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CmoCh16G009370 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G009370
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionLIM and calponin domains-containing protein 1, putative
Genome locationCmo_Chr16:5910319..5910804
RNA-Seq ExpressionCmoCh16G009370
SyntenyCmoCh16G009370
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR008480 - Protein of unknown function DUF761, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055857.1 putative LIM and calponin domains-containing protein 1 [Cucumis melo var. makuwa]6.1e-4258.38Show/hide
Query:  MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLIL------GLLSSAFPNNAHSPN--TTPSPHTSANN--------HRALEKAHSDNIPPP
        M++ K+SEI+++L LT+LL+ITPLLSSSLRPTYLYF+FNLLI+      GLL+   P++    N  +  SP T A++        HRALEKAHSD I   
Subjt:  MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLIL------GLLSSAFPNNAHSPN--TTPSPHTSANN--------HRALEKAHSDNIPPP

Query:  NPKIESLNKCPSASTIFFIGDVDS--------EEAEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGFYRKPF
        N K+ESL KCPSAS+IF+IG+ DS        E+ EEE  GGG   NGQ+LFAQAETFIGNFYKQL+MQK+ESWKN+HGFY+K F
Subjt:  NPKIESLNKCPSASTIFFIGDVDS--------EEAEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGFYRKPF

KAG6577458.1 hypothetical protein SDJN03_25032, partial [Cucurbita argyrosperma subsp. sororia]2.8e-7998.14Show/hide
Query:  MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTTPSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTI
        MSRLKRSE+VLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTTPSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTI
Subjt:  MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTTPSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTI

Query:  FFIGDVDSEEAEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGFYRKPF
        FFIGD DSEEAEEEASGG AGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGFYRKPF
Subjt:  FFIGDVDSEEAEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGFYRKPF

KAG7015529.1 hypothetical protein SDJN02_23165, partial [Cucurbita argyrosperma subsp. argyrosperma]6.1e-7497.4Show/hide
Query:  MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTTPSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTI
        MSRLKRSE+VLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTTPSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPS STI
Subjt:  MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTTPSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTI

Query:  FFIGDVDSEEAEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVH
        FFIGD DSEEAEEEASGG AGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVH
Subjt:  FFIGDVDSEEAEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVH

KGN56109.1 hypothetical protein Csa_011766 [Cucumis sativus]4.0e-4157.75Show/hide
Query:  MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLIL------GLLSSAFPNNAHSPN--TTPSPHTSANN--------HRALEKAHSDNIPPP
        M++ K+SEIV++L LT+LL+ITPLLSSSLRPTYLYF+FNLLI+      GLL+   P++    N  +  SP T A++        HRALEKAHSD I   
Subjt:  MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLIL------GLLSSAFPNNAHSPN--TTPSPHTSANN--------HRALEKAHSDNIPPP

Query:  NPKIESLNKCPSASTIFFIGDVDSEE----------AEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGFYRKPF
        N K+ESL KCPSAS+IF+IG+ DSE            EE   GGG   NGQ+LFAQAETFIGNFYKQL+MQK+ESWKN+HGFY+K F
Subjt:  NPKIESLNKCPSASTIFFIGDVDSEE----------AEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGFYRKPF

XP_022932284.1 uncharacterized protein LOC111438634 [Cucurbita moschata]1.2e-74100Show/hide
Query:  MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTTPSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTI
        MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTTPSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTI
Subjt:  MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTTPSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTI

Query:  FFIGDVDSEEAEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKN
        FFIGDVDSEEAEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKN
Subjt:  FFIGDVDSEEAEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKN

TrEMBL top hitse value%identityAlignment
A0A0A0L509 Uncharacterized protein1.9e-4157.75Show/hide
Query:  MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLIL------GLLSSAFPNNAHSPN--TTPSPHTSANN--------HRALEKAHSDNIPPP
        M++ K+SEIV++L LT+LL+ITPLLSSSLRPTYLYF+FNLLI+      GLL+   P++    N  +  SP T A++        HRALEKAHSD I   
Subjt:  MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLIL------GLLSSAFPNNAHSPN--TTPSPHTSANN--------HRALEKAHSDNIPPP

Query:  NPKIESLNKCPSASTIFFIGDVDSEE----------AEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGFYRKPF
        N K+ESL KCPSAS+IF+IG+ DSE            EE   GGG   NGQ+LFAQAETFIGNFYKQL+MQK+ESWKN+HGFY+K F
Subjt:  NPKIESLNKCPSASTIFFIGDVDSEE----------AEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGFYRKPF

A0A5D3DK86 Putative LIM and calponin domains-containing protein 13.0e-4258.38Show/hide
Query:  MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLIL------GLLSSAFPNNAHSPN--TTPSPHTSANN--------HRALEKAHSDNIPPP
        M++ K+SEI+++L LT+LL+ITPLLSSSLRPTYLYF+FNLLI+      GLL+   P++    N  +  SP T A++        HRALEKAHSD I   
Subjt:  MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLIL------GLLSSAFPNNAHSPN--TTPSPHTSANN--------HRALEKAHSDNIPPP

Query:  NPKIESLNKCPSASTIFFIGDVDS--------EEAEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGFYRKPF
        N K+ESL KCPSAS+IF+IG+ DS        E+ EEE  GGG   NGQ+LFAQAETFIGNFYKQL+MQK+ESWKN+HGFY+K F
Subjt:  NPKIESLNKCPSASTIFFIGDVDS--------EEAEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGFYRKPF

A0A6J1EWK2 uncharacterized protein LOC1114386345.9e-75100Show/hide
Query:  MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTTPSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTI
        MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTTPSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTI
Subjt:  MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTTPSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTI

Query:  FFIGDVDSEEAEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKN
        FFIGDVDSEEAEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKN
Subjt:  FFIGDVDSEEAEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKN

B9I151 Uncharacterized protein1.6e-2742.86Show/hide
Query:  MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLIL------GLLSSAF--------------------------PNNAHSPNTTPSPHTSAN
        MS+LKRS+I+++  L  LL +TPL+SSSLRP YLYF+ NLLI+      GL+S+AF                          P + +  +TT   + +  
Subjt:  MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLIL------GLLSSAF--------------------------PNNAHSPNTTPSPHTSAN

Query:  NHRALEKAHSDNIPPPNPKIE-SLNKCPSASTIFFIGDVD---------SEEAEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGFYR
          + LEK+ S+NI     K++  + KCPS  ++FFIG  D         +EE EEEA G   G +GQ+LF +AETFIGNFYKQL+MQ++ESWK +HGFY 
Subjt:  NHRALEKAHSDNIPPPNPKIE-SLNKCPSASTIFFIGDVD---------SEEAEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGFYR

Query:  KPF
        K F
Subjt:  KPF

U7E225 Uncharacterized protein1.6e-2742.86Show/hide
Query:  MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLIL------GLLSSAF--------------------------PNNAHSPNTTPSPHTSAN
        MS+LKRS+I+++  L  LL +TPL+SSSLRP YLYF+ NLLI+      GL+S+AF                          P + +  +TT   + +  
Subjt:  MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLIL------GLLSSAF--------------------------PNNAHSPNTTPSPHTSAN

Query:  NHRALEKAHSDNIPPPNPKIE-SLNKCPSASTIFFIGDVD---------SEEAEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGFYR
          + LEK+ S+NI     K++  + KCPS  ++FFIG  D         +EE EEEA G   G +GQ+LF +AETFIGNFYKQL+MQ++ESWK +HGFY 
Subjt:  NHRALEKAHSDNIPPPNPKIE-SLNKCPSASTIFFIGDVD---------SEEAEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGFYR

Query:  KPF
        K F
Subjt:  KPF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAGGTTGAAGAGATCCGAAATTGTTCTTGTTTTGTGCCTCACCCTTCTTCTTCTAATAACGCCTCTTCTTTCCTCATCCCTTAGACCCACATATCTCTACTTCGT
CTTCAACCTCCTCATCCTTGGCCTTCTCTCCTCTGCCTTCCCAAATAATGCTCACAGCCCCAACACCACCCCTTCCCCTCACACCTCTGCCAACAACCACAGGGCTCTAG
AGAAGGCCCATTCCGACAACATTCCCCCTCCCAATCCCAAAATCGAATCTCTCAACAAGTGTCCCTCTGCTTCCACCATTTTCTTCATCGGAGATGTCGACAGTGAGGAG
GCGGAAGAGGAGGCTTCTGGCGGCGGCGCCGGTGGAAATGGGCAAGACTTGTTTGCCCAAGCTGAGACGTTTATTGGGAACTTCTATAAGCAGTTGGAGATGCAGAAACA
GGAGTCTTGGAAGAATGTTCATGGTTTCTATCGGAAACCCTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCAGGTTGAAGAGATCCGAAATTGTTCTTGTTTTGTGCCTCACCCTTCTTCTTCTAATAACGCCTCTTCTTTCCTCATCCCTTAGACCCACATATCTCTACTTCGT
CTTCAACCTCCTCATCCTTGGCCTTCTCTCCTCTGCCTTCCCAAATAATGCTCACAGCCCCAACACCACCCCTTCCCCTCACACCTCTGCCAACAACCACAGGGCTCTAG
AGAAGGCCCATTCCGACAACATTCCCCCTCCCAATCCCAAAATCGAATCTCTCAACAAGTGTCCCTCTGCTTCCACCATTTTCTTCATCGGAGATGTCGACAGTGAGGAG
GCGGAAGAGGAGGCTTCTGGCGGCGGCGCCGGTGGAAATGGGCAAGACTTGTTTGCCCAAGCTGAGACGTTTATTGGGAACTTCTATAAGCAGTTGGAGATGCAGAAACA
GGAGTCTTGGAAGAATGTTCATGGTTTCTATCGGAAACCCTTTTGA
Protein sequenceShow/hide protein sequence
MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTTPSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIGDVDSEE
AEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGFYRKPF