; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh16G008380 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G008380
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPMD domain-containing protein
Genome locationCmo_Chr16:4405637..4408213
RNA-Seq ExpressionCmoCh16G008380
SyntenyCmoCh16G008380
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577368.1 hypothetical protein SDJN03_24942, partial [Cucurbita argyrosperma subsp. sororia]7.1e-7499.31Show/hide
Query:  MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP
        MSEVGSERS+SWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP
Subjt:  MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP

Query:  TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
        TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Subjt:  TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

XP_022929232.1 uncharacterized protein LOC111435885 isoform X1 [Cucurbita moschata]1.4e-6982.86Show/hide
Query:  MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNT--
        MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNT  
Subjt:  MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNT--

Query:  ----------------------------VPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
                                    VPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Subjt:  ----------------------------VPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

XP_022929236.1 uncharacterized protein LOC111435885 isoform X2 [Cucurbita moschata]2.5e-74100Show/hide
Query:  MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP
        MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP
Subjt:  MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP

Query:  TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
        TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Subjt:  TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

XP_022984567.1 uncharacterized protein LOC111482824 isoform X2 [Cucurbita maxima]6.0e-7397.93Show/hide
Query:  MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP
        MSEVGSERS+SWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKF+SPNTVP
Subjt:  MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP

Query:  TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
        TSYASDFSVLMPGQ IPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Subjt:  TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

XP_023552325.1 uncharacterized protein LOC111810023 [Cucurbita pepo subsp. pepo]1.3e-7096.55Show/hide
Query:  MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP
        MSEVGSERS+SWNIYTTSEQSPSSSQT IGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKF S NTVP
Subjt:  MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP

Query:  TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
        TSYASDFSVLMPGQ IPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Subjt:  TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

TrEMBL top hitse value%identityAlignment
A0A6J1EM82 uncharacterized protein LOC111435885 isoform X16.7e-7082.86Show/hide
Query:  MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNT--
        MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNT  
Subjt:  MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNT--

Query:  ----------------------------VPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
                                    VPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Subjt:  ----------------------------VPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

A0A6J1EMJ9 uncharacterized protein LOC111435885 isoform X21.2e-74100Show/hide
Query:  MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP
        MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP
Subjt:  MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP

Query:  TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
        TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Subjt:  TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

A0A6J1FV27 uncharacterized protein LOC1114475419.4e-6488.36Show/hide
Query:  MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSS-EVTNNSAESGPAEKFISPNTV
        MSE+GSERS+SWNIYTT +QSP SSQTGIGQ+APWK+FGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTS FSSS EVTNN A+SGP EKF SPNTV
Subjt:  MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSS-EVTNNSAESGPAEKFISPNTV

Query:  PTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
        PTSYA+DFSVLMPGQ IPTFIAQPAPLPCQRE  YWPSHDHNFLGP
Subjt:  PTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

A0A6J1J2I5 uncharacterized protein LOC111482824 isoform X22.9e-7397.93Show/hide
Query:  MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP
        MSEVGSERS+SWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKF+SPNTVP
Subjt:  MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVP

Query:  TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
        TSYASDFSVLMPGQ IPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Subjt:  TSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

A0A6J1JAW6 uncharacterized protein LOC111482824 isoform X11.7e-6881.14Show/hide
Query:  MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNT--
        MSEVGSERS+SWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKF+SPNT  
Subjt:  MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNT--

Query:  ----------------------------VPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
                                    VPTSYASDFSVLMPGQ IPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Subjt:  ----------------------------VPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G09812.1 unknown protein1.1e-2451.13Show/hide
Query:  RSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRP-TSPFSSSEVTNNSAESGPAE---KFISPNTVPTSY
        +S SW+IY+  E            E PW+S  +SMNAISFGFVATAILISMFLIMAIFEHLFRP  S F S          G ++        + VP S 
Subjt:  RSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRP-TSPFSSSEVTNNSAESGPAE---KFISPNTVPTSY

Query:  ASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWP
          D SV+MPG+ +P+ IA PAPLPC+RE I+WP
Subjt:  ASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWP

AT1G11120.1 unknown protein2.0e-1840.38Show/hide
Query:  PSSSQTGIGQEAPWKS-FGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSP------------------------------FSSSEVTNN------S
        P  +   + +E PWKS F  S+NA+SFGFVATAILISMFL+MAIFE L R T+                               + S + +NN      S
Subjt:  PSSSQTGIGQEAPWKS-FGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSP------------------------------FSSSEVTNN------S

Query:  AESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDH
             +E FI      T Y++  SVLMPG DIPTFIA PAP+PC  + I    H H
Subjt:  AESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDH

AT1G11120.2 unknown protein1.5e-2146.15Show/hide
Query:  PSSSQTGIGQEAPWKS-FGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNS----------AESGPAEKFISPNTVPTSYASDFSVL
        P  +   + +E PWKS F  S+NA+SFGFVATAILISMFL+MAIFE L R T+  +++  +++S            +G A K    +   T Y++  SVL
Subjt:  PSSSQTGIGQEAPWKS-FGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNS----------AESGPAEKFISPNTVPTSYASDFSVL

Query:  MPGQDIPTFIAQPAPLPCQRERIYWPSHDH
        MPG DIPTFIA PAP+PC  + I    H H
Subjt:  MPGQDIPTFIAQPAPLPCQRERIYWPSHDH

AT1G58007.1 unknown protein3.4e-2148.87Show/hide
Query:  SERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYAS
        S    +W+IY T + S                 GSSMNAISFGFVATAILI MF+IMAI EHLFR +   SS +V ++S     AEK    + VP +  S
Subjt:  SERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYAS

Query:  DFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSH
        D SV+MPG  +P+++A PAP PC+RE I WPSH
Subjt:  DFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSH

AT1G58007.2 unknown protein3.4e-2148.87Show/hide
Query:  SERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYAS
        S    +W+IY T + S                 GSSMNAISFGFVATAILI MF+IMAI EHLFR +   SS +V ++S     AEK    + VP +  S
Subjt:  SERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYAS

Query:  DFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSH
        D SV+MPG  +P+++A PAP PC+RE I WPSH
Subjt:  DFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGAGGTTGGTTCTGAAAGATCAGAGTCATGGAACATATACACGACTTCAGAGCAGAGCCCATCATCATCTCAAACAGGCATTGGTCAAGAAGCTCCATGGAAGAG
CTTTGGATCCTCCATGAATGCCATTTCCTTTGGCTTTGTTGCCACTGCAATCTTGATATCAATGTTCCTTATCATGGCAATCTTTGAGCATCTGTTTAGACCAACATCTC
CTTTCTCCTCATCTGAAGTGACCAACAACTCCGCAGAATCAGGTCCTGCCGAGAAATTCATAAGTCCTAATACGGTGCCAACATCATATGCGTCTGATTTCTCAGTGTTG
ATGCCAGGGCAGGACATCCCCACCTTCATTGCGCAACCAGCTCCTCTGCCATGCCAAAGAGAGAGGATTTATTGGCCATCTCATGACCATAATTTTTTAGGTCCTTGA
mRNA sequenceShow/hide mRNA sequence
TTAGAAACTCTTAAGAAACTGATTTAGTTTATAGCAGATGATATCAGAATATAAGTAACTGGCATCACAGAGGATCTTGGGCATCTTCTTCTTCCTCTTCCCTTGGCTTC
TAGCTAAGGGTCGTCAGCAGCAATACATTCTTATGTGGAAGCCATTTTCATCAGAATCAGTTTTTCTCCAAGCATTCAGTTGAAGAAGATTGAAACCACAGAGGTATGAG
TGAGGTTGGTTCTGAAAGATCAGAGTCATGGAACATATACACGACTTCAGAGCAGAGCCCATCATCATCTCAAACAGGCATTGGTCAAGAAGCTCCATGGAAGAGCTTTG
GATCCTCCATGAATGCCATTTCCTTTGGCTTTGTTGCCACTGCAATCTTGATATCAATGTTCCTTATCATGGCAATCTTTGAGCATCTGTTTAGACCAACATCTCCTTTC
TCCTCATCTGAAGTGACCAACAACTCCGCAGAATCAGGTCCTGCCGAGAAATTCATAAGTCCTAATACGGTGCCAACATCATATGCGTCTGATTTCTCAGTGTTGATGCC
AGGGCAGGACATCCCCACCTTCATTGCGCAACCAGCTCCTCTGCCATGCCAAAGAGAGAGGATTTATTGGCCATCTCATGACCATAATTTTTTAGGTCCTTGAGGCAAAT
ATATGGTATTTCTTGCCACCATAGAAAGCAGTTACTGTATTTAGGAAAACTATCAGCTTTGCTTTTTCTCAGAATAATAATACTTTGTGCTTCTTCACCCACAGGGAGAT
TTGCCAAATGCTGATACTTTTTTGTTCCCAGTTTCTCATCTGTAAATTGATTATCAAAGAAGTCAGCAGTATTTACACGATTCTACTTGTTTGATAAAGATTTGAGATAT
AAGTAGAAATCACCTCACTTTTATGCTCATCATTTTAGGCTGATGGTGAATCTCCGCTTCTT
Protein sequenceShow/hide protein sequence
MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVL
MPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP