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CmoCh16G008780 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G008780
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description(+)-gamma-cadinene synthase-like
Genome locationCmo_Chr16:4715424..4715762
RNA-Seq ExpressionCmoCh16G008780
SyntenyCmoCh16G008780
Gene Ontology termsGO:0016102 - diterpenoid biosynthetic process (biological process)
GO:0045338 - farnesyl diphosphate metabolic process (biological process)
GO:0051762 - sesquiterpene biosynthetic process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0047461 - (+)-delta-cadinene synthase activity (molecular function)
InterPro domainsIPR008949 - Isoprenoid synthase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577411.1 hypothetical protein SDJN03_24985, partial [Cucurbita argyrosperma subsp. sororia]3.1e-2672.84Show/hide
Query:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE
        M+W L+SSGY L+++ISLIG+GDI+TNEVIEWFSRR KV KAA I+ RLMDD +SH+FEQQREH+ SAVQCYM+QY  SEE
Subjt:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE

XP_022932164.1 (+)-gamma-cadinene synthase-like [Cucurbita moschata]3.8e-2465.43Show/hide
Query:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE
        ME  L S+GY+ I++IS +G+GDI+TNEV+EW SRRPK++KA+ +I RLMDD +SH+FEQ+REHV SAV+CYM+QYG SEE
Subjt:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE

XP_022985195.1 (+)-gamma-cadinene synthase-like [Cucurbita maxima]1.1e-2877.5Show/hide
Query:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSE
        M+W LHSSGYSL+++ISLIG+GDI+TN+VIEWF +RPKV+KAA IIARLMDD +SH+FEQQREHVASAV+CYM+QYG SE
Subjt:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSE

XP_023520451.1 LOW QUALITY PROTEIN: (+)-gamma-cadinene synthase-like [Cucurbita pepo subsp. pepo]1.1e-2364.2Show/hide
Query:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE
        ME  L S+GY+ I++IS +G+GDI+TNEV+EW SRRPK++KA+ +I RLMDD +SH+FEQ+REHV SAV+CYM+QYG SE+
Subjt:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE

XP_023552097.1 (+)-gamma-cadinene synthase-like [Cucurbita pepo subsp. pepo]6.5e-2462.96Show/hide
Query:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE
        MEW LHS+GY  I++++LIG+GDI+TNE++EWF R+PK+I A+ II RLMDD IS +FEQ+R+HV S V+CYM++YG SEE
Subjt:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE

TrEMBL top hitse value%identityAlignment
A0A6J1EW93 (+)-gamma-cadinene synthase-like1.8e-2465.43Show/hide
Query:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE
        ME  L S+GY+ I++IS +G+GDI+TNEV+EW SRRPK++KA+ +I RLMDD +SH+FEQ+REHV SAV+CYM+QYG SEE
Subjt:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE

A0A6J1J473 (+)-gamma-cadinene synthase-like isoform X22.0e-2361.73Show/hide
Query:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE
        MEW LHS+GY  I++++LIG+GDI+TN+++EWF R+PK+I A+ II RLMDD +S +FEQ+REHV S V+CY +QYG SEE
Subjt:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE

A0A6J1J7F9 (+)-gamma-cadinene synthase-like isoform X12.0e-2361.73Show/hide
Query:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE
        MEW LHS+GY  I++++LIG+GDI+TN+++EWF R+PK+I A+ II RLMDD +S +FEQ+REHV S V+CY +QYG SEE
Subjt:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE

A0A6J1JAP8 (+)-gamma-cadinene synthase-like5.5e-2977.5Show/hide
Query:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSE
        M+W LHSSGYSL+++ISLIG+GDI+TN+VIEWF +RPKV+KAA IIARLMDD +SH+FEQQREHVASAV+CYM+QYG SE
Subjt:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSE

A0A6J1JCH1 LOW QUALITY PROTEIN: (+)-gamma-cadinene synthase-like2.0e-2361.73Show/hide
Query:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE
        ME  L ++GYSL+++ISL+G+G+++TN+V++W SRRPK+IK + II RLMDD +SH+FEQ+REH+ASAV+CY++QYG SEE
Subjt:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE

SwissProt top hitse value%identityAlignment
B2KSJ5 (+)-gamma-cadinene synthase1.5e-2362.2Show/hide
Query:  MEWVLHSSGYSLIVNISLIGLGD-IITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE
        ME  L ++GY+++++IS +GLGD I+TNEV++W S  P++IKA+ II RLMDD  SH+FEQ+REHVASAV+CYMKQY  SEE
Subjt:  MEWVLHSSGYSLIVNISLIGLGD-IITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE

B9SCB6 Probable terpene synthase 25.0e-1954.32Show/hide
Query:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE
        M   L S  Y L+   S +G+GDI T EV +W S  PK+++ A II RLMDD +SH+FEQ+R H+AS+V+CYMKQ G SEE
Subjt:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE

F6M8H6 Probable sesquiterpene synthase2.1e-1748.15Show/hide
Query:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE
        M   L ++GY+ +  IS +G+G+I + E  +W   RP +I+A+  + RLMDD  SH+FEQ+R HVAS ++CYMKQYG +EE
Subjt:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE

Q6Q3H2 Valencene synthase1.9e-1853.09Show/hide
Query:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE
        M   L SSGY L+   S +G+G+I T E  +W +  PK++ ++  I RLMDD  SH+FEQ+R HV SAV+CYMKQYG SEE
Subjt:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE

Q6Q3H3 (-)-germacrene D synthase5.0e-1949.38Show/hide
Query:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE
        M   L +S YS++   S +G+GD +T E  +W   +PK+++A+ I+ RLMDD + H+FEQ+R HVASAV+CYMKQ+G SE+
Subjt:  MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE

Arabidopsis top hitse value%identityAlignment
AT3G29190.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein3.1e-0834.52Show/hide
Query:  EWVLHSSGYSLIVNISLIG----LGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE
        E  +  +G  +    +L+G    +G I+  E  +W   RPK+I+A  I  RLM+D   ++ +  R + A+AV CYMKQY  +E+
Subjt:  EWVLHSSGYSLIVNISLIG----LGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE

AT4G20200.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein2.8e-0939.68Show/hide
Query:  IGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE
        + +G + T E  EW   RPK+++   I  RLM+D + ++ +  R +V +AV CYMKQYG ++E
Subjt:  IGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE

AT4G20230.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein1.8e-0839.06Show/hide
Query:  LIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE
        L+ +G   T E  EW   RPK++++     RLM+D    + +  R +V +AV CYMKQYG +E+
Subjt:  LIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE

AT5G23960.1 terpene synthase 213.2e-1341.33Show/hide
Query:  SSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE
        SSGY  ++ ++ + + D+   +  EW S  PK+  A+ II+R  DD  S++FE +REHVA+ + CYM+Q+G S+E
Subjt:  SSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE

AT5G23960.2 terpene synthase 213.2e-1341.33Show/hide
Query:  SSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE
        SSGY  ++ ++ + + D+   +  EW S  PK+  A+ II+R  DD  S++FE +REHVA+ + CYM+Q+G S+E
Subjt:  SSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATGGGTATTGCATAGCTCAGGATATTCCTTGATTGTAAACATTTCACTCATAGGCTTGGGTGACATAATAACAAATGAGGTAATTGAATGGTTTTCTAGAAGACC
TAAAGTTATTAAAGCTGCATTAATAATTGCTAGACTCATGGATGACTTCATTTCCCACCAGTTTGAGCAACAGAGAGAACATGTTGCTTCAGCAGTTCAATGTTACATGA
AACAATATGGTCGTTCAGAGGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAATGGGTATTGCATAGCTCAGGATATTCCTTGATTGTAAACATTTCACTCATAGGCTTGGGTGACATAATAACAAATGAGGTAATTGAATGGTTTTCTAGAAGACC
TAAAGTTATTAAAGCTGCATTAATAATTGCTAGACTCATGGATGACTTCATTTCCCACCAGTTTGAGCAACAGAGAGAACATGTTGCTTCAGCAGTTCAATGTTACATGA
AACAATATGGTCGTTCAGAGGAATAA
Protein sequenceShow/hide protein sequence
MEWVLHSSGYSLIVNISLIGLGDIITNEVIEWFSRRPKVIKAALIIARLMDDFISHQFEQQREHVASAVQCYMKQYGRSEE