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CmoCh16G009860 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G009860
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTHO complex subunit 3
Genome locationCmo_Chr16:6763826..6765654
RNA-Seq ExpressionCmoCh16G009860
SyntenyCmoCh16G009860
Gene Ontology termsGO:0006406 - mRNA export from nucleus (biological process)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR024977 - Anaphase-promoting complex subunit 4, WD40 domain
IPR040132 - TREX component Tex1/THOC3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8723573.1 THO complex subunit 3 [Hibiscus syriacus]1.1e-1847.11Show/hide
Query:  NINITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYE----------------------------------------------------PNVQMGR
        NINITYKPDGTHIAVGN DDEL ILDVRKFKP+H+RKFNYE                                                     NV  GR
Subjt:  NINITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYE----------------------------------------------------PNVQMGR

Query:  TVHQIPCRGATNSVEWNPKHN
        TVHQIP R A NS+EWNPK+N
Subjt:  TVHQIPCRGATNSVEWNPKHN
KAG6577506.1 Actin-related protein 8, partial [Cucurbita argyrosperma subsp. sororia]1.0e-2495.08Show/hide
Query:  MPMGNSHSKMSSVVENININITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYEPNV
        MPMGNSHSKMSSV ENININITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYEP +
Subjt:  MPMGNSHSKMSSVVENININITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYEPNV
XP_022932318.1 THO complex subunit 3-like isoform X1 [Cucurbita moschata]2.6e-5295.41Show/hide
Query:  MGNSHSKMSSVVENININITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYEPNVQMGRTVHQIPCRGATNSVEWNPKHNFNLLLWLAMTRTSIRL
        MGNSHSKMSSVVENININITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYEPNVQMGRTVHQIPCRGATNSVEWNPKHNFNLLLWLAMTRTSIRL
Subjt:  MGNSHSKMSSVVENININITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYEPNVQMGRTVHQIPCRGATNSVEWNPKHNFNLLLWLAMTRTSIRL

Query:  MK---ASIC
        MK    S+C
Subjt:  MK---ASIC
XP_022932321.1 THO complex subunit 3-like isoform X2 [Cucurbita moschata]1.1e-5395.5Show/hide
Query:  MPMGNSHSKMSSVVENININITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYEPNVQMGRTVHQIPCRGATNSVEWNPKHNFNLLLWLAMTRTSI
        MPMGNSHSKMSSVVENININITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYEPNVQMGRTVHQIPCRGATNSVEWNPKHNFNLLLWLAMTRTSI
Subjt:  MPMGNSHSKMSSVVENININITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYEPNVQMGRTVHQIPCRGATNSVEWNPKHNFNLLLWLAMTRTSI

Query:  RLMK---ASIC
        RLMK    S+C
Subjt:  RLMK---ASIC
XP_022965197.1 THO complex subunit 3-like isoform X2 [Cucurbita maxima]9.7e-3186.67Show/hide
Query:  NINITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYEPNVQMGRTVHQIPCRGATNSVEWNPKHNFNLLLW
        NINITYKPDGTHIAVGN DDELTILDVR FKPVHKRKFNYE NVQMGRTVHQIPCRGA NSVEWNP+HN     W
Subjt:  NINITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYEPNVQMGRTVHQIPCRGATNSVEWNPKHNFNLLLW
TrEMBL top hitse value%identityAlignment
A0A6A3BG58 THO complex subunit 37.8e-1856.84Show/hide
Query:  NINITYKPDGTHIAVGNSDDELTILDVRKFK-----------PVHKRKFNYE---------------PNVQMGRTVHQIPCRGATNSVEWNPKHN
        NINITYKPDGTHIAVGN DDELTILDVR              PV    FNY                 NV  GRTVHQIPCR A NSVEWNPK+N
Subjt:  NINITYKPDGTHIAVGNSDDELTILDVRKFK-----------PVHKRKFNYE---------------PNVQMGRTVHQIPCRGATNSVEWNPKHN
A0A6A3C3N8 THO complex subunit 35.4e-1947.11Show/hide
Query:  NINITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYE----------------------------------------------------PNVQMGR
        NINITYKPDGTHIAVGN DDEL ILDVRKFKP+H+RKFNYE                                                     NV  GR
Subjt:  NINITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYE----------------------------------------------------PNVQMGR

Query:  TVHQIPCRGATNSVEWNPKHN
        TVHQIP R A NS+EWNPK+N
Subjt:  TVHQIPCRGATNSVEWNPKHN
A0A6J1EW21 THO complex subunit 3-like isoform X25.1e-5495.5Show/hide
Query:  MPMGNSHSKMSSVVENININITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYEPNVQMGRTVHQIPCRGATNSVEWNPKHNFNLLLWLAMTRTSI
        MPMGNSHSKMSSVVENININITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYEPNVQMGRTVHQIPCRGATNSVEWNPKHNFNLLLWLAMTRTSI
Subjt:  MPMGNSHSKMSSVVENININITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYEPNVQMGRTVHQIPCRGATNSVEWNPKHNFNLLLWLAMTRTSI

Query:  RLMK---ASIC
        RLMK    S+C
Subjt:  RLMK---ASIC
A0A6J1F1C1 THO complex subunit 3-like isoform X11.3e-5295.41Show/hide
Query:  MGNSHSKMSSVVENININITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYEPNVQMGRTVHQIPCRGATNSVEWNPKHNFNLLLWLAMTRTSIRL
        MGNSHSKMSSVVENININITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYEPNVQMGRTVHQIPCRGATNSVEWNPKHNFNLLLWLAMTRTSIRL
Subjt:  MGNSHSKMSSVVENININITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYEPNVQMGRTVHQIPCRGATNSVEWNPKHNFNLLLWLAMTRTSIRL

Query:  MK---ASIC
        MK    S+C
Subjt:  MK---ASIC
A0A6J1HJP7 THO complex subunit 3-like isoform X24.7e-3186.67Show/hide
Query:  NINITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYEPNVQMGRTVHQIPCRGATNSVEWNPKHNFNLLLW
        NINITYKPDGTHIAVGN DDELTILDVR FKPVHKRKFNYE NVQMGRTVHQIPCRGA NSVEWNP+HN     W
Subjt:  NINITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYEPNVQMGRTVHQIPCRGATNSVEWNPKHNFNLLLW
SwissProt top hitse value%identityAlignment
Q9FKT5 THO complex subunit 31.3e-1733.9Show/hide
Query:  NINITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYE-----------------------------------------------------------
        NINITYKPDGTH+AVGN DDELTILDVRKFKP+H+RKFNYE                                                           
Subjt:  NINITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYE-----------------------------------------------------------

Query:  -------------------------------------------------PNVQMGRTVHQIPCRGATNSVEWNPKHN
                                                          NVQ GRTVHQIPCR A NSVEWNPK+N
Subjt:  -------------------------------------------------PNVQMGRTVHQIPCRGATNSVEWNPKHN
Arabidopsis top hitse value%identityAlignment
AT5G56130.1 Transducin/WD40 repeat-like superfamily protein9.1e-1933.9Show/hide
Query:  NINITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYE-----------------------------------------------------------
        NINITYKPDGTH+AVGN DDELTILDVRKFKP+H+RKFNYE                                                           
Subjt:  NINITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYE-----------------------------------------------------------

Query:  -------------------------------------------------PNVQMGRTVHQIPCRGATNSVEWNPKHN
                                                          NVQ GRTVHQIPCR A NSVEWNPK+N
Subjt:  -------------------------------------------------PNVQMGRTVHQIPCRGATNSVEWNPKHN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCATGGGAAATTCTCACAGCAAGATGAGCTCAGTGGTGGAAAATATCAATATCAATATCACCTACAAACCTGATGGCACGCACATAGCTGTTGGGAATAGCGATGA
TGAACTTACAATTCTGGATGTTAGGAAGTTTAAACCAGTTCACAAGCGCAAGTTCAATTATGAGCCGAATGTCCAAATGGGACGAACAGTTCACCAGATTCCTTGTCGGG
GTGCGACGAACAGTGTGGAGTGGAATCCAAAGCATAATTTTAACTTGCTCTTATGGCTGGCGATGACAAGAACAAGTATCAGGCTGATGAAGGCAAGTATCTGTGCATAT
TGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCATGGGAAATTCTCACAGCAAGATGAGCTCAGTGGTGGAAAATATCAATATCAATATCACCTACAAACCTGATGGCACGCACATAGCTGTTGGGAATAGCGATGA
TGAACTTACAATTCTGGATGTTAGGAAGTTTAAACCAGTTCACAAGCGCAAGTTCAATTATGAGCCGAATGTCCAAATGGGACGAACAGTTCACCAGATTCCTTGTCGGG
GTGCGACGAACAGTGTGGAGTGGAATCCAAAGCATAATTTTAACTTGCTCTTATGGCTGGCGATGACAAGAACAAGTATCAGGCTGATGAAGGCAAGTATCTGTGCATAT
TGATGTTTCCCACTAATCTGTTTAATTTGATGCACAGGAGGGTTTACTTTCAGTTTTATCTTCATTTTCTTGTTGAAGGTATTTTTAGGATCTTTGTGCTGGAAGTGCAT
GATTAATAGATGACTATTTAGAGTAAAACCGAATAGAGATATATATGGTAGATATTTATATATATATAGAAGGTGATTATATGTGC
Protein sequenceShow/hide protein sequence
MPMGNSHSKMSSVVENININITYKPDGTHIAVGNSDDELTILDVRKFKPVHKRKFNYEPNVQMGRTVHQIPCRGATNSVEWNPKHNFNLLLWLAMTRTSIRLMKASICAY