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CmoCh16G010870 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G010870
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA-directed RNA polymerase subunit beta''
Genome locationCmo_Chr16:7689849..7690991
RNA-Seq ExpressionCmoCh16G010870
SyntenyCmoCh16G010870
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AHE41662.1 RNA polymerase beta' subunit, partial [Kalanchoe laciniata]7.3e-1093.94Show/hide
Query:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
        GTA+H+RTPSNGKIKFNEDLVHPTRTRHGHPAF
Subjt:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
QWQ52067.1 RNA polymerase beta'' subunit [Pternopetalum vulgare]7.3e-1093.94Show/hide
Query:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
        GTA+H+RTPSNGKIKFNEDLVHPTRTRHGHPAF
Subjt:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
QXI88415.1 RNA polymerase beta'' subunit [Kalanchoe delagoensis]7.3e-1093.94Show/hide
Query:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
        GTA+H+RTPSNGKIKFNEDLVHPTRTRHGHPAF
Subjt:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
QXI88670.1 RNA polymerase beta'' subunit [Kalanchoe longiflora]7.3e-1093.94Show/hide
Query:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
        GTA+H+RTPSNGKIKFNEDLVHPTRTRHGHPAF
Subjt:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
YP_010015505.1 RNA polymerase beta'' subunit [Kalanchoe daigremontiana]7.3e-1093.94Show/hide
Query:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
        GTA+H+RTPSNGKIKFNEDLVHPTRTRHGHPAF
Subjt:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
TrEMBL top hitse value%identityAlignment
A0A5J6RMQ6 DNA-directed RNA polymerase subunit beta''3.5e-1093.94Show/hide
Query:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
        GTA+H+RTPSNGKIKFNEDLVHPTRTRHGHPAF
Subjt:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
A0A7N0UQS2 DNA-directed RNA polymerase3.5e-1093.94Show/hide
Query:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
        GTA+H+RTPSNGKIKFNEDLVHPTRTRHGHPAF
Subjt:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
A0A7U0QCT8 RNA polymerase beta'' subunit3.5e-1093.94Show/hide
Query:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
        GTA+H+RTPSNGKIKFNEDLVHPTRTRHGHPAF
Subjt:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
A0A7U0QD94 RNA polymerase beta'' subunit3.5e-1093.94Show/hide
Query:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
        GTA+H+RTPSNGKIKFNEDLVHPTRTRHGHPAF
Subjt:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
V9ZBN5 DNA-directed RNA polymerase (Fragment)3.5e-1093.94Show/hide
Query:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
        GTA+H+RTPSNGKIKFNEDLVHPTRTRHGHPAF
Subjt:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
SwissProt top hitse value%identityAlignment
A6MMB2 DNA-directed RNA polymerase subunit beta''3.6e-1290.91Show/hide
Query:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
        GTA+H+R PSNGKIKFNEDLVHPTRTRHGHPAF
Subjt:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
A8SE78 DNA-directed RNA polymerase subunit beta''3.6e-1290.91Show/hide
Query:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
        GTA+H+R PSNGKIKFNEDLVHPTRTRHGHPAF
Subjt:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
B1A925 DNA-directed RNA polymerase subunit beta''2.8e-1290.91Show/hide
Query:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
        GTA+H+R+PSNGKIKFNEDLVHPTRTRHGHPAF
Subjt:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
Q4VZP3 DNA-directed RNA polymerase subunit beta''2.8e-1293.94Show/hide
Query:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
        GTA+HIR PSNGKIKFNEDLVHPTRTRHGHPAF
Subjt:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
Q8S8Y1 DNA-directed RNA polymerase subunit beta''3.6e-1290.91Show/hide
Query:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
        GTA+H+R PSNGKIKFNEDLVHPTRTRHGHPAF
Subjt:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
Arabidopsis top hitse value%identityAlignment
ATCG00170.1 DNA-directed RNA polymerase family protein1.3e-1287.88Show/hide
Query:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF
        GTA+H+R P NGKIKFNEDLVHPTRTRHGHPAF
Subjt:  GTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAGTGGCTATCAAAGTCTGGACCTAAAGGCATTTATGAAACGGAGTATTCACAGGGGGACTGCAAAACATATACGAACTCCTTCTAATGGAAAAATCAAATTCAA
TGAGGATTTGGTTCATCCCACACGTACACGTCATGGGCATCCTGCGTTCTACATAACGTCACTATTCCACCCAAAAGTTTACTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGAGTGGCTATCAAAGTCTGGACCTAAAGGCATTTATGAAACGGAGTATTCACAGGGGGACTGCAAAACATATACGAACTCCTTCTAATGGAAAAATCAAATTCAA
TGAGGATTTGGTTCATCCCACACGTACACGTCATGGGCATCCTGCGTTCTACATAACGTCACTATTCCACCCAAAAGTTTACTTTTAG
Protein sequenceShow/hide protein sequence
MVSGYQSLDLKAFMKRSIHRGTAKHIRTPSNGKIKFNEDLVHPTRTRHGHPAFYITSLFHPKVYF