; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh16G008840 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G008840
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionLOW QUALITY PROTEIN: (+)-gamma-cadinene synthase-like
Genome locationCmo_Chr16:4802118..4802631
RNA-Seq ExpressionCmoCh16G008840
SyntenyCmoCh16G008840
Gene Ontology termsGO:0016102 - diterpenoid biosynthetic process (biological process)
GO:0045338 - farnesyl diphosphate metabolic process (biological process)
GO:0051762 - sesquiterpene biosynthetic process (biological process)
GO:0000287 - magnesium ion binding (molecular function)
GO:0010334 - sesquiterpene synthase activity (molecular function)
InterPro domainsIPR005630 - Terpene synthase, metal-binding domain
IPR008949 - Isoprenoid synthase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022932164.1 (+)-gamma-cadinene synthase-like [Cucurbita moschata]1.1e-4265Show/hide
Query:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSNITW-QY---KQEGCVKLHKQVVDAWKDVNETCLHLIAV
        GYT  ISIS LGM ++VTNEVL+W+SRRPKI+KAS ++C+LMDDVVSHK EQEREHV S       QY   ++E CV+LHKQVVDAWKD+NE CL+ I V
Subjt:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSNITW-QY---KQEGCVKLHKQVVDAWKDVNETCLHLIAV

Query:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL
        PM ILMR +  SRVIN+LY DEDGYT+ + R K +IES L
Subjt:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL

XP_022933272.1 LOW QUALITY PROTEIN: (+)-gamma-cadinene synthase-like [Cucurbita moschata]1.2e-4973.57Show/hide
Query:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSN-ITWQY---KQEGCVKLHKQVVDAWKDVNETCLHLIAV
        GY+L ISISLLGM NMVTN+VLQWVSRRPKIIK STI+C+LMDD+VSHK EQER+HVAS       QY   ++E CV+LHKQVVDAWKDVNE CLH I V
Subjt:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSN-ITWQY---KQEGCVKLHKQVVDAWKDVNETCLHLIAV

Query:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL
        PMPILMRA+ FSRV+N++YSDEDGYT+SN + KFIIES L
Subjt:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL

XP_022985144.1 LOW QUALITY PROTEIN: (+)-gamma-cadinene synthase-like [Cucurbita maxima]4.4e-4972.86Show/hide
Query:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSN-ITWQY---KQEGCVKLHKQVVDAWKDVNETCLHLIAV
        GY+L ISISLLGM NMVTN+VLQWVSRRPKIIK STI+C+LMDD+VSHK EQEREH+AS       QY   ++E CV+LHKQVVDAWKDVNE CL  IAV
Subjt:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSN-ITWQY---KQEGCVKLHKQVVDAWKDVNETCLHLIAV

Query:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL
        PMPILMR + FSRV+N++YSDEDGYT+SN + KFIIES L
Subjt:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL

XP_023520451.1 LOW QUALITY PROTEIN: (+)-gamma-cadinene synthase-like [Cucurbita pepo subsp. pepo]1.4e-4265Show/hide
Query:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSNITW-QY---KQEGCVKLHKQVVDAWKDVNETCLHLIAV
        GYT  ISIS LGM ++VTNEVL+W+SRRPKI+KAS ++C+LMDDVVSHK EQEREHV S       QY   ++E CV+LHKQVVDAWKD+NE CL+ I V
Subjt:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSNITW-QY---KQEGCVKLHKQVVDAWKDVNETCLHLIAV

Query:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL
        PM ILMR +  SRVIN+LY DEDGYT+ + R K +IES L
Subjt:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL

XP_023552098.1 (+)-gamma-cadinene synthase-like [Cucurbita pepo subsp. pepo]1.3e-4872.86Show/hide
Query:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSN-ITWQY---KQEGCVKLHKQVVDAWKDVNETCLHLIAV
        GY+L ISISLL M NMVTN+VLQWVSRRPKII+ STI+C+LMDD+VSHK EQEREHVAS       QY   ++E CV+LHKQVVDAWKDVNE CLH IAV
Subjt:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSN-ITWQY---KQEGCVKLHKQVVDAWKDVNETCLHLIAV

Query:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL
        PMPILMR + FSRV+N++YSDEDGYT+SN + KFIIES L
Subjt:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL

TrEMBL top hitse value%identityAlignment
A0A6J1EW93 (+)-gamma-cadinene synthase-like5.1e-4365Show/hide
Query:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSNITW-QY---KQEGCVKLHKQVVDAWKDVNETCLHLIAV
        GYT  ISIS LGM ++VTNEVL+W+SRRPKI+KAS ++C+LMDDVVSHK EQEREHV S       QY   ++E CV+LHKQVVDAWKD+NE CL+ I V
Subjt:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSNITW-QY---KQEGCVKLHKQVVDAWKDVNETCLHLIAV

Query:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL
        PM ILMR +  SRVIN+LY DEDGYT+ + R K +IES L
Subjt:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL

A0A6J1EZA9 LOW QUALITY PROTEIN: (+)-gamma-cadinene synthase-like5.6e-5073.57Show/hide
Query:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSN-ITWQY---KQEGCVKLHKQVVDAWKDVNETCLHLIAV
        GY+L ISISLLGM NMVTN+VLQWVSRRPKIIK STI+C+LMDD+VSHK EQER+HVAS       QY   ++E CV+LHKQVVDAWKDVNE CLH I V
Subjt:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSN-ITWQY---KQEGCVKLHKQVVDAWKDVNETCLHLIAV

Query:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL
        PMPILMRA+ FSRV+N++YSDEDGYT+SN + KFIIES L
Subjt:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL

A0A6J1J7F9 (+)-gamma-cadinene synthase-like isoform X11.9e-4262.86Show/hide
Query:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSN-ITWQY---KQEGCVKLHKQVVDAWKDVNETCLHLIAV
        GY   IS++L+GM ++VTN++L+W  R+PKII ASTI+C+LMDD+VS K EQEREHV SG      QY   ++E C++LHKQVVDAWKD+NE CLH I V
Subjt:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSN-ITWQY---KQEGCVKLHKQVVDAWKDVNETCLHLIAV

Query:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL
        PMPILMR +  SRVIN+LY+DEDGYT++N R KF+IES L
Subjt:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL

A0A6J1JAP8 (+)-gamma-cadinene synthase-like6.6e-4362.86Show/hide
Query:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSNITW-QY---KQEGCVKLHKQVVDAWKDVNETCLHLIAV
        GY+L ISISL+GM ++VTN+V++W  +RPK++KA+TI+ +LMDD+VSHK EQ+REHVAS       QY   + E C++LHKQVVDAWKD+NE CLH I V
Subjt:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSNITW-QY---KQEGCVKLHKQVVDAWKDVNETCLHLIAV

Query:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL
        PMPILMR +  SRVIN+LY+DEDGYT++N R KF+IES L
Subjt:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL

A0A6J1JCH1 LOW QUALITY PROTEIN: (+)-gamma-cadinene synthase-like2.1e-4972.86Show/hide
Query:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSN-ITWQY---KQEGCVKLHKQVVDAWKDVNETCLHLIAV
        GY+L ISISLLGM NMVTN+VLQWVSRRPKIIK STI+C+LMDD+VSHK EQEREH+AS       QY   ++E CV+LHKQVVDAWKDVNE CL  IAV
Subjt:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSN-ITWQY---KQEGCVKLHKQVVDAWKDVNETCLHLIAV

Query:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL
        PMPILMR + FSRV+N++YSDEDGYT+SN + KFIIES L
Subjt:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL

SwissProt top hitse value%identityAlignment
B2KSJ5 (+)-gamma-cadinene synthase1.6e-4160.99Show/hide
Query:  GYTLFISISLLGM-DNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSNITW-QY---KQEGCVKLHKQVVDAWKDVNETCLHLIA
        GYT+ ISIS LG+ D++VTNEVLQW+S  P+IIKASTI+C+LMDD+ SHK EQEREHVAS       QY   ++E C++LHK+VVDAWKD NE       
Subjt:  GYTLFISISLLGM-DNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSNITW-QY---KQEGCVKLHKQVVDAWKDVNETCLHLIA

Query:  VPMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL
        VP+P+LMR + FSRVIN+LY DEDGYT++ S  KF+I+S L
Subjt:  VPMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL

B5A435 Sesquiterpene synthase5.8e-2847.14Show/hide
Query:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSNITW-QY---KQEGCVKLHKQVVDAWKDVNETCLHLIAV
        GYT   +IS LGM  + + E   W+   P +I+AS  VC+LMDD+ SHK EQER HVASG      QY   ++E   +  KQ+V AWKD+NE CL    V
Subjt:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSNITW-QY---KQEGCVKLHKQVVDAWKDVNETCLHLIAV

Query:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL
        P P+LMR +  +RVI+++Y +EDGYTH     K  I S L
Subjt:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL

B9S9Z3 Alpha-copaene synthase3.8e-2746.46Show/hide
Query:  SLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSNI---TWQYKQEGCVKL-HKQVVDAWKDVNETCLHLIAVPMPILMRA
        S LG+  + T E  +W S  PKII+AS+IVC+LMDD+VSH+ EQ R+HVASG       +   +E  +KL  K+V +AWKD+NE CL+   VPMP+L R 
Subjt:  SLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSNI---TWQYKQEGCVKL-HKQVVDAWKDVNETCLHLIAVPMPILMRA

Query:  IIFSRVINILYSDEDGYTHSNSRAKFI
        +  +R I+++Y D+DGYT+S+    ++
Subjt:  IIFSRVINILYSDEDGYTHSNSRAKFI

F6M8H6 Probable sesquiterpene synthase9.9e-2847.14Show/hide
Query:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSNITW-QY---KQEGCVKLHKQVVDAWKDVNETCLHLIAV
        GYT   +IS LGM  + + E   W+  RP II+AS  VC+LMDD+ SH+ EQER HVASG      QY   ++E   K HK++V AWKD+NE CL    +
Subjt:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSNITW-QY---KQEGCVKLHKQVVDAWKDVNETCLHLIAV

Query:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL
        P P+LMR +  +RVI+++Y +ED YTH     K  I S L
Subjt:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL

Q6Q3H3 (-)-germacrene D synthase1.3e-2745.32Show/hide
Query:  YTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSNITWQY----KQEGCVKLHKQVVDAWKDVNETCLHLIAVP
        Y++  + S +GM + VT E   W+  +PKI++AS IVC+LMDD+V HK EQ+R HVAS      +     +QE   +  + V +AWKD+NE CL   AVP
Subjt:  YTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSNITWQY----KQEGCVKLHKQVVDAWKDVNETCLHLIAVP

Query:  MPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL
        MPILMR +  +RVI+++Y +EDGYTH  +  K  + S L
Subjt:  MPILMRAIIFSRVINILYSDEDGYTHSNSRAKFIIESFL

Arabidopsis top hitse value%identityAlignment
AT1G48800.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein1.9e-1334.88Show/hide
Query:  LLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSN-ITWQY---KQEGCVKLHKQVVDAWKDVNETCLHLIAVPMPILMRAI
        LLGM+N+   E  +W+  R K+++A +   +L++D+  +K +  R +V +  N    QY   ++E   KLH+ V D  K +NE  L  I VP  +L   +
Subjt:  LLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSN-ITWQY---KQEGCVKLHKQVVDAWKDVNETCLHLIAVPMPILMRAI

Query:  IFSRVINILYSDEDGYTHSNSRAKFIIES
           R INI Y +EDG+T  N   K  I S
Subjt:  IFSRVINILYSDEDGYTHSNSRAKFIIES

AT4G13300.1 terpenoid synthase 137.8e-1231.58Show/hide
Query:  SLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSNITWQY----KQEGCVKLHKQVVDAWKDVNETCLHLIAVPMPILMRA
        S +GM   V  E  +WV  RP++IK+     +LMDD+   + +      A+  N   +     K+E  ++  K VVD  K VNE  L    VP  +L +A
Subjt:  SLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSNITWQY----KQEGCVKLHKQVVDAWKDVNETCLHLIAVPMPILMRA

Query:  IIFSRVINILYS-DEDGYTHSNSRAKFIIESFL
        + F R++ +LY+  +D Y  S  + K  I + L
Subjt:  IIFSRVINILYS-DEDGYTHSNSRAKFIIESFL

AT5G23960.1 terpene synthase 211.6e-1733.82Show/hide
Query:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSNITWQ---YKQEGCVKLHKQVV-DAWKDVNETCLHLIAV
        GY   I+++ + M ++   +  +W+S  PKI  AS I+ +  DD+ S++ E +REHVA+G +   Q     +E  V++   +V DAWKD+N+  +     
Subjt:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSNITWQ---YKQEGCVKLHKQVV-DAWKDVNETCLHLIAV

Query:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFII
        P P+LMR +  SRVI++ Y  +D YT+     + I+
Subjt:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFII

AT5G23960.2 terpene synthase 211.6e-1733.82Show/hide
Query:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSNITWQ---YKQEGCVKLHKQVV-DAWKDVNETCLHLIAV
        GY   I+++ + M ++   +  +W+S  PKI  AS I+ +  DD+ S++ E +REHVA+G +   Q     +E  V++   +V DAWKD+N+  +     
Subjt:  GYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSNITWQ---YKQEGCVKLHKQVV-DAWKDVNETCLHLIAV

Query:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFII
        P P+LMR +  SRVI++ Y  +D YT+     + I+
Subjt:  PMPILMRAIIFSRVINILYSDEDGYTHSNSRAKFII

AT5G44630.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein2.4e-1328.91Show/hide
Query:  ISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSNITWQ----YKQEGCVKLHKQVVDAWKDVNETCLHLIAVPMPIL
        I+ S++G+  +   E  +W+  RPK+++      +LMDD+   + + E+ + A+  N         K+E   +L K   D  K VNE CL +  +P  IL
Subjt:  ISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSNITWQ----YKQEGCVKLHKQVVDAWKDVNETCLHLIAVPMPIL

Query:  MRAIIFSRVINILYSDEDGYTHSNSRAK
        M+++ ++R +++LY+ +D Y H   + K
Subjt:  MRAIIFSRVINILYSDEDGYTHSNSRAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTATACCCTGTTTATAAGCATTTCACTACTTGGCATGGACAACATGGTAACCAATGAGGTACTTCAATGGGTTTCTAGAAGACCTAAAATTATTAAAGCCTCAAC
AATCGTTTGTAAACTCATGGACGATGTCGTTTCCCACAAGGTTGAGCAAGAAAGGGAACATGTTGCTTCTGGGTCGAATATTACATGGCAATATAAGCAAGAAGGTTGTG
TTAAACTTCATAAGCAAGTGGTTGATGCATGGAAGGACGTAAATGAAACATGTCTTCATCTAATTGCTGTTCCAATGCCCATTTTAATGCGGGCAATAATATTTTCAAGA
GTTATTAACATACTTTATTCGGACGAGGATGGATATACACATTCAAATAGCAGAGCAAAATTTATTATCGAATCTTTTCTG
mRNA sequenceShow/hide mRNA sequence
ATGGGTTATACCCTGTTTATAAGCATTTCACTACTTGGCATGGACAACATGGTAACCAATGAGGTACTTCAATGGGTTTCTAGAAGACCTAAAATTATTAAAGCCTCAAC
AATCGTTTGTAAACTCATGGACGATGTCGTTTCCCACAAGGTTGAGCAAGAAAGGGAACATGTTGCTTCTGGGTCGAATATTACATGGCAATATAAGCAAGAAGGTTGTG
TTAAACTTCATAAGCAAGTGGTTGATGCATGGAAGGACGTAAATGAAACATGTCTTCATCTAATTGCTGTTCCAATGCCCATTTTAATGCGGGCAATAATATTTTCAAGA
GTTATTAACATACTTTATTCGGACGAGGATGGATATACACATTCAAATAGCAGAGCAAAATTTATTATCGAATCTTTTCTG
Protein sequenceShow/hide protein sequence
MGYTLFISISLLGMDNMVTNEVLQWVSRRPKIIKASTIVCKLMDDVVSHKVEQEREHVASGSNITWQYKQEGCVKLHKQVVDAWKDVNETCLHLIAVPMPILMRAIIFSR
VINILYSDEDGYTHSNSRAKFIIESFL