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CmoCh16G010700 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G010700
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontranscription initiation factor TFIID subunit 13
Genome locationCmo_Chr16:7534469..7535338
RNA-Seq ExpressionCmoCh16G010700
SyntenyCmoCh16G010700
Gene Ontology termsGO:0006366 - transcription by RNA polymerase II (biological process)
GO:0006413 - translational initiation (biological process)
GO:0009793 - embryo development ending in seed dormancy (biological process)
GO:0009960 - endosperm development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144527.1 transcription initiation factor TFIID subunit 13 [Momordica charantia]1.7e-1293.33Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDD
        MNNPSAG SSKQRTGSSQPSETSFKRKRGV QK+LQHMMYGFGDD
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDD
XP_022953440.1 transcription initiation factor TFIID subunit 13 [Cucurbita moschata]4.5e-1393.48Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDDA
        MNNPS GSSSKQRTGSSQPSETSFKRKRGV QK+LQHMMYGFGDDA
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDDA
XP_022991537.1 transcription initiation factor TFIID subunit 13 [Cucurbita maxima]1.6e-1395.65Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDDA
        MNNPSAGSSSKQRTGSSQPSETSFKRKRGV QK+LQHMMYGFGDDA
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDDA
XP_023547584.1 transcription initiation factor TFIID subunit 13 [Cucurbita pepo subsp. pepo]3.5e-1393.48Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDDA
        MNNPSAGSSSKQRTG+SQPSETSFKRKRGV QK+LQHMMYGFGDDA
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDDA
XP_038899215.1 transcription initiation factor TFIID subunit 13-like [Benincasa hispida]4.5e-1395.56Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDD
        MNNPSAGSSSKQRTGSSQPSETSFKRKRGV QK+LQHMMYGFGDD
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDD
TrEMBL top hitse value%identityAlignment
A0A1S3BRL0 transcription initiation factor TFIID subunit 131.9e-1293.33Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDD
        MNN SAGSSSKQRTGSSQPSETSFKRKRGV QK+LQHMMYGFGDD
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDD
A0A5A7TZC2 Transcription initiation factor TFIID subunit 131.9e-1293.33Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDD
        MNN SAGSSSKQRTGSSQPSETSFKRKRGV QK+LQHMMYGFGDD
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDD
A0A6J1CTQ0 transcription initiation factor TFIID subunit 138.3e-1393.33Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDD
        MNNPSAG SSKQRTGSSQPSETSFKRKRGV QK+LQHMMYGFGDD
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDD
A0A6J1GN10 transcription initiation factor TFIID subunit 132.2e-1393.48Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDDA
        MNNPS GSSSKQRTGSSQPSETSFKRKRGV QK+LQHMMYGFGDDA
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDDA
A0A6J1JWI2 transcription initiation factor TFIID subunit 137.5e-1495.65Show/hide
Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDDA
        MNNPSAGSSSKQRTGSSQPSETSFKRKRGV QK+LQHMMYGFGDDA
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDDA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAATCCATCAGCTGGGTCGTCCTCAAAGCAAAGAACTGGATCATCTCAACCCTCTGAAACTTCTTTTAAGCGCAAGAGAGGGGTTTGTCAGAAACAATTGCAGCA
CATGATGTATGGTTTTGGAGATGACGCCGGGAAATCCGCTTGGAACTCCGCCGGCAATATCCGCTCGGAACTCCGCCGGCAATATCCGCTCGGAACTCCGCCGGCAATAT
CCGCTGGCAATATCCGCTCGGAACTCCGCCGGCAATATCCTACAAGAACGAGAACAGAGAGAAGGGATCCAGATCCAGACCCGACCCGCTCAAATCTGACCCAATCCGTG
GGCTTCCCGGCCCAGCGGATAGCCCAGATCCGTGGGCTGCCCGGCCCACTACGACAAGCCCAGGTCCGTGAGGTGACCCGGCCCACTACGACAAGGCTAGGTCCGTGGGC
TAGCCCGGCCCACTACGACAATCCCAGGTCCGTGAGGTGA
mRNA sequenceShow/hide mRNA sequence
TCAGGTAGTCTGCCATCATACTTTGGTTGGTTGAGCCCACCTGCCCACCCCATACCATTCATTCATACGGGCCGACTTCAAGAGTTGAACCCAGTCTGGAGGCCTTTTGT
ATTTTAAACCGGGTATCTCTCTCCTCCAAACCCTAAAACTCCGAACCCGCCGCCGCCGCCTCTCTACATCTCTCTCCGTCTCTCCAAACCCTAGTAGTAGAAGATAGTGA
AGATGAATAATCCATCAGCTGGGTCGTCCTCAAAGCAAAGAACTGGATCATCTCAACCCTCTGAAACTTCTTTTAAGCGCAAGAGAGGGGTTTGTCAGAAACAATTGCAG
CACATGATGTATGGTTTTGGAGATGACGCCGGGAAATCCGCTTGGAACTCCGCCGGCAATATCCGCTCGGAACTCCGCCGGCAATATCCGCTCGGAACTCCGCCGGCAAT
ATCCGCTGGCAATATCCGCTCGGAACTCCGCCGGCAATATCCTACAAGAACGAGAACAGAGAGAAGGGATCCAGATCCAGACCCGACCCGCTCAAATCTGACCCAATCCG
TGGGCTTCCCGGCCCAGCGGATAGCCCAGATCCGTGGGCTGCCCGGCCCACTACGACAAGCCCAGGTCCGTGAGGTGACCCGGCCCACTACGACAAGGCTAGGTCCGTGG
GCTAGCCCGGCCCACTACGACAATCCCAGGTCCGTGAGGTGA
Protein sequenceShow/hide protein sequence
MNNPSAGSSSKQRTGSSQPSETSFKRKRGVCQKQLQHMMYGFGDDAGKSAWNSAGNIRSELRRQYPLGTPPAISAGNIRSELRRQYPTRTRTERRDPDPDPTRSNLTQSV
GFPAQRIAQIRGLPGPLRQAQVREVTRPTTTRLGPWASPAHYDNPRSVR