; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh16G009040 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G009040
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein LHCP TRANSLOCATION DEFECT
Genome locationCmo_Chr16:5402643..5403758
RNA-Seq ExpressionCmoCh16G009040
SyntenyCmoCh16G009040
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0090391 - granum assembly (biological process)
GO:0009570 - chloroplast stroma (cellular component)
GO:0009941 - chloroplast envelope (cellular component)
InterPro domainsIPR036770 - Ankyrin repeat-containing domain superfamily
IPR044242 - Protein LHCP TRANSLOCATION DEFECT-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577428.1 Protein LHCP TRANSLOCATION DEFECT, partial [Cucurbita argyrosperma subsp. sororia]6.6e-8798.82Show/hide
Query:  MASVSCTSTSINLSPTSLNSRPPLKLG-SQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD
        MASVSCTSTSINLSPTS NSRPPLKLG SQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD
Subjt:  MASVSCTSTSINLSPTSLNSRPPLKLG-SQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD

Query:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
        KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
Subjt:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL

KAG7015501.1 Protein LHCP TRANSLOCATION DEFECT [Cucurbita argyrosperma subsp. argyrosperma]5.6e-8698.24Show/hide
Query:  MASVSCTSTSINLSPTSLNSRPPLKLG-SQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD
        MASVSCTSTSINLSPTS NSRP LKLG SQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD
Subjt:  MASVSCTSTSINLSPTSLNSRPPLKLG-SQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD

Query:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
        KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
Subjt:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL

XP_022932181.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita moschata]9.2e-89100Show/hide
Query:  MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDK
        MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL

XP_022985270.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima]1.0e-8798.82Show/hide
Query:  MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDK
        MASVSCTSTSINLSP S NSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL

XP_023520446.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita pepo subsp. pepo]1.7e-8798.22Show/hide
Query:  MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDK
        MASVSCTSTSINLSPTS NSRPPLKLGSQFLGLQSN RWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
        MEALLSQDIHPVDILLMLAASEGDKPKLEELL+AGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL

TrEMBL top hitse value%identityAlignment
A0A0A0L309 ANK_REP_REGION domain-containing protein3.2e-7989.88Show/hide
Query:  MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCTS SINL+P S NSRPP KLGS FLGLQSNLRW+SP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA N+EIKDFILNFS +K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK

A0A1S3CJ75 protein LHCP TRANSLOCATION DEFECT7.8e-7889.29Show/hide
Query:  MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P S NSRPP KL S FLGLQSNLRW+SP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDRA N+EIKDFIL FS +K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK

A0A5D3BT07 Protein LHCP TRANSLOCATION DEFECT7.8e-7889.29Show/hide
Query:  MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P S NSRPP KL S FLGLQSNLRW+SP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDRA N+EIKDFIL FS +K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK

A0A6J1EVN2 protein LHCP TRANSLOCATION DEFECT4.4e-89100Show/hide
Query:  MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDK
        MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL

A0A6J1JAV9 protein LHCP TRANSLOCATION DEFECT4.9e-8898.82Show/hide
Query:  MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDK
        MASVSCTSTSINLSP S NSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL

SwissProt top hitse value%identityAlignment
A2YLX7 Protein LHCP TRANSLOCATION DEFECT1.3e-4561.76Show/hide
Query:  MASVSCT----STSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL-RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVE
        MAS+ CT    + + + S  +   R P    +  LG     R  + +    S     TC+F    ++AEGAGIYGSQ RDDF RDDVEQYFNYMGMLAVE
Subjt:  MASVSCT----STSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL-RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVE

Query:  GTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFS
        GTYDKMEALL+QDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTA+DRA + + ++FIL F+
Subjt:  GTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFS

A3BKF2 Protein LHCP TRANSLOCATION DEFECT1.3e-4561.76Show/hide
Query:  MASVSCT----STSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL-RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVE
        MAS+ CT    + + + S  +   R P    +  LG     R  + +    S     TC+F    ++AEGAGIYGSQ RDDF RDDVEQYFNYMGMLAVE
Subjt:  MASVSCT----STSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL-RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVE

Query:  GTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFS
        GTYDKMEALL+QDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTA+DRA + + ++FIL F+
Subjt:  GTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFS

Q8VY88 Protein LHCP TRANSLOCATION DEFECT2.9e-5365.09Show/hide
Query:  SVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD
        S SC + S+  S  S  S  P  L S+FLG ++    + P  +GPSNGSR TCWF   +N   AE AGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTY 
Subjt:  SVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD

Query:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK
        KMEALL+ +IHPVDILLMLAA+EGD+PK+EELL+AGA Y VKD DGRTAIDRA ++EI+D IL +S +K
Subjt:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK

Arabidopsis top hitse value%identityAlignment
AT1G50900.1 Ankyrin repeat family protein2.1e-5465.09Show/hide
Query:  SVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD
        S SC + S+  S  S  S  P  L S+FLG ++    + P  +GPSNGSR TCWF   +N   AE AGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTY 
Subjt:  SVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD

Query:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK
        KMEALL+ +IHPVDILLMLAA+EGD+PK+EELL+AGA Y VKD DGRTAIDRA ++EI+D IL +S +K
Subjt:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCGTCTCCTGTACTTCTACCTCCATAAATCTCTCCCCAACATCCCTCAATTCTCGCCCCCCACTCAAATTGGGTTCCCAGTTTCTCGGTCTTCAATCCAACCT
CCGATGGGTCTCACCCATCGCCATTGGACCCTCCAACGGCTCTAGAGCAACCTGCTGGTTCAACCTTAGGCAAAATGCGGAAGGTGCAGGCATTTATGGCAGCCAGTCCC
GAGACGACTTCATCAGAGACGATGTTGAGCAGTATTTCAACTACATGGGGATGCTGGCTGTGGAGGGTACGTATGACAAAATGGAGGCTCTATTGAGCCAAGACATTCAC
CCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAGCTTGAGGAGCTATTGAGAGCTGGGGCTAAGTATGATGTGAAAGATGTAGATGGCCGAAC
CGCCATTGATAGGGCACCTAATCAAGAAATCAAGGATTTTATTCTTAATTTTTCTGTTGAGAAGCTATGA
mRNA sequenceShow/hide mRNA sequence
CCCACAATCCCATTATTGGCCCACTGGATTCCGAGTGGATGGATAGAATCTGCAACACACTGCCAGAGCAAAACCTCATCTTCCTCTTACAAAACTTGCAAAAACTCAGC
CATGGCTTCCGTCTCCTGTACTTCTACCTCCATAAATCTCTCCCCAACATCCCTCAATTCTCGCCCCCCACTCAAATTGGGTTCCCAGTTTCTCGGTCTTCAATCCAACC
TCCGATGGGTCTCACCCATCGCCATTGGACCCTCCAACGGCTCTAGAGCAACCTGCTGGTTCAACCTTAGGCAAAATGCGGAAGGTGCAGGCATTTATGGCAGCCAGTCC
CGAGACGACTTCATCAGAGACGATGTTGAGCAGTATTTCAACTACATGGGGATGCTGGCTGTGGAGGGTACGTATGACAAAATGGAGGCTCTATTGAGCCAAGACATTCA
CCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAGCTTGAGGAGCTATTGAGAGCTGGGGCTAAGTATGATGTGAAAGATGTAGATGGCCGAA
CCGCCATTGATAGGGCACCTAATCAAGAAATCAAGGATTTTATTCTTAATTTTTCTGTTGAGAAGCTATGATTTGGTTGGTAAGTGGCTCTGTTTTGGGATAGGCTTAGA
AAGAGGTTTAAGCTTTGTATTTCACTGCCTTCTGATGTTAATCACAATATGGTACACTTGTTTTTGGAGTATTTTGAATGACTAGTAATGATCTTTGGCTTTCATTTTCT
CTCAGAATGTTGATAAACATCATAGACAAGTTCAGAAAACAAG
Protein sequenceShow/hide protein sequence
MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIH
PVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL