; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh16G011540 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G011540
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionATP-dependent Clp protease proteolytic subunit
Genome locationCmo_Chr16:8231426..8233922
RNA-Seq ExpressionCmoCh16G011540
SyntenyCmoCh16G011540
Gene Ontology termsNA
InterPro domainsIPR023562 - Clp protease proteolytic subunit /Translocation-enhancing protein TepA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KJB51775.1 hypothetical protein B456_008G231300 [Gossypium raimondii]2.0e-1448.25Show/hide
Query:  MEVAEVAATASSFALSNRI-----SPLIIEPD-------------LLSTNFLILF-AGGSVFGDFSGMKLRPSLLNPDYSCESKGKR-------------
        MEVA   A ASSFAL  R+     S  I  P               LSTNFL  F   GSV GDFSG+KLRP  L P   C SK KR             
Subjt:  MEVAEVAATASSFALSNRI-----SPLIIEPD-------------LLSTNFLILF-AGGSVFGDFSGMKLRPSLLNPDYSCESKGKR-------------

Query:  -----------YVKPSIFTLCIGNAWGEAALLLAAGAQGSRSA
                   YVKP IFTLC+GNAWGEAALLLAAGA G+RSA
Subjt:  -----------YVKPSIFTLCIGNAWGEAALLLAAGAQGSRSA

XP_004147236.1 ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Cucumis sativus]3.6e-1636.89Show/hide
Query:  EVAATASSFALSNRISPLI------------------IEPDLLSTNFLILFAGGSVFGDFSGMKLRPSLLNPDYSCESKGKR------------------
        EVA TASSFAL+ RISPLI                  +    LSTNFLI FAGGSV G+FSG+KLRPS LNP+YS  SKGKR                  
Subjt:  EVAATASSFALSNRISPLI------------------IEPDLLSTNFLILFAGGSVFGDFSGMKLRPSLLNPDYSCESKGKR------------------

Query:  --------------------------------------------------------------------------YVKPSIFTLCIGNAWGEAALLLAAGA
                                                                                  YVKP IFTLC+GNAWGEAALLLAAGA
Subjt:  --------------------------------------------------------------------------YVKPSIFTLCIGNAWGEAALLLAAGA

Query:  QGSRSA
         G+RSA
Subjt:  QGSRSA

XP_008448778.1 PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Cucumis melo]1.2e-1435.92Show/hide
Query:  EVAATASSFALSNRISPLIIEPDL------------------LSTNFLILFAGGSVFGDFSGMKLRPSLLNPDYSCESKGK-------------------
        EVA TASSFAL+ RISPL    +                   LSTNFLI FAGGSV GDFSG+KLRP  LNP+    SKGK                   
Subjt:  EVAATASSFALSNRISPLIIEPDL------------------LSTNFLILFAGGSVFGDFSGMKLRPSLLNPDYSCESKGK-------------------

Query:  -------------------------------------------------------------------------RYVKPSIFTLCIGNAWGEAALLLAAGA
                                                                                 RYVKP IFTLC+GNAWGEAALLLAAGA
Subjt:  -------------------------------------------------------------------------RYVKPSIFTLCIGNAWGEAALLLAAGA

Query:  QGSRSA
        QG+RSA
Subjt:  QGSRSA

XP_022155521.1 ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Momordica charantia]1.8e-1535.92Show/hide
Query:  EVAATASSFALSNRISPLI------------------IEPDLLSTNFLILFAGGSVFGDFSGMKLRPSLLNPDYSCESKGK-------------------
        EVA TAS+FAL+ RISP I                  + P  LSTNFL  FAGGSV GDF+G+KLRPS LNPD S  SKGK                   
Subjt:  EVAATASSFALSNRISPLI------------------IEPDLLSTNFLILFAGGSVFGDFSGMKLRPSLLNPDYSCESKGK-------------------

Query:  -------------------------------------------------------------------------RYVKPSIFTLCIGNAWGEAALLLAAGA
                                                                                 RYVKP IFTLC+GNAWGEAALLLAAGA
Subjt:  -------------------------------------------------------------------------RYVKPSIFTLCIGNAWGEAALLLAAGA

Query:  QGSRSA
        +G+RSA
Subjt:  QGSRSA

XP_038902969.1 ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Benincasa hispida]4.7e-1637.38Show/hide
Query:  EVAATASSFALSNRISPLI------------------IEPDLLSTNFLILFAGGSVFGDFSGMKLRPSLLNPDYSCESKGK-------------------
        EVA TASSFAL+ RISPLI                  +    LSTNFLI FAGGSV GDFSG+KLRPS LN D S  SKGK                   
Subjt:  EVAATASSFALSNRISPLI------------------IEPDLLSTNFLILFAGGSVFGDFSGMKLRPSLLNPDYSCESKGK-------------------

Query:  -------------------------------------------------------------------------RYVKPSIFTLCIGNAWGEAALLLAAGA
                                                                                 RYVKP IFTLC+GNAWGEAALLLAAGA
Subjt:  -------------------------------------------------------------------------RYVKPSIFTLCIGNAWGEAALLLAAGA

Query:  QGSRSA
        QG+RSA
Subjt:  QGSRSA

TrEMBL top hitse value%identityAlignment
A0A0A0L232 ATP-dependent Clp protease proteolytic subunit1.7e-1636.89Show/hide
Query:  EVAATASSFALSNRISPLI------------------IEPDLLSTNFLILFAGGSVFGDFSGMKLRPSLLNPDYSCESKGKR------------------
        EVA TASSFAL+ RISPLI                  +    LSTNFLI FAGGSV G+FSG+KLRPS LNP+YS  SKGKR                  
Subjt:  EVAATASSFALSNRISPLI------------------IEPDLLSTNFLILFAGGSVFGDFSGMKLRPSLLNPDYSCESKGKR------------------

Query:  --------------------------------------------------------------------------YVKPSIFTLCIGNAWGEAALLLAAGA
                                                                                  YVKP IFTLC+GNAWGEAALLLAAGA
Subjt:  --------------------------------------------------------------------------YVKPSIFTLCIGNAWGEAALLLAAGA

Query:  QGSRSA
         G+RSA
Subjt:  QGSRSA

A0A0D2U864 ATP-dependent Clp protease proteolytic subunit9.5e-1548.25Show/hide
Query:  MEVAEVAATASSFALSNRI-----SPLIIEPD-------------LLSTNFLILF-AGGSVFGDFSGMKLRPSLLNPDYSCESKGKR-------------
        MEVA   A ASSFAL  R+     S  I  P               LSTNFL  F   GSV GDFSG+KLRP  L P   C SK KR             
Subjt:  MEVAEVAATASSFALSNRI-----SPLIIEPD-------------LLSTNFLILF-AGGSVFGDFSGMKLRPSLLNPDYSCESKGKR-------------

Query:  -----------YVKPSIFTLCIGNAWGEAALLLAAGAQGSRSA
                   YVKP IFTLC+GNAWGEAALLLAAGA G+RSA
Subjt:  -----------YVKPSIFTLCIGNAWGEAALLLAAGAQGSRSA

A0A1S3BJW8 ATP-dependent Clp protease proteolytic subunit5.6e-1535.92Show/hide
Query:  EVAATASSFALSNRISPLIIEPDL------------------LSTNFLILFAGGSVFGDFSGMKLRPSLLNPDYSCESKGK-------------------
        EVA TASSFAL+ RISPL    +                   LSTNFLI FAGGSV GDFSG+KLRP  LNP+    SKGK                   
Subjt:  EVAATASSFALSNRISPLIIEPDL------------------LSTNFLILFAGGSVFGDFSGMKLRPSLLNPDYSCESKGK-------------------

Query:  -------------------------------------------------------------------------RYVKPSIFTLCIGNAWGEAALLLAAGA
                                                                                 RYVKP IFTLC+GNAWGEAALLLAAGA
Subjt:  -------------------------------------------------------------------------RYVKPSIFTLCIGNAWGEAALLLAAGA

Query:  QGSRSA
        QG+RSA
Subjt:  QGSRSA

A0A5A7THF6 ATP-dependent Clp protease proteolytic subunit5.6e-1535.92Show/hide
Query:  EVAATASSFALSNRISPLIIEPDL------------------LSTNFLILFAGGSVFGDFSGMKLRPSLLNPDYSCESKGK-------------------
        EVA TASSFAL+ RISPL    +                   LSTNFLI FAGGSV GDFSG+KLRP  LNP+    SKGK                   
Subjt:  EVAATASSFALSNRISPLIIEPDL------------------LSTNFLILFAGGSVFGDFSGMKLRPSLLNPDYSCESKGK-------------------

Query:  -------------------------------------------------------------------------RYVKPSIFTLCIGNAWGEAALLLAAGA
                                                                                 RYVKP IFTLC+GNAWGEAALLLAAGA
Subjt:  -------------------------------------------------------------------------RYVKPSIFTLCIGNAWGEAALLLAAGA

Query:  QGSRSA
        QG+RSA
Subjt:  QGSRSA

A0A6J1DRW9 ATP-dependent Clp protease proteolytic subunit8.6e-1635.92Show/hide
Query:  EVAATASSFALSNRISPLI------------------IEPDLLSTNFLILFAGGSVFGDFSGMKLRPSLLNPDYSCESKGK-------------------
        EVA TAS+FAL+ RISP I                  + P  LSTNFL  FAGGSV GDF+G+KLRPS LNPD S  SKGK                   
Subjt:  EVAATASSFALSNRISPLI------------------IEPDLLSTNFLILFAGGSVFGDFSGMKLRPSLLNPDYSCESKGK-------------------

Query:  -------------------------------------------------------------------------RYVKPSIFTLCIGNAWGEAALLLAAGA
                                                                                 RYVKP IFTLC+GNAWGEAALLLAAGA
Subjt:  -------------------------------------------------------------------------RYVKPSIFTLCIGNAWGEAALLLAAGA

Query:  QGSRSA
        +G+RSA
Subjt:  QGSRSA

SwissProt top hitse value%identityAlignment
Q8LB10 ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic2.9e-0884.38Show/hide
Query:  YVKPSIFTLCIGNAWGEAALLLAAGAQGSRSA
        YVKP IFTLC+GNAWGEAALLL AGA+G+RSA
Subjt:  YVKPSIFTLCIGNAWGEAALLLAAGAQGSRSA

Arabidopsis top hitse value%identityAlignment
AT4G17040.1 CLP protease R subunit 42.0e-0984.38Show/hide
Query:  YVKPSIFTLCIGNAWGEAALLLAAGAQGSRSA
        YVKP IFTLC+GNAWGEAALLL AGA+G+RSA
Subjt:  YVKPSIFTLCIGNAWGEAALLLAAGAQGSRSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGTCGCCGAGGTCGCCGCCACTGCCTCCAGCTTCGCGCTTTCCAACAGAATATCGCCATTGATAATCGAACCGGACCTTCTTTCCACTAATTTTCTCATC
CTTTTCGCCGGTGGCAGCGTCTTCGGGGACTTTTCCGGCATGAAGCTCCGGCCATCTTTGCTTAATCCGGATTATTCCTGTGAATCCAAGGGCAAAAGATATGTT
AAGCCTTCTATATTCACGTTATGCATTGGTAATGCTTGGGGAGAAGCAGCACTTCTTTTGGCAGCTGGTGCTCAGGGAAGCCGTTCTGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGTCGCCGAGGTCGCCGCCACTGCCTCCAGCTTCGCGCTTTCCAACAGAATATCGCCATTGATAATCGAACCGGACCTTCTTTCCACTAATTTTCTCATC
CTTTTCGCCGGTGGCAGCGTCTTCGGGGACTTTTCCGGCATGAAGCTCCGGCCATCTTTGCTTAATCCGGATTATTCCTGTGAATCCAAGGGCAAAAGATATGTT
AAGCCTTCTATATTCACGTTATGCATTGGTAATGCTTGGGGAGAAGCAGCACTTCTTTTGGCAGCTGGTGCTCAGGGAAGCCGTTCTGCATAG
Protein sequenceShow/hide protein sequence
MEVAEVAATASSFALSNRISPLIIEPDLLSTNFLILFAGGSVFGDFSGMKLRPSLLNPDYSCESKGKRYVKPSIFTLCIGNAWGEAALLLAAGAQGSRSA