CuGenDBv2

Gene ID	CmoCh16G009190
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1
Genome location	Cmo_Chr16:5556164..5556805
RNA-Seq Expression	CmoCh16G009190
Synteny	CmoCh16G009190
Gene Ontology terms	GO:0010258 - NADH dehydrogenase complex (plastoquinone) assembly (biological process) GO:0009570 - chloroplast stroma (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004152910.2 uncharacterized protein LOC101210146 [Cucumis sativus]

4.5e-93

84.98

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Query:  MACLHLHLLCAPNPLLLLPRSQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKPEPPNFEIGW
        MA  HLH L  PNP+LLLP+S P+FT PLQIT KR LS+KC+S+ SESDPNFPSP+P+FGALNQPE+FPIEKRRRS+I+RQR+PS +I KPEPPNFEIGW
Subjt:  MACLHLHLLCAPNPLLLLPRSQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKPEPPNFEIGW

Query:  KRTKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAVKDETLSERLAQAK
        KRTKEI++EKP+GWMIMDFLEKLE LMEREFGSTELLAKVGEIVAERAREEAEIL DDGKVE+RMVTELFRVLKLMEMDLAMVKAAVKDETLSERL QAK
Subjt:  KRTKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAVKDETLSERLAQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

XP_022932131.1 uncharacterized protein LOC111438454 [Cucurbita moschata]

3.1e-110

100

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Query:  MACLHLHLLCAPNPLLLLPRSQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKPEPPNFEIGW
        MACLHLHLLCAPNPLLLLPRSQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKPEPPNFEIGW
Subjt:  MACLHLHLLCAPNPLLLLPRSQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKPEPPNFEIGW

Query:  KRTKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAVKDETLSERLAQAK
        KRTKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAVKDETLSERLAQAK
Subjt:  KRTKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAVKDETLSERLAQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

XP_022985263.1 uncharacterized protein LOC111483306 [Cucurbita maxima]

3.2e-107

96.24

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Query:  MACLHLHLLCAPNPLLLLPRSQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKPEPPNFEIGW
        MACLHLH+LCAPNPLLLLP+SQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSP+PDFGALNQPESFP+EKRRRSEIVRQRRPSK+IVKPEPPNFEIGW
Subjt:  MACLHLHLLCAPNPLLLLPRSQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKPEPPNFEIGW

Query:  KRTKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAVKDETLSERLAQAK
        KRTKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAV+DETL++RLAQAK
Subjt:  KRTKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAVKDETLSERLAQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

XP_023520419.1 uncharacterized protein LOC111783811 isoform X1 [Cucurbita pepo subsp. pepo]

1.4e-102

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Query:  MACLHLHLLCAPNPLLLLPRSQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKPEPPNFEIGW
        MACLHLHLLCAPNPLLLLP+SQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKP+PPNFEIGW
Subjt:  MACLHLHLLCAPNPLLLLPRSQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKPEPPNFEIGW

Query:  KRTKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAVKDETLSERLAQAK
        KRTKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAVKDETLSERLAQAK
Subjt:  KRTKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAVKDETLSERLAQAK

Query:  A
        A
Subjt:  A

XP_023520420.1 uncharacterized protein LOC111783811 isoform X2 [Cucurbita pepo subsp. pepo]

1.4e-102

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Query:  MACLHLHLLCAPNPLLLLPRSQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKPEPPNFEIGW
        MACLHLHLLCAPNPLLLLP+SQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKP+PPNFEIGW
Subjt:  MACLHLHLLCAPNPLLLLPRSQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKPEPPNFEIGW

Query:  KRTKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAVKDETLSERLAQAK
        KRTKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAVKDETLSERLAQAK
Subjt:  KRTKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAVKDETLSERLAQAK

Query:  A
        A
Subjt:  A

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L6D8 Uncharacterized protein

2.2e-93

84.98

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Query:  MACLHLHLLCAPNPLLLLPRSQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKPEPPNFEIGW
        MA  HLH L  PNP+LLLP+S P+FT PLQIT KR LS+KC+S+ SESDPNFPSP+P+FGALNQPE+FPIEKRRRS+I+RQR+PS +I KPEPPNFEIGW
Subjt:  MACLHLHLLCAPNPLLLLPRSQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKPEPPNFEIGW

Query:  KRTKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAVKDETLSERLAQAK
        KRTKEI++EKP+GWMIMDFLEKLE LMEREFGSTELLAKVGEIVAERAREEAEIL DDGKVE+RMVTELFRVLKLMEMDLAMVKAAVKDETLSERL QAK
Subjt:  KRTKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAVKDETLSERLAQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

A0A1S3BT06 uncharacterized protein LOC103493403

2.4e-92

84.98

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Query:  MACLHLHLLCAPNPLLLLPRSQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKPEPPNFEIGW
        MA  HLH L  PNP+LLLP+S P+FT PLQIT KR LS+K +S+ SESDPNFPSP+P+F ALNQPE+FPIEKRRRSEI+RQR+P+ +I KPEPPNFEIGW
Subjt:  MACLHLHLLCAPNPLLLLPRSQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKPEPPNFEIGW

Query:  KRTKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAVKDETLSERLAQAK
        KRTKEINLEKP+GWMIMDFLEKLE LMEREFGSTELLAKVGEIVAERAREEAEIL DDGKVE+RMVTELFRVLKLMEMDLAMVKAAVKDETLSERL QAK
Subjt:  KRTKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAVKDETLSERLAQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

A0A5D3C0F1 Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1

4.1e-92

84.98

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Query:  MACLHLHLLCAPNPLLLLPRSQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKPEPPNFEIGW
        MA  HLH L  PNP+LLLP+S P+FT PLQIT KR LS+K +S+ SESDPNFPSP+P F ALNQPE+FPIEKRRRSEI+RQR+P+ +I KPEPPNFEIGW
Subjt:  MACLHLHLLCAPNPLLLLPRSQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKPEPPNFEIGW

Query:  KRTKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAVKDETLSERLAQAK
        KRTKEINLEKP+GWMIMDFLEKLE LMEREFGSTELLAKVGEIVAERAREEAEIL DDGKVE+RMVTELFRVLKLMEMDLAMVKAAVKDETLSERL QAK
Subjt:  KRTKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAVKDETLSERLAQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

A0A6J1EVI2 uncharacterized protein LOC111438454

1.5e-110

100

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Query:  MACLHLHLLCAPNPLLLLPRSQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKPEPPNFEIGW
        MACLHLHLLCAPNPLLLLPRSQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKPEPPNFEIGW
Subjt:  MACLHLHLLCAPNPLLLLPRSQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKPEPPNFEIGW

Query:  KRTKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAVKDETLSERLAQAK
        KRTKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAVKDETLSERLAQAK
Subjt:  KRTKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAVKDETLSERLAQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

A0A6J1JD53 uncharacterized protein LOC111483306

1.6e-107

96.24

Show/hide

Query:  MACLHLHLLCAPNPLLLLPRSQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKPEPPNFEIGW
        MACLHLH+LCAPNPLLLLP+SQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSP+PDFGALNQPESFP+EKRRRSEIVRQRRPSK+IVKPEPPNFEIGW
Subjt:  MACLHLHLLCAPNPLLLLPRSQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKPEPPNFEIGW

Query:  KRTKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAVKDETLSERLAQAK
        KRTKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAV+DETL++RLAQAK
Subjt:  KRTKEINLEKPVGWMIMDFLEKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAVKDETLSERLAQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G51100.1 unknown protein

1.7e-61

72.63

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Query:  RLSLKCSSESSESDPNFP-SPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKPEPPNFEIGWKRTKEINLEKPVGWMIMDFLEKLEELMEREFGST
        + S KCSS     D     +P P+       E FPIEKRRRSEI+R  R  + I KPEPPNFEIGWKRTKEINLEKP G++IMDFLEK E LM REFGS 
Subjt:  RLSLKCSSESSESDPNFP-SPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKPEPPNFEIGWKRTKEINLEKPVGWMIMDFLEKLEELMEREFGST

Query:  ELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAVKDETLSERLAQAKARCRQAILVANSF
        ELLAK GEIVAERAREEAE+L D+GKVE+RMVTELFRVLKLMEMDLAMVKA+VKDETLS+R+ QA+ARCRQAILVANSF
Subjt:  ELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAVKDETLSERLAQAKARCRQAILVANSF

Sequences

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CDS sequence

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ATGGCTTGCTTACATCTCCACCTCCTGTGTGCCCCAAACCCCCTTCTTCTTCTTCCTCGATCTCAGCCCACTTTCACAAACCCATTACAAATTACACCCAAACGCCGCCT
CTCACTCAAATGCAGCTCAGAATCCTCCGAATCCGACCCCAATTTCCCATCCCCAAATCCCGACTTCGGCGCCCTAAACCAACCAGAGAGCTTCCCAATCGAGAAGCGGA
GGAGATCCGAAATAGTCCGCCAAAGAAGACCCTCAAAAGACATCGTGAAGCCGGAGCCACCCAACTTCGAAATTGGGTGGAAGAGGACGAAAGAGATCAATTTGGAGAAG
CCGGTGGGGTGGATGATAATGGACTTTCTGGAGAAGCTGGAAGAGCTAATGGAGAGGGAGTTTGGGTCGACGGAGTTGCTTGCCAAAGTGGGAGAGATTGTAGCGGAGAG
GGCGAGAGAGGAGGCGGAGATCTTGCTAGACGACGGCAAAGTGGAGGACAGAATGGTTACAGAGCTGTTTAGGGTGTTGAAGTTGATGGAGATGGATTTGGCTATGGTCA
AGGCGGCTGTTAAAGATGAGACCTTGAGTGAGCGCCTTGCTCAGGCCAAAGCAAGGTGCAGGCAAGCTATACTTGTTGCTAATTCTTTCTAA

mRNA sequence

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Protein sequence

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MACLHLHLLCAPNPLLLLPRSQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSPNPDFGALNQPESFPIEKRRRSEIVRQRRPSKDIVKPEPPNFEIGWKRTKEINLEK
PVGWMIMDFLEKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDLAMVKAAVKDETLSERLAQAKARCRQAILVANSF

CmoCh16G009190 (gene) of Cucurbita moschata (Rifu) v1 genome