CuGenDBv2

Gene ID	CmoCh16G011940
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	HMA domain-containing protein
Genome location	Cmo_Chr16:8513512..8514977
RNA-Seq Expression	CmoCh16G011940
Synteny	CmoCh16G011940
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR006121 - Heavy metal-associated domain, HMA IPR036163 - Heavy metal-associated domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KGN55871.1 hypothetical protein Csa_010412 [Cucumis sativus]

1.1e-23

66.35

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Query:  MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISGSAFEIPQLVEFTIDVTKKQVVVKGNVKFQGKIHEESSIHSQTYNSKSLKSQSLSHQF
        M+QSLLFSE+LTPP F+VIVINANMSCNGCRQRVSQ++SK+S       +L E TIDVTKKQV+VKGNVK Q K ++E++IHSQ  N  SLKS   S  F
Subjt:  MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISGSAFEIPQLVEFTIDVTKKQVVVKGNVKFQGKIHEESSIHSQTYNSKSLKSQSLSHQF

Query:  SNNC
        SN+C
Subjt:  SNNC

XP_022965234.1 uncharacterized protein LOC111465148 isoform X1 [Cucurbita maxima]

1.9e-39

88.46

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Query:  MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISGSAFEIPQLVEFTIDVTKKQVVVKGNVKFQGKIHEESSIHSQTYNSKSLKSQSLSHQF
        MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKIS       +LVEFTIDVTKKQVVVKGNVKFQGKIHEE SIHSQTYNS SLKSQSLSHQ+
Subjt:  MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISGSAFEIPQLVEFTIDVTKKQVVVKGNVKFQGKIHEESSIHSQTYNSKSLKSQSLSHQF

Query:  SNNC
        SN+C
Subjt:  SNNC

XP_022965235.1 uncharacterized protein LOC111465148 isoform X2 [Cucurbita maxima]

1.1e-36

86.54

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Query:  MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISGSAFEIPQLVEFTIDVTKKQVVVKGNVKFQGKIHEESSIHSQTYNSKSLKSQSLSHQF
        MEQSLLFSEDLTPPS  VIVINANMSCNGCRQRVSQLLSKIS       +LVEFTIDVTKKQVVVKGNVKFQGKIHEE SIHSQTYNS SLKSQSLSHQ+
Subjt:  MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISGSAFEIPQLVEFTIDVTKKQVVVKGNVKFQGKIHEESSIHSQTYNSKSLKSQSLSHQF

Query:  SNNC
        SN+C
Subjt:  SNNC

XP_023553457.1 uncharacterized protein LOC111810871 [Cucurbita pepo subsp. pepo]

3.7e-40

88.46

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Query:  MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISGSAFEIPQLVEFTIDVTKKQVVVKGNVKFQGKIHEESSIHSQTYNSKSLKSQSLSHQF
        MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKIS       +LVEFTIDVTKKQVVVKGNVKFQGKIHEE+ +HSQTYNSKSLKSQSL+HQF
Subjt:  MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISGSAFEIPQLVEFTIDVTKKQVVVKGNVKFQGKIHEESSIHSQTYNSKSLKSQSLSHQF

Query:  SNNC
        SNNC
Subjt:  SNNC

XP_038903445.1 copper transport protein ATX1 [Benincasa hispida]

5.1e-21

65.38

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Query:  MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISGSAFEIPQLVEFTIDVTKKQVVVKGNVKFQGKIHEESSIHSQTYNSKSLKSQSLSHQF
        MEQSLLFSE+LTPPSFQVIVINANMSC GCRQRVSQ++ K+S       +LVEFTIDVTK+QV+VKGNVK Q K +EE+++        SLKS   S QF
Subjt:  MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISGSAFEIPQLVEFTIDVTKKQVVVKGNVKFQGKIHEESSIHSQTYNSKSLKSQSLSHQF

Query:  SNNC
        SN C
Subjt:  SNNC

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L6W5 HMA domain-containing protein

5.3e-24

66.35

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Query:  MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISGSAFEIPQLVEFTIDVTKKQVVVKGNVKFQGKIHEESSIHSQTYNSKSLKSQSLSHQF
        M+QSLLFSE+LTPP F+VIVINANMSCNGCRQRVSQ++SK+S       +L E TIDVTKKQV+VKGNVK Q K ++E++IHSQ  N  SLKS   S  F
Subjt:  MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISGSAFEIPQLVEFTIDVTKKQVVVKGNVKFQGKIHEESSIHSQTYNSKSLKSQSLSHQF

Query:  SNNC
        SN+C
Subjt:  SNNC

A0A6J1DJ58 uncharacterized protein LOC111021388 isoform X1

4.2e-21

63.46

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Query:  MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISGSAFEIPQLVEFTIDVTKKQVVVKGNVKFQGKIHEESSIHSQTYNSKSLKSQSLSHQF
        M+QSLLF E+LTPP FQVIVINANM CN CRQRVSQLLSK+S       +L+E TIDVTK QVVVKGN+KFQ K  EE ++H       SLKS SL  + 
Subjt:  MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISGSAFEIPQLVEFTIDVTKKQVVVKGNVKFQGKIHEESSIHSQTYNSKSLKSQSLSHQF

Query:  SNNC
        SN+C
Subjt:  SNNC

A0A6J1DKV3 uncharacterized protein LOC111021388 isoform X2

2.5e-18

61.54

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Query:  MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISGSAFEIPQLVEFTIDVTKKQVVVKGNVKFQGKIHEESSIHSQTYNSKSLKSQSLSHQF
        M+QSLLF E+LTPP   VIVINANM CN CRQRVSQLLSK+S       +L+E TIDVTK QVVVKGN+KFQ K  EE ++H       SLKS SL  + 
Subjt:  MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISGSAFEIPQLVEFTIDVTKKQVVVKGNVKFQGKIHEESSIHSQTYNSKSLKSQSLSHQF

Query:  SNNC
        SN+C
Subjt:  SNNC

A0A6J1HN60 uncharacterized protein LOC111465148 isoform X2

5.5e-37

86.54

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Query:  MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISGSAFEIPQLVEFTIDVTKKQVVVKGNVKFQGKIHEESSIHSQTYNSKSLKSQSLSHQF
        MEQSLLFSEDLTPPS  VIVINANMSCNGCRQRVSQLLSKIS       +LVEFTIDVTKKQVVVKGNVKFQGKIHEE SIHSQTYNS SLKSQSLSHQ+
Subjt:  MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISGSAFEIPQLVEFTIDVTKKQVVVKGNVKFQGKIHEESSIHSQTYNSKSLKSQSLSHQF

Query:  SNNC
        SN+C
Subjt:  SNNC

A0A6J1HQF9 uncharacterized protein LOC111465148 isoform X1

9.0e-40

88.46

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Query:  MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISGSAFEIPQLVEFTIDVTKKQVVVKGNVKFQGKIHEESSIHSQTYNSKSLKSQSLSHQF
        MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKIS       +LVEFTIDVTKKQVVVKGNVKFQGKIHEE SIHSQTYNS SLKSQSLSHQ+
Subjt:  MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISGSAFEIPQLVEFTIDVTKKQVVVKGNVKFQGKIHEESSIHSQTYNSKSLKSQSLSHQF

Query:  SNNC
        SN+C
Subjt:  SNNC

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G35730.1 Heavy metal transport/detoxification superfamily protein

1.2e-07

38.24

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Query:  QSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISGSAFEIPQLVEFTIDVTKKQVVVKGNVK
        ++L+  E L+ PSFQVI INA++ C  C+ RVS+++SK++G       + E+ +D+ KK V+ +G+ +
Subjt:  QSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISGSAFEIPQLVEFTIDVTKKQVVVKGNVK

Sequences

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CDS sequence

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ATGGAGCAATCTTTGTTGTTTTCTGAGGACCTTACGCCCCCTTCTTTTCAGGTAATTGTTATAAATGCAAATATGAGTTGCAACGGGTGTCGCCAAAGAGTTTCTCAACT
TCTCTCTAAAATCTCTGGTTCTGCGTTTGAAATACCTCAGTTAGTCGAGTTCACCATAGATGTGACAAAAAAACAAGTGGTTGTGAAAGGAAATGTGAAATTCCAAGGCA
AGATTCACGAAGAAAGTAGTATCCACTCTCAAACCTACAACTCCAAATCTCTAAAATCCCAATCCCTCTCCCATCAATTCTCAAACAATTGCTTGTAA

mRNA sequence

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GAAGCATCATCCATGGCTGCCTAACTAGAGAGAGAAAGTCAAGAACTTTGACGAACAGCGCCAAGAATGGAGCAATCTTTGTTGTTTTCTGAGGACCTTACGCCCCCTTC
TTTTCAGGTAATTGTTATAAATGCAAATATGAGTTGCAACGGGTGTCGCCAAAGAGTTTCTCAACTTCTCTCTAAAATCTCTGGTTCTGCGTTTGAAATACCTCAGTTAG
TCGAGTTCACCATAGATGTGACAAAAAAACAAGTGGTTGTGAAAGGAAATGTGAAATTCCAAGGCAAGATTCACGAAGAAAGTAGTATCCACTCTCAAACCTACAACTCC
AAATCTCTAAAATCCCAATCCCTCTCCCATCAATTCTCAAACAATTGCTTGTAAATTGATATTTCTTTTATCCAAGTAGATATTACATTTACTCATATTATTACTACATA
TCTAACTTGAACCACAAGATTATG

Protein sequence

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MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISGSAFEIPQLVEFTIDVTKKQVVVKGNVKFQGKIHEESSIHSQTYNSKSLKSQSLSHQFSNNCL

CmoCh16G011940 (gene) of Cucurbita moschata (Rifu) v1 genome