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CmoCh16G008830 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G008830
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description(+)-gamma-cadinene synthase-like
Genome locationCmo_Chr16:4800719..4802060
RNA-Seq ExpressionCmoCh16G008830
SyntenyCmoCh16G008830
Gene Ontology termsGO:0006720 - isoprenoid metabolic process (biological process)
GO:0000287 - magnesium ion binding (molecular function)
GO:0010333 - terpene synthase activity (molecular function)
InterPro domainsIPR005630 - Terpene synthase, metal-binding domain
IPR008949 - Isoprenoid synthase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577414.1 hypothetical protein SDJN03_24988, partial [Cucurbita argyrosperma subsp. sororia]2.5e-2642.4Show/hide
Query:  VKHLKDIIANSRPVFATEVISALKYPLRKVIPRLKAR---------------------------------------------------------------
        VKHLK+II+NS P+F  EV SALKYPLRK IPR+KAR                                                               
Subjt:  VKHLKDIIANSRPVFATEVISALKYPLRKVIPRLKAR---------------------------------------------------------------

Query:  -----------GVERKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHM
                    V RKMLTKV AISSIL  + + +  +   LQ+         +   +WDRSMVNVL EYMKPFY   LDLY+EISKEIDKDESSLH+H+
Subjt:  -----------GVERKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHM

Query:  REEEIKKLAESYIYEAK
         +EEIKKLAESY  EAK
Subjt:  REEEIKKLAESYIYEAK

XP_022933272.1 LOW QUALITY PROTEIN: (+)-gamma-cadinene synthase-like [Cucurbita moschata]4.0e-2441.94Show/hide
Query:  VKHLKDIIANSRPVFATEVISALKYPLRKVIPRLKAR---------------------------------------------------------------
        VKHLK+II+NS P+F  EV SALKYPLRK IPR+KAR                                                               
Subjt:  VKHLKDIIANSRPVFATEVISALKYPLRKVIPRLKAR---------------------------------------------------------------

Query:  -----------GVERKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHM
                    V RKMLTKV AISSIL  + + +  +   LQ+         +   +WDRSMVNVL EYMKPFYI  LDLY+EISKEIDKD SSLH+H+
Subjt:  -----------GVERKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHM

Query:  REEEIKKLAESYIYEAK
          +EIKKLAESY  EAK
Subjt:  REEEIKKLAESYIYEAK

XP_022985144.1 LOW QUALITY PROTEIN: (+)-gamma-cadinene synthase-like [Cucurbita maxima]2.1e-2542.4Show/hide
Query:  VKHLKDIIANSRPVFATEVISALKYPLRKVIPRLKAR---------------------------------------------------------------
        VKHLK+II+NS  +F  EV SALKYPLRK IPR+KAR                                                               
Subjt:  VKHLKDIIANSRPVFATEVISALKYPLRKVIPRLKAR---------------------------------------------------------------

Query:  -----------GVERKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHM
                    V RK+LTKV AISSIL  + + +  +   LQ+    I        +WDRSMVNVL EYMKPFYI  LD+Y+EISKEIDKDESSLHIH+
Subjt:  -----------GVERKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHM

Query:  REEEIKKLAESYIYEAK
         +EEIKKLAESY  EAK
Subjt:  REEEIKKLAESYIYEAK

XP_023520451.1 LOW QUALITY PROTEIN: (+)-gamma-cadinene synthase-like [Cucurbita pepo subsp. pepo]1.6e-2039.17Show/hide
Query:  VKHLKDIIANSRPVFATEVISALKYPLRKVIPRLKAR---------------------------------------------------------------
        VK+L+D+  NS P FA EV SALK+PLRK +PRLKAR                                                               
Subjt:  VKHLKDIIANSRPVFATEVISALKYPLRKVIPRLKAR---------------------------------------------------------------

Query:  -----------GVERKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHM
                   GV RK+LTKVI ISSIL  + + +  +   LQ+F   I        +WDRSMVNVL +YMK FYI  LD++ EISKEI KDESSLHI  
Subjt:  -----------GVERKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHM

Query:  REEEIKKLAESYIYEAK
          E IKKLA+SY  EAK
Subjt:  REEEIKKLAESYIYEAK

XP_023552098.1 (+)-gamma-cadinene synthase-like [Cucurbita pepo subsp. pepo]6.6e-2742.86Show/hide
Query:  VKHLKDIIANSRPVFATEVISALKYPLRKVIPRLKAR---------------------------------------------------------------
        VKHLK+II+NS P+F  EV SALKYPLRK IPR+KAR                                                               
Subjt:  VKHLKDIIANSRPVFATEVISALKYPLRKVIPRLKAR---------------------------------------------------------------

Query:  -----------GVERKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHM
                    V RK+LTKV AISSIL  + + +  +   LQ+    I        +WDRSMVNVL EYMKPFYI  LDLY+EISKEIDKDESSLH+H+
Subjt:  -----------GVERKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHM

Query:  REEEIKKLAESYIYEAK
         +EEIKKLAESY  EAK
Subjt:  REEEIKKLAESYIYEAK

TrEMBL top hitse value%identityAlignment
A0A6J1EZA9 LOW QUALITY PROTEIN: (+)-gamma-cadinene synthase-like1.9e-2441.94Show/hide
Query:  VKHLKDIIANSRPVFATEVISALKYPLRKVIPRLKAR---------------------------------------------------------------
        VKHLK+II+NS P+F  EV SALKYPLRK IPR+KAR                                                               
Subjt:  VKHLKDIIANSRPVFATEVISALKYPLRKVIPRLKAR---------------------------------------------------------------

Query:  -----------GVERKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHM
                    V RKMLTKV AISSIL  + + +  +   LQ+         +   +WDRSMVNVL EYMKPFYI  LDLY+EISKEIDKD SSLH+H+
Subjt:  -----------GVERKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHM

Query:  REEEIKKLAESYIYEAK
          +EIKKLAESY  EAK
Subjt:  REEEIKKLAESYIYEAK

A0A6J1J473 (+)-gamma-cadinene synthase-like isoform X24.2e-1938.59Show/hide
Query:  VKHLKDIIANSRPVFATEVISALKYPLRKVIPRLKARGV------ERKMLTKVIAISSILLMLME--HSKNSKSSLQLFKD--------FINDDVIKFF-
        VKHLK+IIANS      E+  ALK+PLRK +P+LKAR        +      ++A S +   +++  + K  K   + +KD        +  D +++ + 
Subjt:  VKHLKDIIANSRPVFATEVISALKYPLRKVIPRLKARGV------ERKMLTKVIAISSILLMLME--HSKNSKSSLQLFKD--------FINDDVIKFF-

Query:  ------------------------KWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHMREEEIKKLAESYIYEAK
                                +WDRSMV++L EYMKP YI  L+ Y+EISKEI KDE+SLH+H  +EEIKKLA SY  EAK
Subjt:  ------------------------KWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHMREEEIKKLAESYIYEAK

A0A6J1J7F9 (+)-gamma-cadinene synthase-like isoform X11.1e-1937.79Show/hide
Query:  VKHLKDIIANSRPVFATEVISALKYPLRKVIPRLKAR---------------------------------------------------------------
        VKHLK+IIANS      E+  ALK+PLRK +P+LKAR                                                               
Subjt:  VKHLKDIIANSRPVFATEVISALKYPLRKVIPRLKAR---------------------------------------------------------------

Query:  -----------GVERKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHM
                    V RK+LTKVIAISSIL    + +  +   LQ+F + I        +WDRSMV++L EYMKP YI  L+ Y+EISKEI KDE+SLH+H 
Subjt:  -----------GVERKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHM

Query:  REEEIKKLAESYIYEAK
         +EEIKKLA SY  EAK
Subjt:  REEEIKKLAESYIYEAK

A0A6J1JAP8 (+)-gamma-cadinene synthase-like9.3e-1937.33Show/hide
Query:  VKHLKDIIANSRPVFATEVISALKYPLRKVIPRLKAR---------------------------------------------------------------
        VKHLK+IIANS      E+  ALK+PLRK +P+LKAR                                                               
Subjt:  VKHLKDIIANSRPVFATEVISALKYPLRKVIPRLKAR---------------------------------------------------------------

Query:  -----------GVERKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHM
                    + R++LTKVIAISSIL    + +  +   LQ+F   I        +WDRSM+N+L EYMKP Y+  L+LY+EISKEI KDE SLHIH 
Subjt:  -----------GVERKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHM

Query:  REEEIKKLAESYIYEAK
          EEIKKLA SY  EAK
Subjt:  REEEIKKLAESYIYEAK

A0A6J1JCH1 LOW QUALITY PROTEIN: (+)-gamma-cadinene synthase-like1.0e-2542.4Show/hide
Query:  VKHLKDIIANSRPVFATEVISALKYPLRKVIPRLKAR---------------------------------------------------------------
        VKHLK+II+NS  +F  EV SALKYPLRK IPR+KAR                                                               
Subjt:  VKHLKDIIANSRPVFATEVISALKYPLRKVIPRLKAR---------------------------------------------------------------

Query:  -----------GVERKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHM
                    V RK+LTKV AISSIL  + + +  +   LQ+    I        +WDRSMVNVL EYMKPFYI  LD+Y+EISKEIDKDESSLHIH+
Subjt:  -----------GVERKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHM

Query:  REEEIKKLAESYIYEAK
         +EEIKKLAESY  EAK
Subjt:  REEEIKKLAESYIYEAK

SwissProt top hitse value%identityAlignment
B2KSJ5 (+)-gamma-cadinene synthase4.2e-1633.49Show/hide
Query:  HLKDII---ANSRPVFATEVISALKYPLRKVIPRLKAR--------------------------------------------------------------
        HL+  I   +N  P FA+EV +ALK P+RK +PR+KAR                                                              
Subjt:  HLKDII---ANSRPVFATEVISALKYPLRKVIPRLKAR--------------------------------------------------------------

Query:  ------------GVERKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIH
                     V RKMLTKVIAI+SIL  + + +  +   LQ+    I        +WDRSMV+ L  YMKPFY+  L+LY EI KEIDKD++SLH+ 
Subjt:  ------------GVERKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIH

Query:  MREEEIKKLAESYIYEAK
        +    IK+L+ESY  EAK
Subjt:  MREEEIKKLAESYIYEAK

E3W208 Sesquiterpene synthase1.3e-0634.95Show/hide
Query:  RKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHMREEEIKKLAESYIY
        RK++ KV  + S +  + + +  +   L+LF   I        +WD   ++ L EYMKP Y   LD+Y EI +E+D   S   +H  +EE+KK+ E Y+ 
Subjt:  RKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHMREEEIKKLAESYIY

Query:  EAK
        EAK
Subjt:  EAK

F6M8H4 Probable sesquiterpene synthase8.7e-0633.98Show/hide
Query:  RKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHMREEEIKKLAESYIY
        RK++ KV  + S +  + + +  +   L+LF + I        +WD   ++ L EYMKP Y   L++Y EI +E+D   S   +H  +E +KKL E Y+ 
Subjt:  RKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHMREEEIKKLAESYIY

Query:  EAK
        EAK
Subjt:  EAK

F6M8H6 Probable sesquiterpene synthase1.3e-0634.95Show/hide
Query:  RKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHMREEEIKKLAESYIY
        RK++ KV  + S +  + + +  +   L+LF   I        +WD   ++ L EYMKP Y   LD+Y EI +E+D   S   +H  +EE+KK+ E Y+ 
Subjt:  RKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHMREEEIKKLAESYIY

Query:  EAK
        EAK
Subjt:  EAK

Q6Q3H2 Valencene synthase4.2e-0835.92Show/hide
Query:  RKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHMREEEIKKLAESYIY
        R++LTKVIA++SIL  + + +  +   L+LF + I        +WD + +N L EYMK  Y+  LD+Y+EI +E++K+ +   +H  +E +K    +Y  
Subjt:  RKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDLYREISKEIDKDESSLHIHMREEEIKKLAESYIY

Query:  EAK
        EAK
Subjt:  EAK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGTTGTCAAACATCTAAAAGATATTATAGCCAACTCACGCCCCGTTTTTGCAACTGAAGTTATAAGTGCCTTGAAATATCCTTTAAGAAAAGTCATTCCTAGATT
AAAGGCAAGAGGTGTTGAAAGAAAAATGTTAACTAAAGTAATTGCCATTTCTTCAATTTTACTTATGCTTATGGAACATTCGAAGAACTCCAAGTCCTCACTCCAACTAT
TCAAAGATTTTATTAACGATGATGTCATTAAATTTTTCAAGTGGGATAGAAGCATGGTCAATGTACTCCATGAGTACATGAAACCTTTTTATATAGGAAAGTTAGATCTT
TATAGGGAAATTAGTAAAGAGATAGATAAGGATGAAAGTTCACTCCACATTCATATGAGGGAAGAAGAGATAAAGAAACTAGCGGAATCCTACATCTACGAAGCTAAATG
A
mRNA sequenceShow/hide mRNA sequence
ATGAGGGTTGTCAAACATCTAAAAGATATTATAGCCAACTCACGCCCCGTTTTTGCAACTGAAGTTATAAGTGCCTTGAAATATCCTTTAAGAAAAGTCATTCCTAGATT
AAAGGCAAGAGGTGTTGAAAGAAAAATGTTAACTAAAGTAATTGCCATTTCTTCAATTTTACTTATGCTTATGGAACATTCGAAGAACTCCAAGTCCTCACTCCAACTAT
TCAAAGATTTTATTAACGATGATGTCATTAAATTTTTCAAGTGGGATAGAAGCATGGTCAATGTACTCCATGAGTACATGAAACCTTTTTATATAGGAAAGTTAGATCTT
TATAGGGAAATTAGTAAAGAGATAGATAAGGATGAAAGTTCACTCCACATTCATATGAGGGAAGAAGAGATAAAGAAACTAGCGGAATCCTACATCTACGAAGCTAAATG
A
Protein sequenceShow/hide protein sequence
MRVVKHLKDIIANSRPVFATEVISALKYPLRKVIPRLKARGVERKMLTKVIAISSILLMLMEHSKNSKSSLQLFKDFINDDVIKFFKWDRSMVNVLHEYMKPFYIGKLDL
YREISKEIDKDESSLHIHMREEEIKKLAESYIYEAK