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CmoCh16G008890 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G008890
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRibosomal protein S13
Genome locationCmo_Chr16:4976159..4977508
RNA-Seq ExpressionCmoCh16G008890
SyntenyCmoCh16G008890
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001892 - Ribosomal protein S13
IPR010979 - Ribosomal protein S13-like, H2TH


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AEN56112.1 ribosomal protein S13 [Cucumis melo subsp. melo]2.7e-3491.95Show/hide
Query:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY
        M YISGARSVADKQVRIAST+IDGIGPKKAI+VRY+LGISGNIKIKELTK QIDQIEQMIGQDHIVH ELKRGERADIER ISLSCY
Subjt:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY

AUD38526.1 ribosomal protein S13 [Guettarda scabra]2.0e-3490.8Show/hide
Query:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY
        M YISGARSVADKQVRIASTKIDGIGPKKAI+VRY+LGISGNIKIKELTK QIDQIEQMIGQDH+VH ELKRGERADIER+IS+SCY
Subjt:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY

GEW97726.1 ribosomal protein S13, mitochondrial [Tanacetum cinerariifolium]3.8e-4971.1Show/hide
Query:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY--LIKMDCPYAVN
        M YISGARSVAD+QVRIASTKIDGIGPKKAI VRY+LGISGNIKIKELTK QIDQIEQMI Q H+VH ELKRGERADIER+IS+SCY  +   D     +
Subjt:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY--LIKMDCPYAVN

Query:  KLILMLGLIASEFGNEISLPK--KPLDEPADPNIIYEEPDDEASSSDKDVSDATLPARTTF--YIVIAGPVRS
         LILMLGL+AS+FGN+ SLPK     D PA P+IIYEEP+D+ SSS+KDVSDATL A  TF  YI +   VRS
Subjt:  KLILMLGLIASEFGNEISLPK--KPLDEPADPNIIYEEPDDEASSSDKDVSDATLPARTTF--YIVIAGPVRS

YP_003587349.1 ribosomal protein S13 [Cucurbita pepo]1.2e-3493.1Show/hide
Query:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY
        MPYISGAR VADKQVRIA TKIDGIGPKKAI+V Y+LGISGNIKIKELTKSQIDQIEQMIGQDHIVH ELKRGERADIERVISLSCY
Subjt:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY

YP_009913633.1 ribosomal protein S13 [Luffa acutangula]1.6e-3491.95Show/hide
Query:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY
        M YISGARSVADKQVRIASTKIDGIGPKKAI+VRY+LGISGNIKIKELTK QIDQIEQMIGQDHIVH ELKRGERADIER IS+SCY
Subjt:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY

TrEMBL top hitse value%identityAlignment
A0A2H4WYX4 Ribosomal protein S139.9e-3590.8Show/hide
Query:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY
        M YISGARSVADKQVRIASTKIDGIGPKKAI+VRY+LGISGNIKIKELTK QIDQIEQMIGQDH+VH ELKRGERADIER+IS+SCY
Subjt:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY

A0A3S9JII2 Ribosomal protein S131.3e-3491.95Show/hide
Query:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY
        M YISGARSVADKQVRIAST+IDGIGPKKAI+VRY+LGISGNIKIKELTK QIDQIEQMIGQDHIVH ELKRGERADIER ISLSCY
Subjt:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY

A0A7D6C5F5 Ribosomal protein S137.6e-3591.95Show/hide
Query:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY
        M YISGARSVADKQVRIASTKIDGIGPKKAI+VRY+LGISGNIKIKELTK QIDQIEQMIGQDHIVH ELKRGERADIER IS+SCY
Subjt:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY

D5I3H3 Ribosomal protein S135.8e-3593.1Show/hide
Query:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY
        MPYISGAR VADKQVRIA TKIDGIGPKKAI+V Y+LGISGNIKIKELTKSQIDQIEQMIGQDHIVH ELKRGERADIERVISLSCY
Subjt:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY

G3EU28 Ribosomal protein S131.3e-3491.95Show/hide
Query:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY
        M YISGARSVADKQVRIAST+IDGIGPKKAI+VRY+LGISGNIKIKELTK QIDQIEQMIGQDHIVH ELKRGERADIER ISLSCY
Subjt:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY

SwissProt top hitse value%identityAlignment
P05488 Ribosomal protein S13, mitochondrial1.1e-3587.36Show/hide
Query:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY
        M YISGAR V D+QVRIASTKIDGIGPKKAI+VRY+LGISGNIKIKELTK QIDQIEQMIGQDH+VH ELKRGERADIER+IS+SCY
Subjt:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY

P07924 Ribosomal protein S13, mitochondrial2.0e-3280.46Show/hide
Query:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY
        M YISGARS+ D+QVRIASTK+DGIGPKKAI++RY+LGISGNIK+ ELTK QIDQIEQMI QDH+VH ELKRGERADIER+IS+S Y
Subjt:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY

P08977 Ribosomal protein S13, mitochondrial1.2e-3281.61Show/hide
Query:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY
        M YISGARS+ D+QVRIASTK+DGIGPKKAI++RY+LGISGNIKI ELTK QIDQIEQMI QDH+VH ELKRGERADIER+IS+S Y
Subjt:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY

P15758 Ribosomal protein S13, mitochondrial1.1e-3081.61Show/hide
Query:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY
        M YISGAR VAD+QVRIASTK+DGIGPKKAI+VR +LG  GNIK KELTK QIDQIEQM GQDH+VH ELKRGERADIER IS+SCY
Subjt:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY

P23209 Ribosomal protein S13, mitochondrial5.2e-3383.91Show/hide
Query:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY
        M YISGAR VADKQVRIA TK+ GIGPKKAI+V Y+LGISGNIKIKELTK QIDQ+EQMIGQDH+VH ELKRGERADIER IS+SCY
Subjt:  MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCY

Arabidopsis top hitse value%identityAlignment
ATMG01130.1 hypothetical protein2.3e-0783.33Show/hide
Query:  EEPDDEASSSDKDVSDATLPARTTFYIVI--AGPVR
        +EPDDEASSSDKDVSDATLPARTT+ IVI  AG VR
Subjt:  EEPDDEASSSDKDVSDATLPARTTFYIVI--AGPVR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATATATTTCAGGAGCTAGATCAGTTGCCGATAAACAAGTCAGAATTGCCTCAACCAAAATTGATGGAATTGGACCTAAAAAAGCCATTAAGGTTCGTTATCAATT
AGGTATCAGTGGGAACATCAAGATCAAAGAGTTAACTAAGTCTCAGATCGACCAAATTGAACAAATGATAGGTCAAGATCATATTGTTCATTTGGAATTGAAGAGGGGAG
AACGAGCAGACATCGAACGAGTCATTTCTCTTTCTTGTTATCTCATCAAGATGGATTGCCCTTACGCGGTCAACAAACTCATACTAATGCTAGGACTTATCGCAAGCGAA
TTCGGAAATGAAATCAGTCTACCGAAAAAGCCCTTGGATGAGCCGGCTGATCCTAACATCATTTATGAGGAGCCAGACGATGAAGCCTCCTCCTCAGATAAAGATGTCTC
CGATGCGACTCTCCCGGCAAGAACCACTTTTTATATTGTGATTGCGGGTCCGGTCAGGAGCATTACGATCTGCAGCTCAAATGTACCTTATGAAGTCTCTATTGGTCTTA
TTCTTATTGTGCGCCTTGTGAGCGTGTTTGGATCCGCGAAGGCAATCGCTCAGATATTCTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCATATATTTCAGGAGCTAGATCAGTTGCCGATAAACAAGTCAGAATTGCCTCAACCAAAATTGATGGAATTGGACCTAAAAAAGCCATTAAGGTTCGTTATCAATT
AGGTATCAGTGGGAACATCAAGATCAAAGAGTTAACTAAGTCTCAGATCGACCAAATTGAACAAATGATAGGTCAAGATCATATTGTTCATTTGGAATTGAAGAGGGGAG
AACGAGCAGACATCGAACGAGTCATTTCTCTTTCTTGTTATCTCATCAAGATGGATTGCCCTTACGCGGTCAACAAACTCATACTAATGCTAGGACTTATCGCAAGCGAA
TTCGGAAATGAAATCAGTCTACCGAAAAAGCCCTTGGATGAGCCGGCTGATCCTAACATCATTTATGAGGAGCCAGACGATGAAGCCTCCTCCTCAGATAAAGATGTCTC
CGATGCGACTCTCCCGGCAAGAACCACTTTTTATATTGTGATTGCGGGTCCGGTCAGGAGCATTACGATCTGCAGCTCAAATGTACCTTATGAAGTCTCTATTGGTCTTA
TTCTTATTGTGCGCCTTGTGAGCGTGTTTGGATCCGCGAAGGCAATCGCTCAGATATTCTCCTAA
Protein sequenceShow/hide protein sequence
MPYISGARSVADKQVRIASTKIDGIGPKKAIKVRYQLGISGNIKIKELTKSQIDQIEQMIGQDHIVHLELKRGERADIERVISLSCYLIKMDCPYAVNKLILMLGLIASE
FGNEISLPKKPLDEPADPNIIYEEPDDEASSSDKDVSDATLPARTTFYIVIAGPVRSITICSSNVPYEVSIGLILIVRLVSVFGSAKAIAQIFS