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CmoCh16G009710 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G009710
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionexopolygalacturonase-like
Genome locationCmo_Chr16:6591810..6592349
RNA-Seq ExpressionCmoCh16G009710
SyntenyCmoCh16G009710
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR011050 - Pectin lyase fold/virulence factor


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577490.1 Exopolygalacturonase, partial [Cucurbita argyrosperma subsp. sororia]7.8e-0974.42Show/hide
Query:  SLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL
        S TSQVAV FECSQV   E ++LQDINLS+KGDG+PTSICHN+
Subjt:  SLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL

KAG6577492.1 Exopolygalacturonase, partial [Cucurbita argyrosperma subsp. sororia]1.0e-0874.42Show/hide
Query:  SLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL
        S TSQ AV FECSQV   E ++LQDINLS+KGDGEPTSICHN+
Subjt:  SLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL

KAG6577493.1 Exopolygalacturonase, partial [Cucurbita argyrosperma subsp. sororia]2.1e-0979.07Show/hide
Query:  SLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL
        S TSQVAV FECSQVLP +G++LQDINLS KGDGEPTSIC N+
Subjt:  SLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL

XP_022932248.1 exopolygalacturonase-like [Cucurbita moschata]7.8e-0974.42Show/hide
Query:  SLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL
        S TSQVAV FECSQV   E ++LQDINLS+KGDG+PTSICHN+
Subjt:  SLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL

XP_023552935.1 exopolygalacturonase-like [Cucurbita pepo subsp. pepo]1.0e-0874.42Show/hide
Query:  SLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL
        S TSQ AV FECSQV   E ++LQDINLS+KGDGEPTSICHN+
Subjt:  SLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL

TrEMBL top hitse value%identityAlignment
A0A0A0L660 Uncharacterized protein1.0e-0665.12Show/hide
Query:  SLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL
        S  + VAV FECSQVLP +G++LQDINL+F G G+ TSICHN+
Subjt:  SLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL

A0A0A0L7H9 Uncharacterized protein1.5e-0560.47Show/hide
Query:  SLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL
        S  +QVAV FECS+V+P +G++LQDINL F G G  TS CHN+
Subjt:  SLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL

A0A5D3BB58 Exopolygalacturonase-like1.6e-0767.44Show/hide
Query:  SLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL
        S  +QVAV FECSQVLP +G++LQDINL+F G G+ TSICHN+
Subjt:  SLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL

A0A6J1F153 exopolygalacturonase-like3.8e-0974.42Show/hide
Query:  SLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL
        S TSQVAV FECSQV   E ++LQDINLS+KGDG+PTSICHN+
Subjt:  SLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL

A0A6J1L832 exopolygalacturonase-like7.1e-0872.5Show/hide
Query:  SQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL
        +Q AV FECSQV P EG++LQDINLSF G G+PTSICHN+
Subjt:  SQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGTTTAACATCCCAAGTGGCAGTATGTTTTGAATGCAGCCAAGTTCTTCCATTCGAAGGCGTAATGCTACAAGACATTAACCTCTCCTTCAAAGGTGACGGCGA
ACCAACTTCCATTTGTCACAATCTCGATTCAATAGATTATCACTTTTCAGTTTATACTTTTTCTCTCTACTCTTATTCTAATACACAACGCTTCCAAATGAATTGGCTTA
TTGGAAAAGAGTGGATAAGGTTTTTGTTGCGGGTTGCTTTCACGCTTGGATTGCATCGTTGGGTTCAAACACAACAAGCCCCCCCATCGTGCATGATTGTGGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAGTTTAACATCCCAAGTGGCAGTATGTTTTGAATGCAGCCAAGTTCTTCCATTCGAAGGCGTAATGCTACAAGACATTAACCTCTCCTTCAAAGGTGACGGCGA
ACCAACTTCCATTTGTCACAATCTCGATTCAATAGATTATCACTTTTCAGTTTATACTTTTTCTCTCTACTCTTATTCTAATACACAACGCTTCCAAATGAATTGGCTTA
TTGGAAAAGAGTGGATAAGGTTTTTGTTGCGGGTTGCTTTCACGCTTGGATTGCATCGTTGGGTTCAAACACAACAAGCCCCCCCATCGTGCATGATTGTGGGTTGA
Protein sequenceShow/hide protein sequence
MESLTSQVAVCFECSQVLPFEGVMLQDINLSFKGDGEPTSICHNLDSIDYHFSVYTFSLYSYSNTQRFQMNWLIGKEWIRFLLRVAFTLGLHRWVQTQQAPPSCMIVG