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CmoCh16G011330 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G011330
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRibulose bisphosphate carboxylase large chain
Genome locationCmo_Chr16:8078805..8081509
RNA-Seq ExpressionCmoCh16G011330
SyntenyCmoCh16G011330
Gene Ontology termsGO:0009853 - photorespiration (biological process)
GO:0019253 - reductive pentose-phosphate cycle (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0004497 - monooxygenase activity (molecular function)
GO:0016984 - ribulose-bisphosphate carboxylase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7012814.1 unnamed protein product [Microthlaspi erraticum]1.3e-1568.18Show/hide
Query:  RMWIGMNMNICKAVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEAV
        R+W+   + + +AVEC  LDGES VA++ITSLCSD  S+ HVES VNQQGPPCKAKYSWVTDSE V
Subjt:  RMWIGMNMNICKAVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEAV

KAD3640919.1 hypothetical protein E3N88_30142 [Mikania micrantha]4.6e-1652.88Show/hide
Query:  IPRFPDSQFDSNRRRGVSAHDFFNRTRNKPIARRRRMWIGMNMNICKAVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEA
        IPR P++      R+GV + +      NK  +   R        I +AVECC LDGES VA++ITSL SD  S+ HVES VNQQGPPCKAKYSWVTDSEA
Subjt:  IPRFPDSQFDSNRRRGVSAHDFFNRTRNKPIARRRRMWIGMNMNICKAVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEA

Query:  VLFI
        V ++
Subjt:  VLFI

KAD4385163.1 hypothetical protein E3N88_25331 [Mikania micrantha]6.0e-1652.88Show/hide
Query:  IPRFPDSQFDSNRRRGVSAHDFFNRTRNKPIARRRRMWIGMNMNICKAVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEA
        IPR P++      R+GV + +      NK  +   R        I +AVECC LDGES VA++ITSL SD  S+ HVES VNQQGPPCKAKYSWVTDSEA
Subjt:  IPRFPDSQFDSNRRRGVSAHDFFNRTRNKPIARRRRMWIGMNMNICKAVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEA

Query:  VLFI
        V ++
Subjt:  VLFI

KAG2276926.1 hypothetical protein Bca52824_059481 [Brassica carinata]6.0e-1674.19Show/hide
Query:  GMNMNICKAVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEAV
        G+    C+AVEC  LDGESLVA++ITSL SD  S+ HVESYVNQQGPPCKAKYSWVTDSE V
Subjt:  GMNMNICKAVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEAV

KAG7528872.1 hypothetical protein ISN44_Un153g000040 [Arabidopsis suecica]4.6e-1653.85Show/hide
Query:  IPRFPDSQFDSNRRRGVSAHDFFNRTRNKPIARRRRMWIGMNMNICKAVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEA
        IPR P++      R+GV + +      NK     RR     +  I +AVEC  LDGES VA++ITSLCSD  S+ HVES VNQQGPPCKAKYSWVTDSEA
Subjt:  IPRFPDSQFDSNRRRGVSAHDFFNRTRNKPIARRRRMWIGMNMNICKAVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEA

Query:  VLFI
        V ++
Subjt:  VLFI

TrEMBL top hitse value%identityAlignment
A0A5N6MLP8 Uncharacterized protein ycf682.2e-1652.88Show/hide
Query:  IPRFPDSQFDSNRRRGVSAHDFFNRTRNKPIARRRRMWIGMNMNICKAVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEA
        IPR P++      R+GV + +      NK  +   R        I +AVECC LDGES VA++ITSL SD  S+ HVES VNQQGPPCKAKYSWVTDSEA
Subjt:  IPRFPDSQFDSNRRRGVSAHDFFNRTRNKPIARRRRMWIGMNMNICKAVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEA

Query:  VLFI
        V ++
Subjt:  VLFI

A0A5N6N5S8 Uncharacterized protein2.9e-1652.88Show/hide
Query:  IPRFPDSQFDSNRRRGVSAHDFFNRTRNKPIARRRRMWIGMNMNICKAVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEA
        IPR P++      R+GV + +      NK  +   R        I +AVECC LDGES VA++ITSL SD  S+ HVES VNQQGPPCKAKYSWVTDSEA
Subjt:  IPRFPDSQFDSNRRRGVSAHDFFNRTRNKPIARRRRMWIGMNMNICKAVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEA

Query:  VLFI
        V ++
Subjt:  VLFI

A0A6D2HBR0 Uncharacterized protein6.4e-1668.18Show/hide
Query:  RMWIGMNMNICKAVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEAV
        R+W+   + + +AVEC  LDGES VA++ITSLCSD  S+ HVES VNQQGPPCKAKYSWVTDSE V
Subjt:  RMWIGMNMNICKAVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEAV

A0A6D2I321 Uncharacterized protein ycf681.1e-1554.46Show/hide
Query:  IPRFPDSQFDSNRRRGVSAHDFFNRTRNKPIARRRRMWIGMNMNICKAVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEA
        IPR P++      R+GV + +      NK     RR     +  I +AVEC  LDGES VA++ITSLCSD  S+ HVES VNQQGPPCKAKYSWVTDSE 
Subjt:  IPRFPDSQFDSNRRRGVSAHDFFNRTRNKPIARRRRMWIGMNMNICKAVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEA

Query:  V
        V
Subjt:  V

A0A6N2L9E4 Uncharacterized protein ycf681.3e-1677.59Show/hide
Query:  KAVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEAVLFI
        +AVECC LDGES VA++ITSLCSD  S+ HVES VNQQGPPCKAKYSWVTDSEAV ++
Subjt:  KAVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEAVLFI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGGATTCGCGAAGAAAATTCCACGTTTCCCCGACTCGCAATTCGATTCCAATCGCCGGCGCGGCGTCTCAGCCCACGATTTCTTCAATCGAACACGAAATAAGCC
GATTGCAAGACGTCGAAGAATGTGGATTGGGATGAATATGAATATATGCAAAGCGGTAGAGTGCTGCATCTTAGATGGCGAGAGTCTAGTAGCCAAAAACATCACTAGCT
TATGCTCTGACCTGTGTAGCGTGAGGCACGTGGAATCCTATGTGAATCAACAAGGACCACCTTGTAAGGCTAAATACTCCTGGGTGACCGATAGTGAAGCAGTACTTTTT
ATTTTCGTTTCATATTTTAATGCATCGCTCTCACTGATCCAACAATCCCACTGTCGAGCACAAACTCTCTCTCTTCAGCTCAGTGGGAGCAAATCTGAAATCTTGCCGGA
GCGTTGCTGGAGATTTCTTACTGGATTTGTATTTTTCCCCATTCTGATGATCTTTGGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGGGATTCGCGAAGAAAATTCCACGTTTCCCCGACTCGCAATTCGATTCCAATCGCCGGCGCGGCGTCTCAGCCCACGATTTCTTCAATCGAACACGAAATAAGCC
GATTGCAAGACGTCGAAGAATGTGGATTGGGATGAATATGAATATATGCAAAGCGGTAGAGTGCTGCATCTTAGATGGCGAGAGTCTAGTAGCCAAAAACATCACTAGCT
TATGCTCTGACCTGTGTAGCGTGAGGCACGTGGAATCCTATGTGAATCAACAAGGACCACCTTGTAAGGCTAAATACTCCTGGGTGACCGATAGTGAAGCAGTACTTTTT
ATTTTCGTTTCATATTTTAATGCATCGCTCTCACTGATCCAACAATCCCACTGTCGAGCACAAACTCTCTCTCTTCAGCTCAGTGGGAGCAAATCTGAAATCTTGCCGGA
GCGTTGCTGGAGATTTCTTACTGGATTTGTATTTTTCCCCATTCTGATGATCTTTGGTTAA
Protein sequenceShow/hide protein sequence
MGGFAKKIPRFPDSQFDSNRRRGVSAHDFFNRTRNKPIARRRRMWIGMNMNICKAVECCILDGESLVAKNITSLCSDLCSVRHVESYVNQQGPPCKAKYSWVTDSEAVLF
IFVSYFNASLSLIQQSHCRAQTLSLQLSGSKSEILPERCWRFLTGFVFFPILMIFG