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CmoCh16G008770 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G008770
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description(+)-gamma-cadinene synthase-like
Genome locationCmo_Chr16:4714370..4714857
RNA-Seq ExpressionCmoCh16G008770
SyntenyCmoCh16G008770
Gene Ontology termsGO:0045338 - farnesyl diphosphate metabolic process (biological process)
GO:0051762 - sesquiterpene biosynthetic process (biological process)
GO:0000287 - magnesium ion binding (molecular function)
GO:0010334 - sesquiterpene synthase activity (molecular function)
InterPro domainsIPR005630 - Terpene synthase, metal-binding domain
IPR008949 - Isoprenoid synthase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577411.1 hypothetical protein SDJN03_24985, partial [Cucurbita argyrosperma subsp. sororia]3.4e-1757.58Show/hide
Query:  FFKIRFR--HKLHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKW
        F K+ F    KLH+ ELKELT  +  +   +   Y     DRIVECYF   G YF+ QFNV RKILTK+IA SSILDD YDAY TF+ELQ FT AIQ+W
Subjt:  FFKIRFR--HKLHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKW

XP_022929224.1 (+)-gamma-cadinene synthase-like isoform X1 [Cucurbita moschata]1.2e-1748.82Show/hide
Query:  KKSPSKIKGKRVYINVSTRCFPFSNFAYFFKIRFR--HKLHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIAT
        +K   K+KG+                  F K+ F    KL++ ELKELT  +  +   +   Y     DRIVECYF T GAYF+ QFNV RKILTK+IA 
Subjt:  KKSPSKIKGKRVYINVSTRCFPFSNFAYFFKIRFR--HKLHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIAT

Query:  SSILDDIYDAYETFKELQFFTPAIQKW
        SSILDD YDAY TF+ELQ FT AIQ+W
Subjt:  SSILDDIYDAYETFKELQFFTPAIQKW

XP_022929225.1 (+)-gamma-cadinene synthase-like isoform X2 [Cucurbita moschata]1.2e-1748.82Show/hide
Query:  KKSPSKIKGKRVYINVSTRCFPFSNFAYFFKIRFR--HKLHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIAT
        +K   K+KG+                  F K+ F    KL++ ELKELT  +  +   +   Y     DRIVECYF T GAYF+ QFNV RKILTK+IA 
Subjt:  KKSPSKIKGKRVYINVSTRCFPFSNFAYFFKIRFR--HKLHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIAT

Query:  SSILDDIYDAYETFKELQFFTPAIQKW
        SSILDD YDAY TF+ELQ FT AIQ+W
Subjt:  SSILDDIYDAYETFKELQFFTPAIQKW

XP_022985191.1 (+)-gamma-cadinene synthase-like isoform X1 [Cucurbita maxima]1.2e-1758.59Show/hide
Query:  FFKIRFR--HKLHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKW
        F K+ F    KL++ ELKELT  +  +   +   Y     DRIVECYF T GAYF+ QFNV RKILTK+IA SSILDD YDAY TF+ELQ FT AIQ+W
Subjt:  FFKIRFR--HKLHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKW

XP_023552097.1 (+)-gamma-cadinene synthase-like [Cucurbita pepo subsp. pepo]2.6e-1757.58Show/hide
Query:  FFKIRFR--HKLHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKW
        F K+ F    KL++ ELKELT  +  +   +   Y     DRIVECYF T GAYF+ QFNV RKILTK+IA SSILDD YDAY TF+EL+ FT AIQ+W
Subjt:  FFKIRFR--HKLHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKW

TrEMBL top hitse value%identityAlignment
A0A6J1EN57 (+)-gamma-cadinene synthase-like isoform X15.7e-1848.82Show/hide
Query:  KKSPSKIKGKRVYINVSTRCFPFSNFAYFFKIRFR--HKLHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIAT
        +K   K+KG+                  F K+ F    KL++ ELKELT  +  +   +   Y     DRIVECYF T GAYF+ QFNV RKILTK+IA 
Subjt:  KKSPSKIKGKRVYINVSTRCFPFSNFAYFFKIRFR--HKLHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIAT

Query:  SSILDDIYDAYETFKELQFFTPAIQKW
        SSILDD YDAY TF+ELQ FT AIQ+W
Subjt:  SSILDDIYDAYETFKELQFFTPAIQKW

A0A6J1ETS1 (+)-gamma-cadinene synthase-like isoform X25.7e-1848.82Show/hide
Query:  KKSPSKIKGKRVYINVSTRCFPFSNFAYFFKIRFR--HKLHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIAT
        +K   K+KG+                  F K+ F    KL++ ELKELT  +  +   +   Y     DRIVECYF T GAYF+ QFNV RKILTK+IA 
Subjt:  KKSPSKIKGKRVYINVSTRCFPFSNFAYFFKIRFR--HKLHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIAT

Query:  SSILDDIYDAYETFKELQFFTPAIQKW
        SSILDD YDAY TF+ELQ FT AIQ+W
Subjt:  SSILDDIYDAYETFKELQFFTPAIQKW

A0A6J1EW93 (+)-gamma-cadinene synthase-like3.1e-1656.57Show/hide
Query:  FFKIRFR--HKLHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKW
        F K+ F    KLH+ ELKELT  +  +   +   +     DRIVE YF T GAYF+  F+V RKILTK+IA SSILDDIYDAY TF+ELQ FT AIQ+W
Subjt:  FFKIRFR--HKLHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKW

A0A6J1J7F9 (+)-gamma-cadinene synthase-like isoform X15.7e-1858.59Show/hide
Query:  FFKIRFR--HKLHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKW
        F K+ F    KL++ ELKELT  +  +   +   Y     DRIVECYF T GAYF+ QFNV RKILTK+IA SSILDD YDAY TF+ELQ FT AIQ+W
Subjt:  FFKIRFR--HKLHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKW

A0A6J1JAP8 (+)-gamma-cadinene synthase-like2.8e-1756.57Show/hide
Query:  FFKIRFR--HKLHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKW
        F K+ F    KL++ ELKELT  +  +   +   Y     DRIVECYF T GAYF+ QFN+ R+ILTK+IA SSILDD YDAY TF+ELQ FT AIQ+W
Subjt:  FFKIRFR--HKLHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKW

SwissProt top hitse value%identityAlignment
B2KSJ5 (+)-gamma-cadinene synthase4.2e-1848.46Show/hide
Query:  KKSPSKIKGKRVYINVSTRCFPFSN--FAYFFKIRFR--HKLHRNELKELTCLYLFVYAISYLTYKITFL-DRIVECYFGTSGAYFKLQFNVKRKILTKI
        +KS  +IK  R Y+ +  +  P  N     F K+ F    KLH+ EL E+ C +   +    +  K  F  DRIVECYF T GAYF+ Q++V RK+LTK+
Subjt:  KKSPSKIKGKRVYINVSTRCFPFSN--FAYFFKIRFR--HKLHRNELKELTCLYLFVYAISYLTYKITFL-DRIVECYFGTSGAYFKLQFNVKRKILTKI

Query:  IATSSILDDIYDAYETFKELQFFTPAIQKW
        IA +SILDDIYDAY TF+ELQ  TPAIQ+W
Subjt:  IATSSILDDIYDAYETFKELQFFTPAIQKW

J9R5V4 Valerena-4,7(11)-diene synthase1.8e-1340.78Show/hide
Query:  FFKIRFR--HKLHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKWI
        F KI F    KLH+ EL +LT  +  +     + Y     DR VECYF   G YF+ Q++  RK+  K+I  +S++DD YD+Y TF EL  FT A+++W 
Subjt:  FFKIRFR--HKLHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKWI

Query:  TNK
         N+
Subjt:  TNK

Q49SP3 Patchoulol synthase3.1e-1345.45Show/hide
Query:  LHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKW
        LHR EL E +  +  +   + L++     DR+VE YF  SG+YF+  ++V R IL K +A  S++DD+YDAY TF+ELQ FT AI++W
Subjt:  LHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKW

Q6Q3H3 (-)-germacrene D synthase9.6e-1545.56Show/hide
Query:  KLHRNELKELTCLYLFVYAISYLTYKITFL-DRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKW
        KLH+ EL +++  +  +       +K+ F  DR+VECYF   G YF+ QF   R+ILTK+IA +SI+DDIYD Y T +EL+ FT A+++W
Subjt:  KLHRNELKELTCLYLFVYAISYLTYKITFL-DRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKW

Q84LF2 5-epi-aristolochene synthase 34.0e-1343.48Show/hide
Query:  LHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKWITNK
        LH+ EL E++  +  +  ++ L Y     DR+VECYF   G YF+ Q++  R IL K I+  SI+DD +DAY T KEL+ +T AIQ+W  N+
Subjt:  LHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKWITNK

Arabidopsis top hitse value%identityAlignment
AT3G25820.1 terpene synthase-like sequence-1,8-cineole4.3e-1043.06Show/hide
Query:  LTYKITFL-DRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKWITNK
        LT ++ F+ DRIVE YF T G  ++ QF   R+I+T + A  + +DDIYD Y T +EL+ FT  ++ W  N+
Subjt:  LTYKITFL-DRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKWITNK

AT3G25830.1 terpene synthase-like sequence-1,8-cineole4.3e-1043.06Show/hide
Query:  LTYKITFL-DRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKWITNK
        LT ++ F+ DRIVE YF T G  ++ QF   R+I+T + A  + +DDIYD Y T +EL+ FT  ++ W  N+
Subjt:  LTYKITFL-DRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKWITNK

AT4G16730.1 terpene synthase 023.9e-1134.75Show/hide
Query:  RVYINVSTRCFPFSNFAYFFKIRFRHKLHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYE
        R YINV  +    +     F     + L  N  +EL  +  +  +   +       DRI E YF T G +++ +F   RKILTKI     I+DDIYD Y 
Subjt:  RVYINVSTRCFPFSNFAYFFKIRFRHKLHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYE

Query:  TFKELQFFTPAIQKWITN
        T +EL+ FT  ++KW  N
Subjt:  TFKELQFFTPAIQKWITN

AT4G16740.1 terpene synthase 031.3e-1137.11Show/hide
Query:  FRHKLHRNELKELTCLYLFVYAISYLTYKITFL-DRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKWITNK
        F   +H++ELK L+      ++ + LT  + F+ DRI E YF + G  ++ +F   R++LTK+    + +DDIYD Y T +ELQ FT  ++KW  N+
Subjt:  FRHKLHRNELKELTCLYLFVYAISYLTYKITFL-DRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKWITNK

AT4G16740.2 terpene synthase 031.3e-1137.11Show/hide
Query:  FRHKLHRNELKELTCLYLFVYAISYLTYKITFL-DRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKWITNK
        F   +H++ELK L+      ++ + LT  + F+ DRI E YF + G  ++ +F   R++LTK+    + +DDIYD Y T +ELQ FT  ++KW  N+
Subjt:  FRHKLHRNELKELTCLYLFVYAISYLTYKITFL-DRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYDAYETFKELQFFTPAIQKWITNK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCACTAAGAAAAGCCCTTCCAAGATTAAAGGCAAGAGAGTATATATCAATGTATCGACAAGATGCTTCCCATTCTCAAACTTTGCTTACTTTTTCAAAATTAGATT
TCGACATAAACTTCATCGAAATGAGTTGAAGGAACTCACATGTTTATATTTATTTGTGTATGCAATTTCATATTTAACCTATAAAATTACATTTTTAGATAGAATTGTTG
AGTGCTACTTTGGGACATCGGGTGCGTACTTTAAACTGCAGTTTAATGTCAAAAGAAAAATATTAACTAAAATAATAGCTACTTCTTCAATTTTAGATGATATATATGAT
GCTTATGAAACATTTAAAGAACTCCAATTTTTCACTCCAGCAATTCAAAAGTGGATAACTAATAAATTTATTGTTTACATATAG
mRNA sequenceShow/hide mRNA sequence
ATGACCACTAAGAAAAGCCCTTCCAAGATTAAAGGCAAGAGAGTATATATCAATGTATCGACAAGATGCTTCCCATTCTCAAACTTTGCTTACTTTTTCAAAATTAGATT
TCGACATAAACTTCATCGAAATGAGTTGAAGGAACTCACATGTTTATATTTATTTGTGTATGCAATTTCATATTTAACCTATAAAATTACATTTTTAGATAGAATTGTTG
AGTGCTACTTTGGGACATCGGGTGCGTACTTTAAACTGCAGTTTAATGTCAAAAGAAAAATATTAACTAAAATAATAGCTACTTCTTCAATTTTAGATGATATATATGAT
GCTTATGAAACATTTAAAGAACTCCAATTTTTCACTCCAGCAATTCAAAAGTGGATAACTAATAAATTTATTGTTTACATATAG
Protein sequenceShow/hide protein sequence
MTTKKSPSKIKGKRVYINVSTRCFPFSNFAYFFKIRFRHKLHRNELKELTCLYLFVYAISYLTYKITFLDRIVECYFGTSGAYFKLQFNVKRKILTKIIATSSILDDIYD
AYETFKELQFFTPAIQKWITNKFIVYI