CuGenDBv2

Gene ID	CmoCh16G008130
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	PHD finger protein ALFIN-LIKE 7
Genome location	Cmo_Chr16:4203499..4204779
RNA-Seq Expression	CmoCh16G008130
Synteny	CmoCh16G008130
Gene Ontology terms	GO:0006325 - chromatin organization (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0005634 - nucleus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function) GO:0003712 - transcription coregulator activity (molecular function) GO:0042393 - histone binding (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR021998 - Alfin, N-terminal IPR045104 - Alfin

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022929467.1 PHD finger protein Alfin1-like isoform X2 [Cucurbita moschata]

2.3e-17

86.79

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Query:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL
        MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDP   +L   GL
Subjt:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL

XP_023552192.1 PHD finger protein Alfin1-like isoform X1 [Cucurbita pepo subsp. pepo]

2.3e-17

86.79

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Query:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL
        MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDP   +L   GL
Subjt:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL

XP_023552194.1 PHD finger protein ALFIN-LIKE 7-like isoform X2 [Cucurbita pepo subsp. pepo]

2.3e-17

86.79

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Query:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL
        MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDP   +L   GL
Subjt:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL

XP_023552195.1 PHD finger protein Alfin1-like isoform X3 [Cucurbita pepo subsp. pepo]

2.3e-17

86.79

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Query:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL
        MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDP   +L   GL
Subjt:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL

XP_023552196.1 PHD finger protein Alfin1-like isoform X4 [Cucurbita pepo subsp. pepo]

2.3e-17

86.79

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Query:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL
        MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDP   +L   GL
Subjt:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L6S9 PHD-type domain-containing protein

7.1e-17

84.91

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Query:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL
        MEGMP PIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDP   +L   GL
Subjt:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL

A0A6J1EMV5 PHD finger protein Alfin1-like isoform X2

1.1e-17

86.79

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Query:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL
        MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDP   +L   GL
Subjt:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL

A0A6J1EN79 PHD finger protein Alfin1-like isoform X1

1.1e-17

86.79

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Query:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL
        MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDP   +L   GL
Subjt:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL

A0A6J1J8D6 PHD finger protein Alfin1-like isoform X2

1.1e-17

86.79

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Query:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL
        MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDP   +L   GL
Subjt:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL

A0A6J1JA89 PHD finger protein Alfin1-like isoform X1

1.1e-17

86.79

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Query:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL
        MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDP   +L   GL
Subjt:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL

SwissProt top hits

e value

%identity

Alignment

Q40359 PHD finger protein Alfin1

4.6e-13

79.55

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Query:  MEGMPL-PIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDP
        MEGM   P+PRTVEEV+ D+KGRRAGLIKALTTDVEKFYQ  DP
Subjt:  MEGMPL-PIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDP

Q5XEM9 PHD finger protein ALFIN-LIKE 5

2.5e-11

82.86

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Query:  PRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDP
        PRTVEEV+ DFKGRRAG+I+ALTTDVE F+QQCDP
Subjt:  PRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDP

Q8LA16 PHD finger protein ALFIN-LIKE 7

3.8e-15

69.81

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Query:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL
        MEG+  PIPRTVEEV+ DF+GRRAGLIKAL+TDV+KFY QCDP   +L   GL
Subjt:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL

Q8S8M9 PHD finger protein ALFIN-LIKE 6

4.2e-14

67.92

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Query:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL
        MEG+  PIPRTVEEV+ DF+GRRAGLIKALT D+ KFYQ CDP   +L   GL
Subjt:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL

Q9M2B4 PHD finger protein ALFIN-LIKE 3

1.1e-11

62.75

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Query:  GMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL
        G  L  PRTVEEV+ DFKGRR  ++KALTTDV++FYQQCDP   +L   GL
Subjt:  GMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL

Arabidopsis top hits

e value

%identity

Alignment

AT1G14510.1 alfin-like 7

2.7e-16

69.81

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Query:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL
        MEG+  PIPRTVEEV+ DF+GRRAGLIKAL+TDV+KFY QCDP   +L   GL
Subjt:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL

AT2G02470.1 alfin-like 6

3.0e-15

67.92

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Query:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL
        MEG+  PIPRTVEEV+ DF+GRRAGLIKALT D+ KFYQ CDP   +L   GL
Subjt:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL

AT2G02470.2 alfin-like 6

3.0e-15

67.92

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Query:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL
        MEG+  PIPRTVEEV+ DF+GRRAGLIKALT D+ KFYQ CDP   +L   GL
Subjt:  MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL

AT3G42790.1 alfin-like 3

8.1e-13

62.75

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Query:  GMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL
        G  L  PRTVEEV+ DFKGRR  ++KALTTDV++FYQQCDP   +L   GL
Subjt:  GMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGL

AT5G20510.1 alfin-like 5

1.8e-12

82.86

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Query:  PRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDP
        PRTVEEV+ DFKGRRAG+I+ALTTDVE F+QQCDP
Subjt:  PRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDP

Sequences

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CDS sequence

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ATGGAGGGAATGCCGCTCCCAATACCCCGTACAGTGGAGGAGGTCTATGGCGACTTCAAAGGCAGGCGTGCTGGCTTGATTAAAGCCCTAACCACTGATGTTGAGAAGTT
TTACCAGCAGTGCGATCCTGGTGGGTTTTCTCTTTCCTCTATTGGTCTCGCTATACCTATTAATCATAGGCGTGTCTCCATGAAACAAACTGTCTGTTTTTAA

mRNA sequence

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AGTAAATTGAAAATAAACTGACATTTTCTCTCCCGTTCTTTCTCCCCTTGTTTTTCTGTCTTCAACTCATTGTTACTTACAAAAACCCAACAAACCCTAAAACTGTCCCT
TCAATTTTTCTTCTTCATTTCTTCGATTACTAGTTTTATACCTCAATTTCAGCTCTTCCTTCCAAGAAATTTGCAGTTTCAGTATTGAAATTCCTACTGAAATCCCTAAT
CTTCTCAGTGGGCGGCTCATTTTGGAGAGGAAAATGGAGGGAATGCCGCTCCCAATACCCCGTACAGTGGAGGAGGTCTATGGCGACTTCAAAGGCAGGCGTGCTGGCTT
GATTAAAGCCCTAACCACTGATGTTGAGAAGTTTTACCAGCAGTGCGATCCTGGTGGGTTTTCTCTTTCCTCTATTGGTCTCGCTATACCTATTAATCATAGGCGTGTCT
CCATGAAACAAACTGTCTGTTTTTAA

Protein sequence

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MEGMPLPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPGGFSLSSIGLAIPINHRRVSMKQTVCF

CmoCh16G008130 (gene) of Cucurbita moschata (Rifu) v1 genome