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CmoCh16G010420 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G010420
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionzinc finger protein ZAT3-like
Genome locationCmo_Chr16:7263304..7265761
RNA-Seq ExpressionCmoCh16G010420
SyntenyCmoCh16G010420
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577553.1 hypothetical protein SDJN03_25127, partial [Cucurbita argyrosperma subsp. sororia]1.9e-8298.78Show/hide
Query:  MHQDSQNLRFEDGPASSNGDEDASSSSSSSSPCSRSNEQAFSHSCNIRRKGFKSENSQTTNSNIACYSSITRSAADSLEKPKCGRCNEVFSSMKALYVHM
        MHQDSQNLRFE GPASSNGDEDASSSSSSSSPCSRSNEQAFSHSCNIRR+GFKSENSQTTNSNIACYSSITRSAADSLEKPKCGRCNEVFSSMKALYVHM
Subjt:  MHQDSQNLRFEDGPASSNGDEDASSSSSSSSPCSRSNEQAFSHSCNIRRKGFKSENSQTTNSNIACYSSITRSAADSLEKPKCGRCNEVFSSMKALYVHM

Query:  RFHLEAPWKACISSLNDACWSWSVTGRRGRIRTRVEKFEVNLMNFAQTGNSTTSSVTTVKKKDN
        RFHLEAPWKACISSLNDACWSWSVTGRRGRIRTRVEKFEVNLMNFAQTGNSTTSSVTTVKKKDN
Subjt:  RFHLEAPWKACISSLNDACWSWSVTGRRGRIRTRVEKFEVNLMNFAQTGNSTTSSVTTVKKKDN
XP_022143488.1 zinc finger protein ZAT3-like [Momordica charantia]2.7e-0440Show/hide
Query:  SLEKPKCGRCNEVFSSMKALYVHMRFHLEAPWKAC----ISSLNDACWS-----WSVTGRRGRIRTRVEKFEVNLMNFAQTGNSTTSSVTTVKKK
        S+   KCG C ++F +MKALY HMR H +  W+       SS + A  S     WSVTGRRGR RT            A T NS     ++ KKK
Subjt:  SLEKPKCGRCNEVFSSMKALYVHMRFHLEAPWKAC----ISSLNDACWS-----WSVTGRRGRIRTRVEKFEVNLMNFAQTGNSTTSSVTTVKKK
TrEMBL top hitse value%identityAlignment
A0A6J1CQU4 zinc finger protein ZAT3-like1.3e-0440Show/hide
Query:  SLEKPKCGRCNEVFSSMKALYVHMRFHLEAPWKAC----ISSLNDACWS-----WSVTGRRGRIRTRVEKFEVNLMNFAQTGNSTTSSVTTVKKK
        S+   KCG C ++F +MKALY HMR H +  W+       SS + A  S     WSVTGRRGR RT            A T NS     ++ KKK
Subjt:  SLEKPKCGRCNEVFSSMKALYVHMRFHLEAPWKAC----ISSLNDACWS-----WSVTGRRGRIRTRVEKFEVNLMNFAQTGNSTTSSVTTVKKK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAACTTTTGAGGATGTTATTTATGCTACAATGACATACACAACCAATAACTCAATGGAGCAATCAACAAAGAGGAATCAAATGCATCAAGATAGTCAAAAC
CTAAGATTTGAAGATGGCCCTGCTTCTTCAAATGGTGATGAAGATGCATCGTCTTCTTCATCTTCGTCATCTCCATGTTCGAGGTCGAACGAACAAGCTTTTAGC
CATAGCTGCAATATTAGAAGAAAAGGGTTTAAGTCTGAAAACTCACAAACTACCAACAGCAATATAGCATGCTATAGCTCCATTACTAGAAGTGCAGCTGATAGC
TTGGAGAAGCCCAAATGTGGACGGTGCAATGAGGTTTTTTCATCCATGAAGGCATTGTATGTGCATATGAGGTTTCATTTGGAGGCCCCATGGAAGGCTTGTATC
TCCTCTTTGAATGATGCTTGTTGGAGCTGGTCTGTCACTGGTCGGAGAGGGCGAATAAGGACGAGAGTGGAAAAATTCGAGGTTAACCTCATGAATTTTGCTCAA
ACGGGAAACTCGACTACGAGTTCTGTTACCACCGTAAAGAAAAAGGACAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAACTTTTGAGGATGTTATTTATGCTACAATGACATACACAACCAATAACTCAATGGAGCAATCAACAAAGAGGAATCAAATGCATCAAGATAGTCAAAAC
CTAAGATTTGAAGATGGCCCTGCTTCTTCAAATGGTGATGAAGATGCATCGTCTTCTTCATCTTCGTCATCTCCATGTTCGAGGTCGAACGAACAAGCTTTTAGC
CATAGCTGCAATATTAGAAGAAAAGGGTTTAAGTCTGAAAACTCACAAACTACCAACAGCAATATAGCATGCTATAGCTCCATTACTAGAAGTGCAGCTGATAGC
TTGGAGAAGCCCAAATGTGGACGGTGCAATGAGGTTTTTTCATCCATGAAGGCATTGTATGTGCATATGAGGTTTCATTTGGAGGCCCCATGGAAGGCTTGTATC
TCCTCTTTGAATGATGCTTGTTGGAGCTGGTCTGTCACTGGTCGGAGAGGGCGAATAAGGACGAGAGTGGAAAAATTCGAGGTTAACCTCATGAATTTTGCTCAA
ACGGGAAACTCGACTACGAGTTCTGTTACCACCGTAAAGAAAAAGGACAATTAA
Protein sequenceShow/hide protein sequence
MGTFEDVIYATMTYTTNNSMEQSTKRNQMHQDSQNLRFEDGPASSNGDEDASSSSSSSSPCSRSNEQAFSHSCNIRRKGFKSENSQTTNSNIACYSSITRSAADS
LEKPKCGRCNEVFSSMKALYVHMRFHLEAPWKACISSLNDACWSWSVTGRRGRIRTRVEKFEVNLMNFAQTGNSTTSSVTTVKKKDN