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CmoCh16G007970 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G007970
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontranscription factor bHLH25-like
Genome locationCmo_Chr16:4058128..4059910
RNA-Seq ExpressionCmoCh16G007970
SyntenyCmoCh16G007970
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR036638 - Helix-loop-helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577330.1 Transcription factor basic helix-loop-helix 25, partial [Cucurbita argyrosperma subsp. sororia]1.1e-5077.18Show/hide
Query:  MEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCP-AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALS
        MEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRS GGSAAVASSSSQMILFQEGKFCP AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALS
Subjt:  MEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCP-AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALS

Query:  ALLPGLKK-----VPSNTISY---------SINSRNSDFNIESKELVRK
        ALLPGLKK     +  + I Y         S+     + NIES  L++K
Subjt:  ALLPGLKK-----VPSNTISY---------SINSRNSDFNIESKELVRK

KAG7015418.1 Transcription factor bHLH25, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-1661.8Show/hide
Query:  AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKK-----VPSNTISY---------SINSRNSDFNIESKELVRK
        A+AEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKK     +  + I Y         S+     + NIES   ++K
Subjt:  AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKK-----VPSNTISY---------SINSRNSDFNIESKELVRK

XP_022929215.1 transcription factor bHLH25-like [Cucurbita moschata]1.4e-5377.85Show/hide
Query:  MMEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCPAAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALS
        MMEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCPAAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALS
Subjt:  MMEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCPAAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALS

Query:  ALLPGLKK-----VPSNTISY---------SINSRNSDFNIESKELVRK
        ALLPGLKK     +  + I Y         S+     + NIES   ++K
Subjt:  ALLPGLKK-----VPSNTISY---------SINSRNSDFNIESKELVRK

XP_022985138.1 transcription factor bHLH25-like [Cucurbita maxima]6.5e-5176.16Show/hide
Query:  MMEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCP--AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIA
        MMEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRS GGSAA+ASSSSQMILFQEGKFCP  AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIA
Subjt:  MMEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCP--AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIA

Query:  LSALLPGLKK-----VPSNTISY---------SINSRNSDFNIESKELVRK
        LSALLPGLKK     +  + I Y         S+     + NIES  L++K
Subjt:  LSALLPGLKK-----VPSNTISY---------SINSRNSDFNIESKELVRK

XP_023552894.1 transcription factor bHLH25-like [Cucurbita pepo subsp. pepo]1.1e-5075.5Show/hide
Query:  MEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCP---AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIA
        ME EQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCP   AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIA
Subjt:  MEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCP---AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIA

Query:  LSALLPGLKK-----VPSNTISY---------SINSRNSDFNIESKELVRK
        LSALLPGLKK     +  + I Y         S+     + NIE+  L++K
Subjt:  LSALLPGLKK-----VPSNTISY---------SINSRNSDFNIESKELVRK

TrEMBL top hitse value%identityAlignment
A0A0L9TPS2 BHLH domain-containing protein2.5e-0871.74Show/hide
Query:  VNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTI
        V + RNP +A+DHV+AERKRREKLSQRFIALSAL+PGLKK    T+
Subjt:  VNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTI

A0A0S3R5E3 BHLH domain-containing protein2.5e-0871.74Show/hide
Query:  VNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTI
        V + RNP +A+DHV+AERKRREKLSQRFIALSAL+PGLKK    T+
Subjt:  VNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTI

A0A6J1ETR4 transcription factor bHLH25-like6.8e-5477.85Show/hide
Query:  MMEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCPAAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALS
        MMEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCPAAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALS
Subjt:  MMEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCPAAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALS

Query:  ALLPGLKK-----VPSNTISY---------SINSRNSDFNIESKELVRK
        ALLPGLKK     +  + I Y         S+     + NIES   ++K
Subjt:  ALLPGLKK-----VPSNTISY---------SINSRNSDFNIESKELVRK

A0A6J1JCQ1 transcription factor bHLH25-like3.2e-5176.16Show/hide
Query:  MMEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCP--AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIA
        MMEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRS GGSAA+ASSSSQMILFQEGKFCP  AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIA
Subjt:  MMEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCP--AAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIA

Query:  LSALLPGLKK-----VPSNTISY---------SINSRNSDFNIESKELVRK
        LSALLPGLKK     +  + I Y         S+     + NIES  L++K
Subjt:  LSALLPGLKK-----VPSNTISY---------SINSRNSDFNIESKELVRK

V7CES6 BHLH domain-containing protein1.9e-0871.74Show/hide
Query:  VNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTI
        V + RNP +A+DHV+AERKRREKLSQRFIALSAL+PGLKK+   T+
Subjt:  VNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTI

SwissProt top hitse value%identityAlignment
Q1PF16 Transcription factor bHLH192.9e-0954.93Show/hide
Query:  RNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTISYSINSRNSDFN------IESKELVRKLE
        R+P  AK+HVLAERKRREKLS++FIALSALLPGLKK    TI     SR            E KE  R++E
Subjt:  RNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTISYSINSRNSDFN------IESKELVRKLE

Q1PF17 Transcription factor bHLH185.5e-0864.29Show/hide
Query:  RNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTI
        R+   A+DH+LAERKRREKL+QRF+ALSAL+PGLKK+   ++
Subjt:  RNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTI

Q8S3F1 Transcription factor NAI12.1e-0750.75Show/hide
Query:  RNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTISYSINSRNSDFNIESKELVRKLEDE
        R P   K+HVLAERKRR+KL++R IALSALLPGLKK    T+             + +E V+KLE+E
Subjt:  RNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTISYSINSRNSDFNIESKELVRKLEDE

Q9T072 Transcription factor bHLH253.2e-0864.29Show/hide
Query:  RNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTI
        RN   A+DH++AERKRREKL+QRF+ALSAL+PGLKK+   ++
Subjt:  RNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTI

Arabidopsis top hitse value%identityAlignment
AT2G22750.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein3.9e-0964.29Show/hide
Query:  RNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTI
        R+   A+DH+LAERKRREKL+QRF+ALSAL+PGLKK+   ++
Subjt:  RNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTI

AT2G22750.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein3.9e-0964.29Show/hide
Query:  RNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTI
        R+   A+DH+LAERKRREKL+QRF+ALSAL+PGLKK+   ++
Subjt:  RNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTI

AT2G22760.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.1e-1054.93Show/hide
Query:  RNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTISYSINSRNSDFN------IESKELVRKLE
        R+P  AK+HVLAERKRREKLS++FIALSALLPGLKK    TI     SR            E KE  R++E
Subjt:  RNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTISYSINSRNSDFN------IESKELVRKLE

AT2G22770.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.5e-0850.75Show/hide
Query:  RNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTISYSINSRNSDFNIESKELVRKLEDE
        R P   K+HVLAERKRR+KL++R IALSALLPGLKK    T+             + +E V+KLE+E
Subjt:  RNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTISYSINSRNSDFNIESKELVRKLEDE

AT4G37850.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.3e-0964.29Show/hide
Query:  RNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTI
        RN   A+DH++AERKRREKL+QRF+ALSAL+PGLKK+   ++
Subjt:  RNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVPSNTI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGAAGAAGAACAAGATTCATCGTTGCTATTTCATGATCAGTATCAATTATTCAACGCCACCCCCACCTCCGATTCACCTCCATTATTCAACCACTGGCGGTCTTG
CGGTGGCTCAGCGGCCGTGGCATCTTCATCGTCTCAGATGATCTTATTTCAGGAGGGTAAGTTTTGTCCGGCGGCGGCTGAGATTTGGCCGTTGGTTAATGTTGGTAGAA
ATCCGCCGCGTGCTAAAGATCACGTTCTGGCTGAGAGGAAACGCCGGGAGAAACTCAGCCAGAGATTCATTGCTCTTTCAGCCCTCTTACCTGGCCTTAAGAAGGTTCCT
TCTAACACCATCTCTTATTCAATTAATTCCAGAAATTCGGACTTTAATATAGAATCAAAAGAGCTCGTACGAAAGTTAGAAGATGAATTGTTCAAGTTCATAACAACATA
A
mRNA sequenceShow/hide mRNA sequence
ATGATGGAAGAAGAACAAGATTCATCGTTGCTATTTCATGATCAGTATCAATTATTCAACGCCACCCCCACCTCCGATTCACCTCCATTATTCAACCACTGGCGGTCTTG
CGGTGGCTCAGCGGCCGTGGCATCTTCATCGTCTCAGATGATCTTATTTCAGGAGGGTAAGTTTTGTCCGGCGGCGGCTGAGATTTGGCCGTTGGTTAATGTTGGTAGAA
ATCCGCCGCGTGCTAAAGATCACGTTCTGGCTGAGAGGAAACGCCGGGAGAAACTCAGCCAGAGATTCATTGCTCTTTCAGCCCTCTTACCTGGCCTTAAGAAGGTTCCT
TCTAACACCATCTCTTATTCAATTAATTCCAGAAATTCGGACTTTAATATAGAATCAAAAGAGCTCGTACGAAAGTTAGAAGATGAATTGTTCAAGTTCATAACAACATA
A
Protein sequenceShow/hide protein sequence
MMEEEQDSSLLFHDQYQLFNATPTSDSPPLFNHWRSCGGSAAVASSSSQMILFQEGKFCPAAAEIWPLVNVGRNPPRAKDHVLAERKRREKLSQRFIALSALLPGLKKVP
SNTISYSINSRNSDFNIESKELVRKLEDELFKFITT