACTCGCCGCCACCTCCACCGGGAGATAACGGCGCAGCCACCGTTAGCCGGGGAGTGATGGTGGGCGG
CGCTGTGGCGGGAGCTCTGTTGGCAATGGTGTTTGCTTAG
Protein sequenceShow/hide protein sequence
MKMGFQFLMVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVAPATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTPPPKEGPASSPTPSSASPPS
PPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA