CuGenDBv2

Gene ID	CmoCh16G010080
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	30S ribosomal protein S19, chloroplastic
Genome location	Cmo_Chr16:6962789..6965376
RNA-Seq Expression	CmoCh16G010080
Synteny	CmoCh16G010080
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0009507 - chloroplast (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR002222 - Ribosomal protein S19/S15 IPR005732 - Ribosomal protein S19, bacterial-type IPR023575 - Ribosomal protein S19/S15, superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

YP_009751778.1 ribosomal protein S19 [Herpetospermum pedunculosum]

9.3e-32

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Query:  GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP
        GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNG+DHLPIYITDRM   K+G   P
Subjt:  GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP

YP_009751946.1 ribosomal protein S19 [Cyclanthera pedata]

9.3e-32

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Query:  GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP
        GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNG+DHLPIYITDRM   K+G   P
Subjt:  GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP

YP_009752115.1 ribosomal protein S19 [Dendrosicyos socotranus]

2.7e-31

88.75

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Query:  GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP
        GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEII TWSRASTIIPTMIGHTIAIHNG+DHLPIYITDRM   K+G   P
Subjt:  GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP

YP_009752283.1 ribosomal protein S19 [Trichosanthes baviensis]

3.5e-31

88.75

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Query:  GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP
        GKFTV RSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNG+DHLPIYITDRM   K+G   P
Subjt:  GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP

YP_009752706.1 ribosomal protein S19 [Ampelosycios humblotii]

7.9e-31

88.75

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Query:  GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP
        GKFTVARSLKKNPFVGNHLLKKINKLNTK EKEIIVTWSRASTIIPTMIGHTIAIHNG+DHLPIYITDRM   K+G   P
Subjt:  GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP

TrEMBL top hits

e value

%identity

Alignment

A0A6H0EQF5 30S ribosomal protein S19, chloroplastic

4.5e-32

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Query:  GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP
        GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNG+DHLPIYITDRM   K+G   P
Subjt:  GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP

A0A6H0ER66 30S ribosomal protein S19, chloroplastic

1.7e-31

88.75

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Query:  GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP
        GKFTV RSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNG+DHLPIYITDRM   K+G   P
Subjt:  GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP

A0A6H0ESU5 30S ribosomal protein S19, chloroplastic

4.5e-32

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Query:  GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP
        GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNG+DHLPIYITDRM   K+G   P
Subjt:  GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP

A0A6H0EUL4 30S ribosomal protein S19, chloroplastic

1.3e-31

88.75

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Query:  GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP
        GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEII TWSRASTIIPTMIGHTIAIHNG+DHLPIYITDRM   K+G   P
Subjt:  GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP

A0A6H0EY43 30S ribosomal protein S19, chloroplastic

4.5e-32

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Query:  GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP
        GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNG+DHLPIYITDRM   K+G   P
Subjt:  GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP

SwissProt top hits

e value

%identity

Alignment

A0ZZ75 30S ribosomal protein S19, chloroplastic

1.0e-28

80.26

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Query:  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP
        +ARSLKKNPFV NHLLKKI +LNTK EKEII+TWSRASTIIPTMIGHTIAIHNG++HLPIYITDRM   K+G   P
Subjt:  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP

B1NWJ0 30S ribosomal protein S19, chloroplastic

7.7e-29

81.58

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Query:  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP
        + RSLKKNPFV NHLLKKINKLN K EKEIIVTWSRASTIIPTMIGHTIAIHNG++HLPIYITDRM   K+G   P
Subjt:  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP

B5LMR2 30S ribosomal protein S19, chloroplastic

6.9e-30

82.89

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Query:  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP
        + RSLKKNPFV NHLL+KINKLNTKGEKEII+TWSRASTIIPTMIGHTIAIHNGR+HLPIYITDRM   K+G   P
Subjt:  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP

Q2L945 30S ribosomal protein S19, chloroplastic

1.0e-28

80.26

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Query:  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP
        +ARSLKKNPFV NHLLKKI +LNTK EKEII+TWSRASTIIPTMIGHTIAIHNG++HLPIYITDRM   K+G   P
Subjt:  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP

Q4VZM8 30S ribosomal protein S19, chloroplastic

1.7e-31

85.53

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Query:  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP
        +ARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIA+HNG+DHLP+YITDRM   K+G   P
Subjt:  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP

Arabidopsis top hits

e value

%identity

Alignment

ATCG00820.1 ribosomal protein S19

1.1e-27

76.32

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Query:  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP
        V RSLKKNPFV  HLL+KI KLNTK EKEII+TWSRASTIIPTMIGHTIAIHNGR+HLP+YI D M   K+G   P
Subjt:  VARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLP

Sequences

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CDS sequence

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GGGAAATTCACTGTGGCGCGCTCATTAAAAAAAAATCCTTTTGTGGGAAACCATTTATTAAAAAAAATAAATAAGCTTAACACAAAGGGAGAAAAAGAAATAATAGTAAC
TTGGTCCAGAGCATCTACCATTATACCCACAATGATTGGGCATACTATTGCTATTCATAATGGAAGGGACCACTTGCCTATTTATATAACGGATCGCATGGATCAGAAAA
AAATGGGTCCGAACCTCCCCGGGAATGATTTGGAAGATCCAAAACAAAAAAATAGTGGCAGCAACGGAGAGCAACGAAGCGCCGATGAGAGAGCCGATTGCTGGAAGGCC
GACAGTGGCGGCGCTGGTTGGTCCAGGTGCAGGAGCCGACGCCTCGTTCTGAGCCACGGCGGCGGTGACGGTTGCGGCAGCGAAGAGGACGGCGCAGGTGCAAATCCCAG
CGATTTTCGGTGGAAGGAT

mRNA sequence

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Protein sequence

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GKFTVARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAIHNGRDHLPIYITDRMDQKKMGPNLPGNDLEDPKQKNSGSNGEQRSADERADCWKA
DSGGAGWSRCRSRRLVLSHGGGDGCGSEEDGAGANPSDFRWKD

CmoCh16G010080 (gene) of Cucurbita moschata (Rifu) v1 genome