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CmoCh16G008810 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G008810
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description(+)-gamma-cadinene synthase-like
Genome locationCmo_Chr16:4768722..4769467
RNA-Seq ExpressionCmoCh16G008810
SyntenyCmoCh16G008810
Gene Ontology termsGO:0045338 - farnesyl diphosphate metabolic process (biological process)
GO:0051762 - sesquiterpene biosynthetic process (biological process)
GO:0000287 - magnesium ion binding (molecular function)
GO:0010334 - sesquiterpene synthase activity (molecular function)
InterPro domainsIPR005630 - Terpene synthase, metal-binding domain
IPR008949 - Isoprenoid synthase domain superfamily
IPR036965 - Terpene synthase, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577411.1 hypothetical protein SDJN03_24985, partial [Cucurbita argyrosperma subsp. sororia]2.0e-2767.62Show/hide
Query:  DPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLNV---------------------------NVGRKILTKVIVISSILDDTYDAYGTFEELQIFT
        DP HSQTLLAFSKLDFN+LQKLHQK+LKE+ RWWKDLNV                           NVGRKILTKVI ISSILDDTYDAYGTFEELQIFT
Subjt:  DPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLNV---------------------------NVGRKILTKVIVISSILDDTYDAYGTFEELQIFT

Query:  QTIQR
        Q IQR
Subjt:  QTIQR

XP_022929224.1 (+)-gamma-cadinene synthase-like isoform X1 [Cucurbita moschata]7.7e-2759.35Show/hide
Query:  KKRPSKIKSKRVHNNVSRDPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLNV---------------------------NVGRKILTKVIVISSI
        +K   K+K +        DP HSQTLLAFSKLDFNILQKL+QK+LKE+ RWWKDLNV                           NVGRKILTKVI ISSI
Subjt:  KKRPSKIKSKRVHNNVSRDPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLNV---------------------------NVGRKILTKVIVISSI

Query:  LDDTYDAYGTFEELQIFTQTIQR
        LDDTYDAYGTFEELQIFT+ IQR
Subjt:  LDDTYDAYGTFEELQIFTQTIQR

XP_022929225.1 (+)-gamma-cadinene synthase-like isoform X2 [Cucurbita moschata]7.7e-2759.35Show/hide
Query:  KKRPSKIKSKRVHNNVSRDPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLNV---------------------------NVGRKILTKVIVISSI
        +K   K+K +        DP HSQTLLAFSKLDFNILQKL+QK+LKE+ RWWKDLNV                           NVGRKILTKVI ISSI
Subjt:  KKRPSKIKSKRVHNNVSRDPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLNV---------------------------NVGRKILTKVIVISSI

Query:  LDDTYDAYGTFEELQIFTQTIQR
        LDDTYDAYGTFEELQIFT+ IQR
Subjt:  LDDTYDAYGTFEELQIFTQTIQR

XP_022985191.1 (+)-gamma-cadinene synthase-like isoform X1 [Cucurbita maxima]2.9e-2658.54Show/hide
Query:  KKRPSKIKSKRVHNNVSRDPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLNV---------------------------NVGRKILTKVIVISSI
        +K   K+K++        DP HS TLLAFSKLDFNILQKL+QK+LKE+ RWWKDLNV                           NVGRKILTKVI ISSI
Subjt:  KKRPSKIKSKRVHNNVSRDPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLNV---------------------------NVGRKILTKVIVISSI

Query:  LDDTYDAYGTFEELQIFTQTIQR
        LDDTYDAYGTFEELQIFT+ IQR
Subjt:  LDDTYDAYGTFEELQIFTQTIQR

XP_023552097.1 (+)-gamma-cadinene synthase-like [Cucurbita pepo subsp. pepo]5.9e-2759.35Show/hide
Query:  KKRPSKIKSKRVHNNVSRDPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLNV---------------------------NVGRKILTKVIVISSI
        +K   K+K++        DP HSQTLLAFSKLDFNILQKL+QK+LKE+ RWWKDLNV                           NVGRKILTKVI ISSI
Subjt:  KKRPSKIKSKRVHNNVSRDPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLNV---------------------------NVGRKILTKVIVISSI

Query:  LDDTYDAYGTFEELQIFTQTIQR
        LDDTYDAYGTFEEL+IFTQ IQR
Subjt:  LDDTYDAYGTFEELQIFTQTIQR

TrEMBL top hitse value%identityAlignment
A0A6J1EN57 (+)-gamma-cadinene synthase-like isoform X13.7e-2759.35Show/hide
Query:  KKRPSKIKSKRVHNNVSRDPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLNV---------------------------NVGRKILTKVIVISSI
        +K   K+K +        DP HSQTLLAFSKLDFNILQKL+QK+LKE+ RWWKDLNV                           NVGRKILTKVI ISSI
Subjt:  KKRPSKIKSKRVHNNVSRDPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLNV---------------------------NVGRKILTKVIVISSI

Query:  LDDTYDAYGTFEELQIFTQTIQR
        LDDTYDAYGTFEELQIFT+ IQR
Subjt:  LDDTYDAYGTFEELQIFTQTIQR

A0A6J1ETS1 (+)-gamma-cadinene synthase-like isoform X23.7e-2759.35Show/hide
Query:  KKRPSKIKSKRVHNNVSRDPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLNV---------------------------NVGRKILTKVIVISSI
        +K   K+K +        DP HSQTLLAFSKLDFNILQKL+QK+LKE+ RWWKDLNV                           NVGRKILTKVI ISSI
Subjt:  KKRPSKIKSKRVHNNVSRDPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLNV---------------------------NVGRKILTKVIVISSI

Query:  LDDTYDAYGTFEELQIFTQTIQR
        LDDTYDAYGTFEELQIFT+ IQR
Subjt:  LDDTYDAYGTFEELQIFTQTIQR

A0A6J1EW93 (+)-gamma-cadinene synthase-like3.9e-2453.66Show/hide
Query:  KKRPSKIKSKRVHNNVSRDPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLNV---------------------------NVGRKILTKVIVISSI
        +K   ++K++        DP HSQTLLAFSKLDF+ILQKLHQ++LKE+ RWWKDL V                           +VGRKILTKVI +SSI
Subjt:  KKRPSKIKSKRVHNNVSRDPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLNV---------------------------NVGRKILTKVIVISSI

Query:  LDDTYDAYGTFEELQIFTQTIQR
        LDD YDAYGTFEELQ+FT  IQR
Subjt:  LDDTYDAYGTFEELQIFTQTIQR

A0A6J1J7F9 (+)-gamma-cadinene synthase-like isoform X11.4e-2658.54Show/hide
Query:  KKRPSKIKSKRVHNNVSRDPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLNV---------------------------NVGRKILTKVIVISSI
        +K   K+K++        DP HS TLLAFSKLDFNILQKL+QK+LKE+ RWWKDLNV                           NVGRKILTKVI ISSI
Subjt:  KKRPSKIKSKRVHNNVSRDPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLNV---------------------------NVGRKILTKVIVISSI

Query:  LDDTYDAYGTFEELQIFTQTIQR
        LDDTYDAYGTFEELQIFT+ IQR
Subjt:  LDDTYDAYGTFEELQIFTQTIQR

A0A6J1JAP8 (+)-gamma-cadinene synthase-like7.0e-2656.1Show/hide
Query:  KKRPSKIKSKRVHNNVSRDPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLNV---------------------------NVGRKILTKVIVISSI
        +K   K+K++        DP HS TLLAFSKLDFNILQKL+QK+LKE+ RWWKDLNV                           N+GR+ILTKVI ISSI
Subjt:  KKRPSKIKSKRVHNNVSRDPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLNV---------------------------NVGRKILTKVIVISSI

Query:  LDDTYDAYGTFEELQIFTQTIQR
        LDDTYDAYGTFEELQ+FT+ IQR
Subjt:  LDDTYDAYGTFEELQIFTQTIQR

SwissProt top hitse value%identityAlignment
B2KSJ5 (+)-gamma-cadinene synthase1.7e-2451.22Show/hide
Query:  KKRPSKIKSKRVHNNVSRDPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLNV---------------------------NVGRKILTKVIVISSI
        +K   +IK++       + P H++TLL FSKLDFNILQKLHQK+L EI RWWKDL+V                           +VGRK+LTKVI I+SI
Subjt:  KKRPSKIKSKRVHNNVSRDPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLNV---------------------------NVGRKILTKVIVISSI

Query:  LDDTYDAYGTFEELQIFTQTIQR
        LDD YDAYGTFEELQ+ T  IQR
Subjt:  LDDTYDAYGTFEELQIFTQTIQR

B9SCB6 Probable terpene synthase 25.7e-1739.02Show/hide
Query:  KKRPSKIKSKRVHNNVSRDPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLN---------------------------VNVGRKILTKVIVISSI
        +K  ++++++   +    D  H++ LL F+KLDFN+LQKLHQK+LK I+ WWKDL+                            +  RK +TKVI + S+
Subjt:  KKRPSKIKSKRVHNNVSRDPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLN---------------------------VNVGRKILTKVIVISSI

Query:  LDDTYDAYGTFEELQIFTQTIQR
        +DD YDAYGT EEL +FT  I R
Subjt:  LDDTYDAYGTFEELQIFTQTIQR

J7LP58 Bifunctional sesquiterpene synthase 11.2e-1746.08Show/hide
Query:  HSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLNV---------------------------NVGRKILTKVIVISSILDDTYDAYGTFEELQIFTQTI
        H Q LL  +KL+FNILQ LH+ +L EI+RWWK +++                            VGRKI TKVI I+S+LDDT+DAYGTFEEL+IF + +
Subjt:  HSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLNV---------------------------NVGRKILTKVIVISSILDDTYDAYGTFEELQIFTQTI

Query:  QR
        +R
Subjt:  QR

J9R5V4 Valerena-4,7(11)-diene synthase5.7e-1736.51Show/hide
Query:  MATKKRPSKIKSKRVHNNVSRDPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLNV---------------------------NVGRKILTKVIVI
        M  +K  ++I+++   +    D  H +TLL FSK+DFN+LQKLHQ++L ++  WW+ LNV                           +  RK+  KVI +
Subjt:  MATKKRPSKIKSKRVHNNVSRDPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLNV---------------------------NVGRKILTKVIVI

Query:  SSILDDTYDAYGTFEELQIFTQTIQR
        +S++DDTYD+YGTF+EL +FT  ++R
Subjt:  SSILDDTYDAYGTFEELQIFTQTIQR

U3LVZ7 Beta-caryophyllene synthase2.0e-1737.7Show/hide
Query:  KRPSKIKSKRVHNNVSRDPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLN---------------------------VNVGRKILTKVIVISSIL
        K  +++ +++  +    D  H++TLL F+KLDFN++QK+HQK+L +I RWWK+L+                             + R +LTK+I ++S+L
Subjt:  KRPSKIKSKRVHNNVSRDPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLN---------------------------VNVGRKILTKVIVISSIL

Query:  DDTYDAYGTFEELQIFTQTIQR
        DD YD YGT  EL IFTQ I+R
Subjt:  DDTYDAYGTFEELQIFTQTIQR

Arabidopsis top hitse value%identityAlignment
AT3G25820.1 terpene synthase-like sequence-1,8-cineole6.3e-1136.08Show/hide
Query:  LLAFSKLDFNILQKLHQKKLKEIARWWKDLNV-----------------NVG----------RKILTKVIVISSILDDTYDAYGTFEELQIFTQTIQ
        L+ F+K+DFNI+Q  HQ+ LK ++RWWKD  +                  VG          R+I+T V  + + +DD YD YGT EEL++FT  ++
Subjt:  LLAFSKLDFNILQKLHQKKLKEIARWWKDLNV-----------------NVG----------RKILTKVIVISSILDDTYDAYGTFEELQIFTQTIQ

AT3G25820.2 terpene synthase-like sequence-1,8-cineole6.3e-1136.08Show/hide
Query:  LLAFSKLDFNILQKLHQKKLKEIARWWKDLNV-----------------NVG----------RKILTKVIVISSILDDTYDAYGTFEELQIFTQTIQ
        L+ F+K+DFNI+Q  HQ+ LK ++RWWKD  +                  VG          R+I+T V  + + +DD YD YGT EEL++FT  ++
Subjt:  LLAFSKLDFNILQKLHQKKLKEIARWWKDLNV-----------------NVG----------RKILTKVIVISSILDDTYDAYGTFEELQIFTQTIQ

AT3G25830.1 terpene synthase-like sequence-1,8-cineole6.3e-1136.08Show/hide
Query:  LLAFSKLDFNILQKLHQKKLKEIARWWKDLNV-----------------NVG----------RKILTKVIVISSILDDTYDAYGTFEELQIFTQTIQ
        L+ F+K+DFNI+Q  HQ+ LK ++RWWKD  +                  VG          R+I+T V  + + +DD YD YGT EEL++FT  ++
Subjt:  LLAFSKLDFNILQKLHQKKLKEIARWWKDLNV-----------------NVG----------RKILTKVIVISSILDDTYDAYGTFEELQIFTQTIQ

AT4G16730.1 terpene synthase 023.7e-1135.71Show/hide
Query:  LLAFSKLDFNILQKLHQKKLKEIARWWKDLNV-----------------NVG----------RKILTKVIVISSILDDTYDAYGTFEELQIFTQTIQR
        LL F+ +DFN+LQ  HQ++LK I+ WW    +                  +G          RKILTK+ ++  I+DD YD YGT EEL++FT  +++
Subjt:  LLAFSKLDFNILQKLHQKKLKEIARWWKDLNV-----------------NVG----------RKILTKVIVISSILDDTYDAYGTFEELQIFTQTIQR

AT4G16740.1 terpene synthase 031.1e-1034.69Show/hide
Query:  LLAFSKLDFNILQKLHQKKLKEIARWWKDLNV-----------------NVG----------RKILTKVIVISSILDDTYDAYGTFEELQIFTQTIQR
        LL  +KLDFN +Q +HQ +LK ++ WW    +                 +VG          R++LTKV ++ + +DD YD YGT EELQ+FT  +++
Subjt:  LLAFSKLDFNILQKLHQKKLKEIARWWKDLNV-----------------NVG----------RKILTKVIVISSILDDTYDAYGTFEELQIFTQTIQR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACTAAAAAAAGACCTTCTAAGATTAAAAGCAAGAGAGTACATAACAATGTATCAAGAGATCCTTTTCATTCTCAAACTTTGCTTGCTTTTTCAAAACTGGATTT
TAACATATTACAGAAACTTCACCAAAAGAAGCTGAAGGAAATCGCAAGGTGGTGGAAAGATTTGAACGTCAATGTTGGAAGGAAAATATTAACCAAAGTAATCGTCATTT
CTTCCATTTTAGATGACACATATGATGCCTATGGAACATTTGAAGAACTCCAAATCTTCACTCAAACAATTCAAAGATCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCACTAAAAAAAGACCTTCTAAGATTAAAAGCAAGAGAGTACATAACAATGTATCAAGAGATCCTTTTCATTCTCAAACTTTGCTTGCTTTTTCAAAACTGGATTT
TAACATATTACAGAAACTTCACCAAAAGAAGCTGAAGGAAATCGCAAGGTGGTGGAAAGATTTGAACGTCAATGTTGGAAGGAAAATATTAACCAAAGTAATCGTCATTT
CTTCCATTTTAGATGACACATATGATGCCTATGGAACATTTGAAGAACTCCAAATCTTCACTCAAACAATTCAAAGATCTTAG
Protein sequenceShow/hide protein sequence
MATKKRPSKIKSKRVHNNVSRDPFHSQTLLAFSKLDFNILQKLHQKKLKEIARWWKDLNVNVGRKILTKVIVISSILDDTYDAYGTFEELQIFTQTIQRS